Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014728.1

Orthogroup ID

OG0009685

Physical Location & Seq

Genomic Coordinates Forward (+)

5067 .. 8348

Gene Structure 3282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014728.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgactatctccatcccggaggataactcactggaagggttgcgatggattattcccttccctccccttgcagtaccaatggtagcagcggtgactcagatcagaggaggtgcaaactgcaggcacatgacatacccttgttttcaagaagaccatccaggtcatgataaaatggtggatatgcaatcaaagggaattgcttgtaggattaagaagtgtgcctatgaattgctgtcgattggtggtgatctgatggacgacgcttactcgtgggacttgaagggaagggatatacgcctcaaatcgatgttcttgtattgtgatctaagtcagttgatctctaacgtcccaaaggatcagaagaatgccctgacagaagttggcaacaaattgttttcctccatcgaagagttggatcatgcagtgaaaattcgtagcattccgttgactcaagaccgatacaacgaggccggtgtcattctacaggagctgatggttctcatgccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbQ

Protein Analysis

169

Amino Acids

19.04

Weight (kDa)

5.54

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36490 FvH4_4g36490
malus_domestica	MD13G1008800.v1.1 MD16G1006800.v1.1
prunus_persica	Prupe.1G343900_v2.0.a1 Prupe.1G343900_v2.0.a1 Prupe.1G343900_v2.0.a1 Prupe.1G343900_v2.0.a1 Prupe.1G343900_v2.0.a1
pyrus_communis	pycom13g00740 pycom16g00650
rosa_chinensis	RchiOBHm_Chr4g0446251
rosa_laevigata	RLG00000005677
rosa_multiflora	Rmu_sc0014728.1_g000005
rosa_roxburghii	Rroxscaffold_5G00386650
rosa_rugosa	Rorug04G0368900 Rorug04G0369000
rosa_samantha	Rh4AG431000 Rh4BG440400 Rh4CG457700 Rh4DG438900
rosa_wichuraiana	Rw4G036820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	89
AclWI	GGATC	2 cut(s)	363, 423
AcsI	RAATTY	1 cut(s)	429
AfaI	GTAC	1 cut(s)	75
AgsI	TTSAA	2 cut(s)	146, 280
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	1 cut(s)	490
AluI	AGCT	1 cut(s)	490
AlwI	GGATC	2 cut(s)	363, 423
AlwNI	CAGNNNCTG	1 cut(s)	490
AoxI	GGCC	1 cut(s)	468
ApeKI	GCWGC	1 cut(s)	86
ApoI	RAATTY	1 cut(s)	429
AsuC2I	CCSGG	1 cut(s)	17
AsuHPI	GGTGA	2 cut(s)	103, 257
BauI	CACGAG	1 cut(s)	268
BbsI	GAAGAC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	98
BccI	CCATC	6 cut(s)	20, 39, 162, 247, 410, 487
BciT130I	CCWGG	1 cut(s)	159
BcnI	CCSGG	1 cut(s)	17
BfmI	CTRYAG	2 cut(s)	118, 482
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
Bme1390I	CCNGG	2 cut(s)	17, 159
BmrFI	CCNGG	2 cut(s)	17, 159
BpiI	GAAGAC	1 cut(s)	156
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
BpuEI	CTTGAG	1 cut(s)	435
BpuMI	CCSGG	1 cut(s)	17
Bsa29I	ATCGAT	1 cut(s)	305
Bse118I	RCCGGY	1 cut(s)	470
Bse1I	ACTGG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	159
BseCI	ATCGAT	1 cut(s)	305
BseGI	GGATG	2 cut(s)	12, 154
BseMII	CTCAG	1 cut(s)	110
BseNI	ACTGG	1 cut(s)	36
BseRI	GAGGAG	1 cut(s)	120
BseXI	GCAGC	1 cut(s)	98
BshFI	GGCC	1 cut(s)	470
BshVI	ATCGAT	1 cut(s)	305
BsiSI	CCGG	2 cut(s)	17, 471
BslFI	GGGAC	2 cut(s)	287, 332
BsmFI	GGGAC	2 cut(s)	287, 332
BsmI	GAATGC	2 cut(s)	370, 438
BsnI	GGCC	1 cut(s)	470
Bsp143I	GATC	6 cut(s)	99, 247, 322, 336, 355, 415
BspACI	CCGC	1 cut(s)	89
BspANI	GGCC	1 cut(s)	470
BspCNI	CTCAG	1 cut(s)	109
BspDI	ATCGAT	1 cut(s)	305
BspHI	TCATGA	1 cut(s)	163
BspMAI	CTGCAG	1 cut(s)	122
BspPI	GGATC	2 cut(s)	363, 423
BsrFI	RCCGGY	1 cut(s)	470
BsrI	ACTGG	1 cut(s)	36
BssAI	RCCGGY	1 cut(s)	470
BssMI	GATC	6 cut(s)	99, 247, 322, 336, 355, 415
BssSI	CACGAG	1 cut(s)	268
Bst2BI	CACGAG	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	159
Bst6I	CTCTTC	1 cut(s)	402
BstC8I	GCNNGC	1 cut(s)	122
BstDEI	CTNAG	2 cut(s)	96, 326
BstF5I	GGATG	2 cut(s)	12, 154
BstKTI	GATC	6 cut(s)	102, 250, 325, 339, 358, 418
BstMBI	GATC	6 cut(s)	99, 247, 322, 336, 355, 415
BstNI	CCWGG	1 cut(s)	159
BstSCI	CCNGG	2 cut(s)	15, 157
BstSFI	CTRYAG	2 cut(s)	118, 482
BstV1I	GCAGC	1 cut(s)	98
BstV2I	GAAGAC	1 cut(s)	156
Bsu15I	ATCGAT	1 cut(s)	305
BsuRI	GGCC	1 cut(s)	470
BsuTUI	ATCGAT	1 cut(s)	305
BtgZI	GCGATG	1 cut(s)	58
BtsCI	GGATG	2 cut(s)	12, 154
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	2 cut(s)	29, 429
Cac8I	GCNNGC	1 cut(s)	122
CaiI	CAGNNNCTG	1 cut(s)	490
CciI	TCATGA	1 cut(s)	163
Cfr10I	RCCGGY	1 cut(s)	470
ClaI	ATCGAT	1 cut(s)	305
CseI	GACGC	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	4 cut(s)	127, 164, 419, 502
CviJI	RGCY	2 cut(s)	470, 490
CviKI_1	RGCY	2 cut(s)	470, 490
CviQI	GTAC	1 cut(s)	74
DdeI	CTNAG	2 cut(s)	96, 326
DpnI	GATC	6 cut(s)	101, 249, 324, 338, 357, 417
DpnII	GATC	6 cut(s)	99, 247, 322, 336, 355, 415
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
EcoRII	CCWGG	1 cut(s)	157
FaeI	CATG	4 cut(s)	130, 167, 422, 505
FaiI	YATR	8 cut(s)	128, 133, 165, 182, 225, 293, 420, 503
FaqI	GGGAC	2 cut(s)	287, 332
FatI	CATG	4 cut(s)	126, 163, 418, 501
Fnu4HI	GCNGC	1 cut(s)	87
FokI	GGATG	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	87
GluI	GCNGC	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	470
HapII	CCGG	2 cut(s)	17, 471
HgaI	GACGC	1 cut(s)	269
Hin1II	CATG	4 cut(s)	130, 167, 422, 505
HincII	GTYRAC	1 cut(s)	447
HindII	GTYRAC	1 cut(s)	447
HinfI	GANTC	2 cut(s)	94, 448
HpaII	CCGG	2 cut(s)	17, 471
HphI	GGTGA	2 cut(s)	103, 257
Hpy166II	GTNNAC	1 cut(s)	447
Hpy188I	TCNGA	4 cut(s)	99, 104, 252, 360
Hpy188III	TCNNGA	3 cut(s)	146, 164, 452
Hpy8I	GTNNAC	1 cut(s)	447
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	4 cut(s)	29, 67, 274, 279
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	5 cut(s)	71, 113, 120, 184, 422
HpyF3I	CTNAG	2 cut(s)	96, 326
HpySE526I	ACGT	1 cut(s)	345
Hsp92II	CATG	4 cut(s)	130, 167, 422, 505
Kzo9I	GATC	6 cut(s)	99, 247, 322, 336, 355, 415
LmnI	GCTCC	1 cut(s)	487
LpnPI	CCDG	8 cut(s)	17, 30, 106, 144, 171, 383, 470, 484
Lsp1109I	GCAGC	1 cut(s)	98
MaeII	ACGT	1 cut(s)	345
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	6 cut(s)	101, 249, 324, 338, 357, 417
MboI	GATC	6 cut(s)	99, 247, 322, 336, 355, 415
MboII	GAAGA	3 cut(s)	161, 373, 419
MluCI	AATT	4 cut(s)	195, 227, 389, 429
MlyI	GAGTC	2 cut(s)	88, 442
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	7 cut(s)	13, 72, 98, 101, 308, 409, 460
MseI	TTAA	1 cut(s)	210
MspA1I	CMGCKG	1 cut(s)	89
MspI	CCGG	2 cut(s)	17, 471
MspR9I	CCNGG	2 cut(s)	17, 159
Mva1269I	GAATGC	2 cut(s)	370, 438
MvaI	CCWGG	1 cut(s)	159
NciI	CCSGG	1 cut(s)	17
NdeII	GATC	6 cut(s)	99, 247, 322, 336, 355, 415
NlaIII	CATG	4 cut(s)	130, 167, 422, 505
NmuCI	GTSAC	1 cut(s)	91
PagI	TCATGA	1 cut(s)	163
PctI	GAATGC	2 cut(s)	370, 438
PfoI	TCCNGGA	1 cut(s)	15
PkrI	GCNGC	1 cut(s)	88
PleI	GAGTC	2 cut(s)	88, 442
PpsI	GAGTC	2 cut(s)	88, 442
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PstI	CTGCAG	1 cut(s)	122
PstNI	CAGNNNCTG	1 cut(s)	490
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	1 cut(s)	87
Sau3AI	GATC	6 cut(s)	99, 247, 322, 336, 355, 415
SchI	GAGTC	2 cut(s)	88, 442
ScrFI	CCNGG	2 cut(s)	17, 159
SetI	ASST	4 cut(s)	112, 163, 348, 492
SfcI	CTRYAG	2 cut(s)	118, 482
SmlI	CTYRAG	1 cut(s)	450
SmoI	CTYRAG	1 cut(s)	450
Sse9I	AATT	4 cut(s)	195, 227, 389, 429
SsiI	CCGC	1 cut(s)	89
StyD4I	CCNGG	2 cut(s)	15, 157
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	3 cut(s)	236, 305, 405
TaqII	GACCGA	1 cut(s)	471
TasI	AATT	4 cut(s)	195, 227, 389, 429
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	2 cut(s)	36, 429
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	1 cut(s)	240
TspGWI	ACGGA	1 cut(s)	432
TspRI	CASTG	2 cut(s)	36, 429
XapI	RAATTY	1 cut(s)	429
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.