Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009685

Physical Location & Seq

Genomic Coordinates Forward (+)

390655 .. 391958

Gene Structure 1304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g00650.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAAATATCCTCGTTTTCACGAACACCGTTCAGGGCATGCTAAAATGGTGGACATGCAATTAAAGGGAAGTGCTTGCAGGATTAAGAAGTGTGCTTTCGATTTACTGTCAATCGGGAACGATCTGACGAACGACGATCACTCGTGGGAATTGATGGGAAGGGATCTCCGCCTCAAATCAACGTTCTTGTACTGTGATCTTAATCAGATGATCTCTCGTTCACCAAGGGACCAGAAGAGAGCTCTCACTGAACTTGCCAACAAACTGTTTTGCTCCATTGAAGAGTTGGATCATGCAGTGAAAATTCGAAGCCTGGCGTTGACCCAAGATCGATACAATGAGGCTGCTGTCATTTTACAGGAGGTGATGGCTCTTGCGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbQ

Protein Analysis

128

Amino Acids

14.64

Weight (kDa)

8.38

Isoelectric Point (pI)

46.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36490 FvH4_4g36490
malus_domestica	MD13G1008800.v1.1 MD16G1006800.v1.1
prunus_persica	Prupe.1G343900_v2.0.a1 Prupe.1G343900_v2.0.a1 Prupe.1G343900_v2.0.a1 Prupe.1G343900_v2.0.a1 Prupe.1G343900_v2.0.a1
pyrus_communis	pycom13g00740 pycom16g00650
rosa_chinensis	RchiOBHm_Chr4g0446251
rosa_laevigata	RLG00000005677
rosa_multiflora	Rmu_sc0014728.1_g000005
rosa_roxburghii	Rroxscaffold_5G00386650
rosa_rugosa	Rorug04G0368900 Rorug04G0369000
rosa_samantha	Rh4AG431000 Rh4BG440400 Rh4CG457700 Rh4DG438900
rosa_wichuraiana	Rw4G036820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	169
AclI	AACGTT	1 cut(s)	182
AclWI	GGATC	2 cut(s)	171, 297
AcsI	RAATTY	1 cut(s)	303
AfaI	GTAC	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	281
AjnI	CCWGG	1 cut(s)	312
AluBI	AGCT	1 cut(s)	242
AluI	AGCT	1 cut(s)	242
Alw21I	GWGCWC	1 cut(s)	244
AlwI	GGATC	2 cut(s)	171, 297
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	1 cut(s)	303
AspLEI	GCGC	1 cut(s)	379
AspS9I	GGNCC	1 cut(s)	229
AsuHPI	GGTGA	2 cut(s)	213, 376
AsuII	TTCGAA	1 cut(s)	307
AvaII	GGWCC	1 cut(s)	229
BanII	GRGCYC	1 cut(s)	244
BauI	CACGAG	1 cut(s)	142
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	2 cut(s)	148, 361
BciT130I	CCWGG	1 cut(s)	314
BisI	GCNGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	346
Bme1390I	CCNGG	1 cut(s)	314
Bme18I	GGWCC	1 cut(s)	229
BmgT120I	GGNCC	1 cut(s)	229
BmiI	GGNNCC	1 cut(s)	230
BmrFI	CCNGG	1 cut(s)	314
Bpu14I	TTCGAA	1 cut(s)	307
Bsa29I	ATCGAT	1 cut(s)	331
BsaBI	GATNNNNATC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	224
Bse8I	GATNNNNATC	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	314
BseCI	ATCGAT	1 cut(s)	331
BseDI	CCNNGG	1 cut(s)	224
BseJI	GATNNNNATC	1 cut(s)	201
BseXI	GCAGC	1 cut(s)	331
BshVI	ATCGAT	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	244
BslFI	GGGAC	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	242
Bsp119I	TTCGAA	1 cut(s)	307
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	7 cut(s)	121, 136, 163, 196, 210, 289, 328
BspACI	CCGC	1 cut(s)	169
BspDI	ATCGAT	1 cut(s)	331
BspLI	GGNNCC	1 cut(s)	230
BspPI	GGATC	2 cut(s)	171, 297
BspT104I	TTCGAA	1 cut(s)	307
BssECI	CCNNGG	1 cut(s)	224
BssMI	GATC	7 cut(s)	121, 136, 163, 196, 210, 289, 328
BssSI	CACGAG	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	224
Bst2BI	CACGAG	1 cut(s)	142
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	4 cut(s)	29, 108, 194, 267
Bst6I	CTCTTC	2 cut(s)	230, 276
BstBI	TTCGAA	1 cut(s)	307
BstC8I	GCNNGC	2 cut(s)	39, 76
BstHHI	GCGC	1 cut(s)	379
BstKTI	GATC	7 cut(s)	124, 139, 166, 199, 213, 292, 331
BstMBI	GATC	7 cut(s)	121, 136, 163, 196, 210, 289, 328
BstNI	CCWGG	1 cut(s)	314
BstNSI	RCATGY	2 cut(s)	41, 58
BstSCI	CCNGG	1 cut(s)	312
BstV1I	GCAGC	1 cut(s)	331
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
Bsu15I	ATCGAT	1 cut(s)	331
BsuTUI	ATCGAT	1 cut(s)	331
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	2 cut(s)	246, 303
Cac8I	GCNNGC	2 cut(s)	39, 76
CfoI	GCGC	1 cut(s)	379
Cfr13I	GGNCC	1 cut(s)	229
ClaI	ATCGAT	1 cut(s)	331
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	3 cut(s)	38, 55, 293
CviJI	RGCY	4 cut(s)	242, 312, 344, 371
CviKI_1	RGCY	4 cut(s)	242, 312, 344, 371
CviQI	GTAC	1 cut(s)	190
DpnI	GATC	7 cut(s)	123, 138, 165, 198, 212, 291, 330
DpnII	GATC	7 cut(s)	121, 136, 163, 196, 210, 289, 328
Eam1104I	CTCTTC	2 cut(s)	230, 276
EarI	CTCTTC	2 cut(s)	230, 276
EciI	GGCGGA	1 cut(s)	158
Ecl136II	GAGCTC	1 cut(s)	242
Eco130I	CCWWGG	1 cut(s)	224
Eco24I	GRGCYC	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	229
Eco53kI	GAGCTC	1 cut(s)	242
EcoICRI	GAGCTC	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	312
EcoT14I	CCWWGG	1 cut(s)	224
EcoT38I	GRGCYC	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	224
FaeI	CATG	3 cut(s)	41, 58, 296
FaiI	YATR	4 cut(s)	39, 56, 294, 382
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	3 cut(s)	37, 54, 292
Fnu4HI	GCNGC	1 cut(s)	345
FriOI	GRGCYC	1 cut(s)	244
Fsp4HI	GCNGC	1 cut(s)	345
GlaI	GCGC	1 cut(s)	378
GluI	GCNGC	1 cut(s)	345
HhaI	GCGC	1 cut(s)	379
Hin1II	CATG	3 cut(s)	41, 58, 296
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HphI	GGTGA	2 cut(s)	213, 376
Hpy166II	GTNNAC	3 cut(s)	52, 221, 321
Hpy188I	TCNGA	2 cut(s)	126, 207
Hpy188III	TCNNGA	2 cut(s)	20, 115
Hpy8I	GTNNAC	3 cut(s)	52, 221, 321
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	1 cut(s)	153
HpyCH4III	ACNGT	4 cut(s)	29, 108, 194, 267
HpyCH4IV	ACGT	1 cut(s)	182
HpyCH4V	TGCA	3 cut(s)	58, 78, 296
HpySE526I	ACGT	1 cut(s)	182
Hsp92II	CATG	3 cut(s)	41, 58, 296
HspAI	GCGC	1 cut(s)	377
Kzo9I	GATC	7 cut(s)	121, 136, 163, 196, 210, 289, 328
LmnI	GCTCC	1 cut(s)	278
LpnPI	CCDG	6 cut(s)	18, 64, 245, 299, 326, 344
Lsp1109I	GCAGC	1 cut(s)	331
MaeII	ACGT	1 cut(s)	182
MalI	GATC	7 cut(s)	123, 138, 165, 198, 212, 291, 330
MboI	GATC	7 cut(s)	121, 136, 163, 196, 210, 289, 328
MboII	GAAGA	2 cut(s)	247, 293
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	3 cut(s)	59, 149, 303
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	4 cut(s)	21, 182, 334, 355
MseI	TTAA	3 cut(s)	62, 84, 201
MspR9I	CCNGG	1 cut(s)	314
MvaI	CCWGG	1 cut(s)	314
NdeII	GATC	7 cut(s)	121, 136, 163, 196, 210, 289, 328
NlaIII	CATG	3 cut(s)	41, 58, 296
NlaIV	GGNNCC	1 cut(s)	230
NspI	RCATGY	2 cut(s)	41, 58
NspV	TTCGAA	1 cut(s)	307
PaeI	GCATGC	1 cut(s)	41
PkrI	GCNGC	1 cut(s)	346
Psp124BI	GAGCTC	1 cut(s)	244
Psp1406I	AACGTT	1 cut(s)	182
Psp6I	CCWGG	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	1 cut(s)	230
PspPI	GGNCC	1 cut(s)	229
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SacI	GAGCTC	1 cut(s)	244
SaqAI	TTAA	3 cut(s)	62, 84, 201
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	7 cut(s)	121, 136, 163, 196, 210, 289, 328
Sau96I	GGNCC	1 cut(s)	229
ScrFI	CCNGG	1 cut(s)	314
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	3 cut(s)	185, 244, 366
SfuI	TTCGAA	1 cut(s)	307
SinI	GGWCC	1 cut(s)	229
SphI	GCATGC	1 cut(s)	41
Sse9I	AATT	3 cut(s)	59, 149, 303
SsiI	CCGC	1 cut(s)	169
SstI	GAGCTC	1 cut(s)	244
StyD4I	CCNGG	1 cut(s)	312
StyI	CCWWGG	1 cut(s)	224
TaaI	ACNGT	4 cut(s)	29, 108, 194, 267
TaiI	ACGT	1 cut(s)	185
TaqI	TCGA	3 cut(s)	99, 307, 331
TasI	AATT	3 cut(s)	59, 149, 303
TatI	WGTACW	1 cut(s)	189
Tru1I	TTAA	3 cut(s)	62, 84, 201
Tru9I	TTAA	3 cut(s)	62, 84, 201
TscAI	CASTG	2 cut(s)	253, 303
TseI	GCWGC	1 cut(s)	344
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	253, 303
VpaK11BI	GGWCC	1 cut(s)	229
XapI	RAATTY	1 cut(s)	303
XceI	RCATGY	2 cut(s)	41, 58
XcmI	CCANNNNNNNNNTGG	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.