Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008132

Physical Location & Seq

Genomic Coordinates Forward (+)

33414121 .. 33416685

Gene Structure 2565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g36500.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGTTTGGAGTTACTACTAGTGATGGGAGTAGGAGACGTTTACCGCAATGGATGCTGGGCGGGTCATCTGCCGGCCAGGAGAGGAAGTCCGGCAATGTTGAAGAAAAGGGCGACCGGCTTGATGAAGGACTTGCTTCTCAAGAAGCAGAGACTGTGACTGCAAAACCTGGTAAAGGGATCCAGCATCGTAAAAAGGAAACACTGGGAGAAGGCTTGCATGTTCTTCAAAAGTGTGAGGCAAAGAAAAGAAAGAGAAAATTGACTGAACAAGATGAAGACTTGGAAGGTAACGACCCGGAGGCTGTTCTTGAGAAGAAATGTAGTGGGCGTGGGAGGAGAAAAGTTAACGAGTCTGTTGCTCCGGATAGGGAAAAGGCAAAGGCTCCTGGAAAAGGGTTCCATGAGAAGGAACCATTTGGGGAGAGCTCACACATTCTTGCAAAATGTGAGACAAAAAGGAATAGAAGTAAAACAAATGAACAAGATACAGAGTTTGATGGCAATGTCCTTGCAAGTCTTCCAGAGAAGATTGGACGCGAGAGAAGAAAACGTCTAGAACCAGCTGTCCTGAAGAGACACGAAGCAAAGGATTCTAGCTGTGGAAGTGGTGAGGAACTAGAAGTCCAAACTTCGAGTGATGATGATGTTGAACTGACAGCAGAAGATTTAGTGATGATTGCTGAAGAGTACATAAAAGCTGATCGGAAATTAGAGCCAGAAAAAGCATCAAATCGAGAATGTGAATCAGGCAGCAGACTTGCACTAAGTGTCGCTTCCAGTAATAAGTTAGACGATTCTATGGACTCCCAGAACTGTAATGAAAGATCACTGATCCAAGATGCTACCAGTTCTATGCCTAACGGGAGTTTGGCTAGTGAAAAAAATGTCTTTAACTCCAGTGGAACAGGGGATCCAGCTCAGGACATGCTGGATCTGTTCTTAGGGCCCTGGCTGAAGAAACCTGTCGAGAAGGAAGCAAAGACTGACATTCTGACAGACAATCTGGCATTCTCCTACGAACTTGAATCAAAAACTCGTAGTAATGTCGTTAAAGAAGAAACTGCCCCCATAACGAAGAAGAAAACCAGTCTGAAAGACAAGGTGGCAATGTTACTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

374

Amino Acids

41.24

Weight (kDa)

5.73

Isoelectric Point (pI)

51.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008132)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36500 FvH4_4g36500
malus_domestica	MD13G1008600.v1.1
prunus_persica	Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1
pyrus_communis	pycom13g00720
rosa_chinensis	RchiOBHm_Chr4g0446261
rosa_laevigata	RLG00000005676
rosa_multiflora	Rmu_co8265537.1_g000001 Rmu_sc0022410.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386660
rosa_rugosa	Rorug04G0369100 Rorug04G0369200 Rorug04G0369300
rosa_samantha	Rh4AG431100 Rh4BG440500 Rh4CG457800 Rh4DG439000
rosa_wichuraiana	Rw4G036830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	537
AccIII	TCCGGA	1 cut(s)	361
AciI	CCGC	2 cut(s)	44, 60
AclWI	GGATC	6 cut(s)	172, 185, 826, 905, 918, 939
AcoI	YGGCCR	1 cut(s)	73
AcuI	CTGAAG	3 cut(s)	590, 702, 974
AdeI	CACNNNGTG	1 cut(s)	767
AfaI	GTAC	1 cut(s)	689
AfiI	CCNNNNNNNGG	3 cut(s)	173, 392, 406
AgsI	TTSAA	4 cut(s)	101, 227, 650, 1025
AhlI	ACTAGT	1 cut(s)	17
AjnI	CCWGG	4 cut(s)	75, 166, 385, 947
AloI	GAACNNNNNNTCC	6 cut(s)	549, 581, 606, 638, 895, 927
AluBI	AGCT	5 cut(s)	426, 563, 597, 698, 917
AluI	AGCT	5 cut(s)	426, 563, 597, 698, 917
Alw21I	GWGCWC	1 cut(s)	428
Alw26I	GTCTC	4 cut(s)	28, 143, 443, 568
AlwI	GGATC	6 cut(s)	172, 185, 826, 905, 918, 939
AlwNI	CAGNNNCTG	1 cut(s)	152
Aor13HI	TCCGGA	1 cut(s)	361
AoxI	GGCC	2 cut(s)	73, 944
ApaI	GGGCCC	1 cut(s)	948
ApeKI	GCWGC	1 cut(s)	750
AspS9I	GGNCC	2 cut(s)	944, 945
AsuC2I	CCSGG	1 cut(s)	296
AsuHPI	GGTGA	1 cut(s)	620
BaeGI	GKGCMC	1 cut(s)	948
BamHI	GGATCC	2 cut(s)	177, 910
BanII	GRGCYC	2 cut(s)	428, 948
BbsI	GAAGAC	2 cut(s)	282, 509
Bbv12I	GWGCWC	1 cut(s)	428
BbvI	GCAGC	1 cut(s)	762
BccI	CCATC	2 cut(s)	17, 491
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BciT130I	CCWGG	4 cut(s)	77, 168, 387, 949
BcnI	CCSGG	1 cut(s)	296
BcoDI	GTCTC	4 cut(s)	28, 143, 443, 568
BcuI	ACTAGT	1 cut(s)	17
BfaI	CTAG	5 cut(s)	18, 554, 594, 617, 873
BisI	GCNGC	1 cut(s)	751
BlsI	GCNGC	1 cut(s)	752
Bme1390I	CCNGG	5 cut(s)	77, 168, 296, 387, 949
BmgT120I	GGNCC	2 cut(s)	944, 945
BmiI	GGNNCC	6 cut(s)	179, 384, 398, 411, 912, 946
BmrFI	CCNGG	5 cut(s)	77, 168, 296, 387, 949
BmrI	ACTGGG	1 cut(s)	212
BmsI	GCATC	4 cut(s)	42, 193, 734, 829
BmuI	ACTGGG	1 cut(s)	212
BpiI	GAAGAC	2 cut(s)	282, 509
BpmI	CTGGAG	1 cut(s)	880
Bpu10I	CCTNAGC	1 cut(s)	918
BpuEI	CTTGAG	2 cut(s)	123, 329
BpuMI	CCSGG	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	947
BsaWI	WCCGGW	1 cut(s)	361
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 392, 406
Bse118I	RCCGGY	2 cut(s)	71, 114
Bse1I	ACTGG	5 cut(s)	207, 777, 846, 897, 1086
Bse3DI	GCAATG	4 cut(s)	53, 100, 508, 1113
BseAI	TCCGGA	1 cut(s)	361
BseBI	CCWGG	4 cut(s)	77, 168, 387, 949
BseDI	CCNNGG	1 cut(s)	947
BseGI	GGATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	3 cut(s)	173, 392, 406
BseMI	GCAATG	4 cut(s)	53, 100, 508, 1113
BseMII	CTCAG	1 cut(s)	932
BseNI	ACTGG	5 cut(s)	207, 777, 846, 897, 1086
BseRI	GAGGAG	1 cut(s)	349
BseSI	GKGCMC	1 cut(s)	948
BseXI	GCAGC	1 cut(s)	762
BseYI	CCCAGC	1 cut(s)	55
Bsh1236I	CGCG	1 cut(s)	537
Bsh1285I	CGRYCG	1 cut(s)	115
BshFI	GGCC	2 cut(s)	75, 946
BsiEI	CGRYCG	1 cut(s)	115
BsiHKAI	GWGCWC	1 cut(s)	428
BsiSI	CCGG	5 cut(s)	72, 90, 115, 296, 362
BslI	CCNNNNNNNGG	3 cut(s)	173, 392, 406
BsmAI	GTCTC	4 cut(s)	28, 143, 443, 568
BsmBI	CGTCTC	1 cut(s)	28
BsmI	GAATGC	1 cut(s)	1007
BsnI	GGCC	2 cut(s)	75, 946
Bsp120I	GGGCCC	1 cut(s)	944
Bsp1286I	GDGCHC	2 cut(s)	428, 948
Bsp13I	TCCGGA	1 cut(s)	361
Bsp143I	GATC	6 cut(s)	177, 700, 824, 831, 910, 931
BspACI	CCGC	2 cut(s)	44, 60
BspANI	GGCC	2 cut(s)	75, 946
BspCNI	CTCAG	1 cut(s)	931
BspEI	TCCGGA	1 cut(s)	361
BspFNI	CGCG	1 cut(s)	537
BspLI	GGNNCC	6 cut(s)	179, 384, 398, 411, 912, 946
BspPI	GGATC	6 cut(s)	172, 185, 826, 905, 918, 939
BsrDI	GCAATG	4 cut(s)	53, 100, 508, 1113
BsrFI	RCCGGY	2 cut(s)	71, 114
BsrI	ACTGG	5 cut(s)	207, 777, 846, 897, 1086
BssAI	RCCGGY	2 cut(s)	71, 114
BssECI	CCNNGG	1 cut(s)	947
BssMI	GATC	6 cut(s)	177, 700, 824, 831, 910, 931
Bst2UI	CCWGG	4 cut(s)	77, 168, 387, 949
Bst4CI	ACNGT	2 cut(s)	154, 815
Bst6I	CTCTTC	2 cut(s)	566, 678
BstAPI	GCANNNNNTGC	1 cut(s)	52
BstC8I	GCNNGC	2 cut(s)	73, 215
BstDEI	CTNAG	3 cut(s)	764, 918, 940
BstENI	CCTNNNNNAGG	2 cut(s)	171, 390
BstF5I	GGATG	1 cut(s)	57
BstFNI	CGCG	1 cut(s)	537
BstKTI	GATC	6 cut(s)	180, 703, 827, 834, 913, 934
BstMAI	GTCTC	4 cut(s)	28, 143, 443, 568
BstMBI	GATC	6 cut(s)	177, 700, 824, 831, 910, 931
BstMCI	CGRYCG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstNI	CCWGG	4 cut(s)	77, 168, 387, 949
BstNSI	RCATGY	2 cut(s)	221, 928
BstSCI	CCNGG	5 cut(s)	75, 166, 294, 385, 947
BstSLI	GKGCMC	1 cut(s)	948
BstUI	CGCG	1 cut(s)	537
BstV1I	GCAGC	1 cut(s)	762
BstV2I	GAAGAC	2 cut(s)	282, 509
BstX2I	RGATCY	3 cut(s)	177, 910, 931
BstYI	RGATCY	3 cut(s)	177, 910, 931
BsuRI	GGCC	2 cut(s)	75, 946
BtsCI	GGATG	1 cut(s)	57
BtsIMutI	CAGTG	3 cut(s)	200, 827, 904
Cac8I	GCNNGC	2 cut(s)	73, 215
CaiI	CAGNNNCTG	1 cut(s)	152
Cfr10I	RCCGGY	2 cut(s)	71, 114
Cfr13I	GGNCC	2 cut(s)	944, 945
CseI	GACGC	1 cut(s)	543
CsiI	ACCWGGT	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	688
CviAII	CATG	3 cut(s)	218, 401, 925
CviQI	GTAC	1 cut(s)	688
DdeI	CTNAG	3 cut(s)	764, 918, 940
DpnI	GATC	6 cut(s)	179, 702, 826, 833, 912, 933
DpnII	GATC	6 cut(s)	177, 700, 824, 831, 910, 931
DraIII	CACNNNGTG	1 cut(s)	767
EaeI	YGGCCR	1 cut(s)	73
Eam1104I	CTCTTC	2 cut(s)	566, 678
EarI	CTCTTC	2 cut(s)	566, 678
Ecl136II	GAGCTC	1 cut(s)	426
Eco24I	GRGCYC	2 cut(s)	428, 948
Eco53kI	GAGCTC	1 cut(s)	426
Eco57I	CTGAAG	3 cut(s)	590, 702, 974
EcoICRI	GAGCTC	1 cut(s)	426
EcoNI	CCTNNNNNAGG	2 cut(s)	171, 390
EcoO109I	RGGNCCY	2 cut(s)	944, 945
EcoRII	CCWGG	4 cut(s)	75, 166, 385, 947
EcoT38I	GRGCYC	2 cut(s)	428, 948
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	3 cut(s)	221, 404, 928
FaiI	YATR	7 cut(s)	219, 402, 692, 800, 854, 926, 1070
FalI	AAGNNNNNCTT	2 cut(s)	757, 789
FatI	CATG	3 cut(s)	217, 400, 924
FauI	CCCGC	1 cut(s)	53
Fnu4HI	GCNGC	1 cut(s)	751
FokI	GGATG	1 cut(s)	64
FriOI	GRGCYC	2 cut(s)	428, 948
Fsp4HI	GCNGC	1 cut(s)	751
FspBI	CTAG	5 cut(s)	18, 554, 594, 617, 873
GluI	GCNGC	1 cut(s)	751
GsaI	CCCAGC	1 cut(s)	59
GsuI	CTGGAG	1 cut(s)	880
HaeIII	GGCC	2 cut(s)	75, 946
HapII	CCGG	5 cut(s)	72, 90, 115, 296, 362
HgaI	GACGC	1 cut(s)	543
Hin1II	CATG	3 cut(s)	221, 404, 928
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HinfI	GANTC	6 cut(s)	350, 590, 743, 794, 803, 1025
HpaI	GTTAAC	1 cut(s)	346
HpaII	CCGG	5 cut(s)	72, 90, 115, 296, 362
HphI	GGTGA	1 cut(s)	620
Hpy166II	GTNNAC	2 cut(s)	41, 346
Hpy188I	TCNGA	3 cut(s)	705, 993, 1092
Hpy188III	TCNNGA	9 cut(s)	140, 308, 362, 521, 554, 568, 734, 920, 967
Hpy8I	GTNNAC	2 cut(s)	41, 346
HpyAV	CCTTC	5 cut(s)	119, 203, 278, 400, 964
HpyCH4III	ACNGT	2 cut(s)	154, 815
HpyCH4IV	ACGT	2 cut(s)	37, 550
HpyCH4V	TGCA	5 cut(s)	161, 217, 440, 512, 761
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	3 cut(s)	764, 918, 940
HpySE526I	ACGT	2 cut(s)	37, 550
Hsp92II	CATG	3 cut(s)	221, 404, 928
Kpn2I	TCCGGA	1 cut(s)	361
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
KspAI	GTTAAC	1 cut(s)	346
Kzo9I	GATC	6 cut(s)	177, 700, 824, 831, 910, 931
LmnI	GCTCC	2 cut(s)	364, 388
Lsp1109I	GCAGC	1 cut(s)	762
LweI	GCATC	4 cut(s)	42, 193, 734, 829
MabI	ACCWGGT	1 cut(s)	166
MaeI	CTAG	5 cut(s)	18, 554, 594, 617, 873
MaeII	ACGT	2 cut(s)	37, 550
MaeIII	GTNAC	4 cut(s)	10, 154, 287, 1110
MalI	GATC	6 cut(s)	179, 702, 826, 833, 912, 933
MboI	GATC	6 cut(s)	177, 700, 824, 831, 910, 931
MflI	RGATCY	3 cut(s)	177, 910, 931
MhlI	GDGCHC	2 cut(s)	428, 948
MluCI	AATT	2 cut(s)	257, 707
MlyI	GAGTC	2 cut(s)	359, 797
MnlI	CCTC	5 cut(s)	75, 229, 292, 327, 604
MroI	TCCGGA	1 cut(s)	361
MroNI	GCCGGC	1 cut(s)	71
MseI	TTAA	3 cut(s)	345, 891, 1050
MspA1I	CMGCKG	1 cut(s)	563
MspI	CCGG	5 cut(s)	72, 90, 115, 296, 362
MspR9I	CCNGG	5 cut(s)	77, 168, 296, 387, 949
Mva1269I	GAATGC	1 cut(s)	1007
MvaI	CCWGG	4 cut(s)	77, 168, 387, 949
MvnI	CGCG	1 cut(s)	537
MwoI	GCNNNNNNNGC	1 cut(s)	52
NaeI	GCCGGC	1 cut(s)	73
NciI	CCSGG	1 cut(s)	296
NdeII	GATC	6 cut(s)	177, 700, 824, 831, 910, 931
NgoMIV	GCCGGC	1 cut(s)	71
NlaIII	CATG	3 cut(s)	221, 404, 928
NlaIV	GGNNCC	6 cut(s)	179, 384, 398, 411, 912, 946
NmuCI	GTSAC	1 cut(s)	154
NspI	RCATGY	2 cut(s)	221, 928
PctI	GAATGC	1 cut(s)	1007
PdiI	GCCGGC	1 cut(s)	73
PfeI	GAWTC	4 cut(s)	590, 743, 794, 1025
PfoI	TCCNGGA	1 cut(s)	385
PkrI	GCNGC	1 cut(s)	752
PleI	GAGTC	2 cut(s)	358, 797
PpsI	GAGTC	2 cut(s)	358, 797
Psp124BI	GAGCTC	1 cut(s)	428
Psp6I	CCWGG	4 cut(s)	75, 166, 385, 947
PspFI	CCCAGC	1 cut(s)	55
PspGI	CCWGG	4 cut(s)	75, 166, 385, 947
PspN4I	GGNNCC	6 cut(s)	179, 384, 398, 411, 912, 946
PspOMI	GGGCCC	1 cut(s)	944
PspPI	GGNCC	2 cut(s)	944, 945
PstNI	CAGNNNCTG	1 cut(s)	152
PsuI	RGATCY	3 cut(s)	177, 910, 931
PvuII	CAGCTG	1 cut(s)	563
RsaI	GTAC	1 cut(s)	689
RsaNI	GTAC	1 cut(s)	688
SacI	GAGCTC	1 cut(s)	428
SaqAI	TTAA	3 cut(s)	345, 891, 1050
SatI	GCNGC	1 cut(s)	751
Sau3AI	GATC	6 cut(s)	177, 700, 824, 831, 910, 931
Sau96I	GGNCC	2 cut(s)	944, 945
SchI	GAGTC	2 cut(s)	359, 797
ScrFI	CCNGG	5 cut(s)	77, 168, 296, 387, 949
SduI	GDGCHC	2 cut(s)	428, 948
SexAI	ACCWGGT	1 cut(s)	166
SfaNI	GCATC	4 cut(s)	42, 193, 734, 829
SmlI	CTYRAG	2 cut(s)	138, 308
SmoI	CTYRAG	2 cut(s)	138, 308
SpeI	ACTAGT	1 cut(s)	17
Sse9I	AATT	2 cut(s)	257, 707
SsiI	CCGC	2 cut(s)	44, 60
SspMI	CTAG	5 cut(s)	18, 554, 594, 617, 873
SstI	GAGCTC	1 cut(s)	428
StyD4I	CCNGG	5 cut(s)	75, 166, 294, 385, 947
TaaI	ACNGT	2 cut(s)	154, 815
TaiI	ACGT	2 cut(s)	40, 553
TaqI	TCGA	3 cut(s)	632, 733, 966
TasI	AATT	2 cut(s)	257, 707
TatI	WGTACW	1 cut(s)	687
TfiI	GAWTC	4 cut(s)	590, 743, 794, 1025
Tru1I	TTAA	3 cut(s)	345, 891, 1050
Tru9I	TTAA	3 cut(s)	345, 891, 1050
TscAI	CASTG	3 cut(s)	207, 834, 904
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	1 cut(s)	750
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	4 cut(s)	138, 288, 492, 834
TspRI	CASTG	3 cut(s)	207, 834, 904
XagI	CCTNNNNNAGG	2 cut(s)	171, 390
XbaI	TCTAGA	1 cut(s)	553
XceI	RCATGY	2 cut(s)	221, 928
XspI	CTAG	5 cut(s)	18, 554, 594, 617, 873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.