MD13G1008800.v1.1

Oxygen evolving enhancer protein 3 (PsbQ)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0009685
Physical Location & Seq
Forward (+)
541910 .. 543271
1362 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1008800.v1.1.491

Sequence Viewer

Length: 384 bp
ATGACATATCCTCGTTTTCCAGAACACCGTTCAGGGCATGGTAAAATGGTGGACATGCAATTAAAGGGAAGTGCTTGCAGGATTAAGAAGTGTGCTTTCGATTTACTGTCAATCGGGAACGATCTGACGAACGACGATCACTCGTGGGAGTTGATGGGAAGGGATCTCCGCCTCAAATCCACGTTCTTGTACTGTGATCTTAATCAGATGATCTCTCGTTCACCAAGGGACCAGAAGAGAGCTCTCACTGAACTTGCCAACAAACTGTTTTGCTCCATTGAAGAGTTGGACCATGCAGTGAAAATTCAAAGCCTGCCGTTGACCCAGGATCGATACAATGAGGCTGCTGTCATTTTACAGGAGGTGATGGCTCTCGCGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 ko01100 map00195 map01100
Pfam Domains
Protein Families
PsbQ

Protein Analysis

128

Amino Acids

14.55

Weight (kDa)

6.89

Isoelectric Point (pI)

49.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbQ PF05757 17 - 125 9.1e-26 Oxygen evolving enhancer protein 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 377
AciI CCGC 1 cut(s) 169
AclWI GGATC 2 cut(s) 171, 336
AcsI RAATTY 1 cut(s) 303
AfaI GTAC 1 cut(s) 191
AgsI TTSAA 2 cut(s) 281, 308
AjnI CCWGG 1 cut(s) 324
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
Alw21I GWGCWC 1 cut(s) 244
AlwI GGATC 2 cut(s) 171, 336
ApeKI GCWGC 1 cut(s) 344
ApoI RAATTY 1 cut(s) 303
AspLEI GCGC 1 cut(s) 379
AspS9I GGNCC 2 cut(s) 229, 289
AsuHPI GGTGA 2 cut(s) 213, 376
AvaII GGWCC 2 cut(s) 229, 289
BanII GRGCYC 1 cut(s) 244
BauI CACGAG 1 cut(s) 142
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 1 cut(s) 331
BccI CCATC 2 cut(s) 148, 361
BceAI ACGGC 1 cut(s) 301
BciT130I CCWGG 1 cut(s) 326
BisI GCNGC 1 cut(s) 345
BlsI GCNGC 1 cut(s) 346
Bme1390I CCNGG 1 cut(s) 326
Bme18I GGWCC 2 cut(s) 229, 289
BmgT120I GGNCC 2 cut(s) 229, 289
BmiI GGNNCC 1 cut(s) 230
BmrFI CCNGG 1 cut(s) 326
Bsa29I ATCGAT 1 cut(s) 331
BsaBI GATNNNNATC 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 224, 324
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 1 cut(s) 326
BseCI ATCGAT 1 cut(s) 331
BseDI CCNNGG 2 cut(s) 224, 324
BseJI GATNNNNATC 1 cut(s) 201
BseXI GCAGC 1 cut(s) 331
Bsh1236I CGCG 1 cut(s) 377
BshVI ATCGAT 1 cut(s) 331
BsiHKAI GWGCWC 1 cut(s) 244
BslFI GGGAC 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 244
Bsp143I GATC 6 cut(s) 121, 136, 163, 196, 210, 328
BspACI CCGC 1 cut(s) 169
BspDI ATCGAT 1 cut(s) 331
BspFNI CGCG 1 cut(s) 377
BspLI GGNNCC 1 cut(s) 230
BspPI GGATC 2 cut(s) 171, 336
BssECI CCNNGG 2 cut(s) 224, 324
BssMI GATC 6 cut(s) 121, 136, 163, 196, 210, 328
BssSI CACGAG 1 cut(s) 142
BssT1I CCWWGG 1 cut(s) 224
Bst2BI CACGAG 1 cut(s) 142
Bst2UI CCWGG 1 cut(s) 326
Bst4CI ACNGT 4 cut(s) 29, 108, 194, 267
Bst6I CTCTTC 2 cut(s) 230, 276
BstC8I GCNNGC 2 cut(s) 76, 314
BstFNI CGCG 1 cut(s) 377
BstHHI GCGC 1 cut(s) 379
BstKTI GATC 6 cut(s) 124, 139, 166, 199, 213, 331
BstMBI GATC 6 cut(s) 121, 136, 163, 196, 210, 328
BstNI CCWGG 1 cut(s) 326
BstNSI RCATGY 1 cut(s) 58
BstSCI CCNGG 1 cut(s) 324
BstUI CGCG 1 cut(s) 377
BstV1I GCAGC 1 cut(s) 331
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
Bsu15I ATCGAT 1 cut(s) 331
BsuTUI ATCGAT 1 cut(s) 331
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 2 cut(s) 246, 303
Cac8I GCNNGC 2 cut(s) 76, 314
CfoI GCGC 1 cut(s) 379
Cfr13I GGNCC 2 cut(s) 229, 289
ClaI ATCGAT 1 cut(s) 331
Csp6I GTAC 1 cut(s) 190
CviAII CATG 3 cut(s) 38, 55, 293
CviJI RGCY 4 cut(s) 242, 312, 344, 371
CviKI_1 RGCY 4 cut(s) 242, 312, 344, 371
CviQI GTAC 1 cut(s) 190
DpnI GATC 6 cut(s) 123, 138, 165, 198, 212, 330
DpnII GATC 6 cut(s) 121, 136, 163, 196, 210, 328
Eam1104I CTCTTC 2 cut(s) 230, 276
EarI CTCTTC 2 cut(s) 230, 276
EciI GGCGGA 1 cut(s) 158
Ecl136II GAGCTC 1 cut(s) 242
Eco130I CCWWGG 1 cut(s) 224
Eco24I GRGCYC 1 cut(s) 244
Eco47I GGWCC 2 cut(s) 229, 289
Eco53kI GAGCTC 1 cut(s) 242
EcoICRI GAGCTC 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 324
EcoT14I CCWWGG 1 cut(s) 224
EcoT38I GRGCYC 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 224
FaeI CATG 3 cut(s) 41, 58, 296
FaiI YATR 4 cut(s) 7, 39, 56, 294
FaqI GGGAC 1 cut(s) 242
FatI CATG 3 cut(s) 37, 54, 292
Fnu4HI GCNGC 1 cut(s) 345
FriOI GRGCYC 1 cut(s) 244
Fsp4HI GCNGC 1 cut(s) 345
GlaI GCGC 1 cut(s) 378
GluI GCNGC 1 cut(s) 345
HhaI GCGC 1 cut(s) 379
Hin1II CATG 3 cut(s) 41, 58, 296
Hin6I GCGC 1 cut(s) 377
HinP1I GCGC 1 cut(s) 377
HincII GTYRAC 1 cut(s) 321
HindII GTYRAC 1 cut(s) 321
HphI GGTGA 2 cut(s) 213, 376
Hpy166II GTNNAC 3 cut(s) 52, 221, 321
Hpy188I TCNGA 2 cut(s) 126, 207
Hpy188III TCNNGA 2 cut(s) 20, 115
Hpy8I GTNNAC 3 cut(s) 52, 221, 321
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 1 cut(s) 153
HpyCH4III ACNGT 4 cut(s) 29, 108, 194, 267
HpyCH4IV ACGT 1 cut(s) 182
HpyCH4V TGCA 3 cut(s) 58, 78, 296
HpySE526I ACGT 1 cut(s) 182
Hsp92II CATG 3 cut(s) 41, 58, 296
HspAI GCGC 1 cut(s) 377
Kzo9I GATC 6 cut(s) 121, 136, 163, 196, 210, 328
LmnI GCTCC 1 cut(s) 278
LpnPI CCDG 8 cut(s) 18, 33, 64, 245, 311, 326, 338, 344
Lsp1109I GCAGC 1 cut(s) 331
MaeII ACGT 1 cut(s) 182
MalI GATC 6 cut(s) 123, 138, 165, 198, 212, 330
MboI GATC 6 cut(s) 121, 136, 163, 196, 210, 328
MboII GAAGA 2 cut(s) 247, 293
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 2 cut(s) 59, 303
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 4 cut(s) 21, 182, 334, 355
MseI TTAA 4 cut(s) 62, 84, 201, 382
MspR9I CCNGG 1 cut(s) 326
MvaI CCWGG 1 cut(s) 326
MvnI CGCG 1 cut(s) 377
NdeII GATC 6 cut(s) 121, 136, 163, 196, 210, 328
NlaIII CATG 3 cut(s) 41, 58, 296
NlaIV GGNNCC 1 cut(s) 230
NspI RCATGY 1 cut(s) 58
PkrI GCNGC 1 cut(s) 346
Psp124BI GAGCTC 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 324
PspGI CCWGG 1 cut(s) 324
PspN4I GGNNCC 1 cut(s) 230
PspPI GGNCC 2 cut(s) 229, 289
PsuI RGATCY 1 cut(s) 163
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
SacI GAGCTC 1 cut(s) 244
SaqAI TTAA 4 cut(s) 62, 84, 201, 382
SatI GCNGC 1 cut(s) 345
Sau3AI GATC 6 cut(s) 121, 136, 163, 196, 210, 328
Sau96I GGNCC 2 cut(s) 229, 289
ScrFI CCNGG 1 cut(s) 326
SduI GDGCHC 1 cut(s) 244
SetI ASST 3 cut(s) 185, 244, 366
SinI GGWCC 2 cut(s) 229, 289
Sse9I AATT 2 cut(s) 59, 303
SsiI CCGC 1 cut(s) 169
SstI GAGCTC 1 cut(s) 244
StyD4I CCNGG 1 cut(s) 324
StyI CCWWGG 1 cut(s) 224
TaaI ACNGT 4 cut(s) 29, 108, 194, 267
TaiI ACGT 1 cut(s) 185
TaqI TCGA 2 cut(s) 99, 331
TasI AATT 2 cut(s) 59, 303
TatI WGTACW 1 cut(s) 189
Tru1I TTAA 4 cut(s) 62, 84, 201, 382
Tru9I TTAA 4 cut(s) 62, 84, 201, 382
TscAI CASTG 2 cut(s) 253, 303
TseI GCWGC 1 cut(s) 344
TspRI CASTG 2 cut(s) 253, 303
VpaK11BI GGWCC 2 cut(s) 229, 289
XapI RAATTY 1 cut(s) 303
XceI RCATGY 1 cut(s) 58
XcmI CCANNNNNNNNNTGG 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.