Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0008132

Physical Location & Seq

Genomic Coordinates Forward (+)

529905 .. 532689

Gene Structure 2785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1008600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGTAGGAGTTACTCCAGACGATGGAACTAGGAGACGTTTACCGCAATGGATGCTGGGCATATCTTCTGGTGTCCAAGTAAGCAAGCCTAGTAATGTTAAGGAAAATGGAAAGGAGCTTCTGGAAGGGACCCAATCTCACGAAAATCCGCATGTTCTCGTAAAATGTGCGACAAAGAGAAGAAAAAGAAAATCAACCGAACAGGATGCAGACTTTGAAGATGATGTCCCAGAAACTGTTCCAGAAAAGAAGCGTAATGGACGCGGGAGAAGAAAAGTTCAGGAGCCTGCAGCTCCAAAGAGACAAAAAGCAAAGGATCCTGGAGAAGAGATACAGCTTCATGAAAAGGAAACTCTGGAGGAGAACTCACACTTTCTTACAAAATGTGAGACAAAAAGAAGAAAAAGAAAATCAGATGAACAAGATGCAGAATTTGATGGTATCTTCCCCGAAACCTTTGCAGAGAAGAAGTGTAAGGGACTTGGGAGAAGAAAAGTTCGGGAATCTGATGCTCCAAAGAGACAAAAATTAAAGGGTTCTAGCTGTGGAAGTTATGAGGAACAAGAAGTACGGACTTCAACTGTTGATGATGTTGAACTGACGGTGGAAGATTTAGTGATCATTGCTGAAGAGTATATTGAAGCTGATAGAAATATGGAGCGAGAAGAATTACCAAACCAAGAACGTGAATCAGACAGGAGACTTGTAGAAAGAGTCTGTTCCGGTAATGTGTTCAAAGATTCTGTTGATGCCCAAAAGGGTAATCAAGGATCACTTATCCCAGATACAACTACTTCCAAGCCAAATGGGAGTTTGACAAGTACAGAAACAAAGAATTCCAGCGGGAGAGAAGATCCTGCTCAGGACATGCTGGATCTGTTTTTAGGGCCGTTGCTGAAGAAAACCGTCGAGAAGGAGACAAAGGAGAAGGACAGAAAGGCTCAAATGTTGACAGAGAATATGACATTTTCCCAAGAATTCAAAAGACAAAGTGAGAGTAATGTCATTAGAGAAGAAATTCCCCCCACCCCTGTAGTGAAGAAGAAGAGCAGTCTTAGAGACAAGGTGGCAATGTTTCTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

362

Amino Acids

41.12

Weight (kDa)

6.96

Isoelectric Point (pI)

54.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008132)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36500 FvH4_4g36500
malus_domestica	MD13G1008600.v1.1
prunus_persica	Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1
pyrus_communis	pycom13g00720
rosa_chinensis	RchiOBHm_Chr4g0446261
rosa_laevigata	RLG00000005676
rosa_multiflora	Rmu_co8265537.1_g000001 Rmu_sc0022410.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386660
rosa_rugosa	Rorug04G0369100 Rorug04G0369200 Rorug04G0369300
rosa_samantha	Rh4AG431100 Rh4BG440500 Rh4CG457800 Rh4DG439000
rosa_wichuraiana	Rw4G036830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	23
AccII	CGCG	1 cut(s)	264
AciI	CCGC	4 cut(s)	44, 149, 264, 843
AclWI	GGATC	5 cut(s)	311, 324, 778, 848, 882
AcsI	RAATTY	4 cut(s)	431, 835, 977, 1017
AcuI	CTGAAG	2 cut(s)	648, 917
AfaI	GTAC	2 cut(s)	570, 823
AfiI	CCNNNNNNNGG	1 cut(s)	23
AgsI	TTSAA	6 cut(s)	218, 579, 596, 641, 736, 982
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	5 cut(s)	118, 293, 337, 543, 644
AluI	AGCT	5 cut(s)	118, 293, 337, 543, 644
Alw26I	GTCTC	7 cut(s)	28, 295, 383, 514, 694, 911, 1053
AlwI	GGATC	5 cut(s)	311, 324, 778, 848, 882
AlwNI	CAGNNNCTG	1 cut(s)	236
AoxI	GGCC	1 cut(s)	887
ApeKI	GCWGC	1 cut(s)	290
ApoI	RAATTY	4 cut(s)	431, 835, 977, 1017
Asp700I	GAANNNNTTC	2 cut(s)	237, 1017
AspS9I	GGNCC	2 cut(s)	129, 887
AvaII	GGWCC	1 cut(s)	129
BamHI	GGATCC	1 cut(s)	316
BbvI	GCAGC	1 cut(s)	302
BccI	CCATC	2 cut(s)	17, 431
BceAI	ACGGC	1 cut(s)	874
BcgI	CGANNNNNNTGC	4 cut(s)	188, 222, 440, 474
BciT130I	CCWGG	1 cut(s)	321
BclI	TGATCA	1 cut(s)	618
BcoDI	GTCTC	7 cut(s)	28, 295, 383, 514, 694, 911, 1053
BfaI	CTAG	3 cut(s)	30, 90, 540
BfmI	CTRYAG	2 cut(s)	288, 1032
BisI	GCNGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	292
Bme1390I	CCNGG	1 cut(s)	321
Bme18I	GGWCC	1 cut(s)	129
BmgT120I	GGNCC	2 cut(s)	129, 887
BmiI	GGNNCC	4 cut(s)	130, 131, 285, 318
BmrFI	CCNGG	1 cut(s)	321
BmsI	GCATC	5 cut(s)	42, 196, 415, 499, 739
BplI	GAGNNNNNCTC	2 cut(s)	350, 382
BpmI	CTGGAG	2 cut(s)	342, 377
Bpu10I	CCTNAGC	1 cut(s)	861
BsaWI	WCCGGW	1 cut(s)	722
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse3DI	GCAATG	3 cut(s)	53, 621, 1077
BseBI	CCWGG	1 cut(s)	321
BseGI	GGATG	2 cut(s)	57, 211
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMI	GCAATG	3 cut(s)	53, 621, 1077
BseMII	CTCAG	1 cut(s)	875
BseRI	GAGGAG	1 cut(s)	374
BseXI	GCAGC	1 cut(s)	302
BseYI	CCCAGC	1 cut(s)	55
Bsh1236I	CGCG	1 cut(s)	264
BshFI	GGCC	1 cut(s)	889
BsiSI	CCGG	1 cut(s)	723
BslFI	GGGAC	3 cut(s)	142, 212, 492
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmAI	GTCTC	7 cut(s)	28, 295, 383, 514, 694, 911, 1053
BsmBI	CGTCTC	1 cut(s)	28
BsmFI	GGGAC	3 cut(s)	142, 212, 492
BsnI	GGCC	1 cut(s)	889
Bsp143I	GATC	5 cut(s)	316, 618, 770, 853, 874
BspACI	CCGC	4 cut(s)	44, 149, 264, 843
BspANI	GGCC	1 cut(s)	889
BspCNI	CTCAG	1 cut(s)	874
BspFNI	CGCG	1 cut(s)	264
BspHI	TCATGA	1 cut(s)	340
BspLI	GGNNCC	4 cut(s)	130, 131, 285, 318
BspMAI	CTGCAG	1 cut(s)	292
BspPI	GGATC	5 cut(s)	311, 324, 778, 848, 882
BspQI	GCTCTTC	1 cut(s)	1040
BsrDI	GCAATG	3 cut(s)	53, 621, 1077
BssMI	GATC	5 cut(s)	316, 618, 770, 853, 874
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	4 cut(s)	238, 583, 604, 907
Bst6I	CTCTTC	3 cut(s)	321, 624, 1040
BstAPI	GCANNNNNTGC	1 cut(s)	52
BstC8I	GCNNGC	2 cut(s)	86, 288
BstDEI	CTNAG	2 cut(s)	861, 1055
BstF5I	GGATG	2 cut(s)	57, 211
BstFNI	CGCG	1 cut(s)	264
BstKTI	GATC	5 cut(s)	319, 621, 773, 856, 877
BstMAI	GTCTC	7 cut(s)	28, 295, 383, 514, 694, 911, 1053
BstMBI	GATC	5 cut(s)	316, 618, 770, 853, 874
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstNI	CCWGG	1 cut(s)	321
BstNSI	RCATGY	2 cut(s)	155, 871
BstSCI	CCNGG	1 cut(s)	319
BstSFI	CTRYAG	2 cut(s)	288, 1032
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	1 cut(s)	302
BstX2I	RGATCY	3 cut(s)	316, 853, 874
BstYI	RGATCY	3 cut(s)	316, 853, 874
BsuRI	GGCC	1 cut(s)	889
BtsCI	GGATG	2 cut(s)	57, 211
Cac8I	GCNNGC	2 cut(s)	86, 288
CaiI	CAGNNNCTG	1 cut(s)	236
CciI	TCATGA	1 cut(s)	340
Cfr13I	GGNCC	2 cut(s)	129, 887
CseI	GACGC	1 cut(s)	270
Csp6I	GTAC	2 cut(s)	569, 822
CviAII	CATG	3 cut(s)	152, 341, 868
CviQI	GTAC	2 cut(s)	569, 822
DdeI	CTNAG	2 cut(s)	861, 1055
DpnI	GATC	5 cut(s)	318, 620, 772, 855, 876
DpnII	GATC	5 cut(s)	316, 618, 770, 853, 874
Eam1104I	CTCTTC	3 cut(s)	321, 624, 1040
EarI	CTCTTC	3 cut(s)	321, 624, 1040
Eco47I	GGWCC	1 cut(s)	129
Eco57I	CTGAAG	2 cut(s)	648, 917
EcoO109I	RGGNCCY	1 cut(s)	129
EcoRI	GAATTC	2 cut(s)	835, 977
EcoRII	CCWGG	1 cut(s)	319
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	3 cut(s)	155, 344, 871
FaiI	YATR	8 cut(s)	62, 153, 342, 555, 636, 656, 869, 962
FalI	AAGNNNNNCTT	2 cut(s)	759, 791
FaqI	GGGAC	3 cut(s)	142, 212, 492
FatI	CATG	3 cut(s)	151, 340, 867
FauI	CCCGC	2 cut(s)	257, 836
FbaI	TGATCA	1 cut(s)	618
Fnu4HI	GCNGC	1 cut(s)	291
FokI	GGATG	2 cut(s)	64, 218
Fsp4HI	GCNGC	1 cut(s)	291
FspBI	CTAG	3 cut(s)	30, 90, 540
GluI	GCNGC	1 cut(s)	291
GsaI	CCCAGC	1 cut(s)	59
GsuI	CTGGAG	2 cut(s)	342, 377
HaeIII	GGCC	1 cut(s)	889
HapII	CCGG	1 cut(s)	723
HgaI	GACGC	1 cut(s)	270
Hin1II	CATG	3 cut(s)	155, 344, 871
HincII	GTYRAC	1 cut(s)	951
HindII	GTYRAC	1 cut(s)	951
HinfI	GANTC	4 cut(s)	503, 689, 714, 740
HpaII	CCGG	1 cut(s)	723
Hpy166II	GTNNAC	2 cut(s)	41, 951
Hpy188I	TCNGA	3 cut(s)	415, 508, 694
Hpy8I	GTNNAC	2 cut(s)	41, 951
Hpy99I	CGWCG	1 cut(s)	911
HpyAV	CCTTC	3 cut(s)	119, 907, 922
HpyCH4III	ACNGT	4 cut(s)	238, 583, 604, 907
HpyCH4IV	ACGT	2 cut(s)	37, 685
HpyCH4V	TGCA	4 cut(s)	209, 290, 428, 461
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	2 cut(s)	861, 1055
HpySE526I	ACGT	2 cut(s)	37, 685
Hsp92II	CATG	3 cut(s)	155, 344, 871
KflI	GGGWCCC	1 cut(s)	129
Ksp22I	TGATCA	1 cut(s)	618
Kzo9I	GATC	5 cut(s)	316, 618, 770, 853, 874
LguI	GCTCTTC	1 cut(s)	1040
LmnI	GCTCC	5 cut(s)	115, 283, 298, 517, 658
Lsp1109I	GCAGC	1 cut(s)	302
LweI	GCATC	5 cut(s)	42, 196, 415, 499, 739
MaeI	CTAG	3 cut(s)	30, 90, 540
MaeII	ACGT	2 cut(s)	37, 685
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	5 cut(s)	318, 620, 772, 855, 876
MboI	GATC	5 cut(s)	316, 618, 770, 853, 874
MflI	RGATCY	3 cut(s)	316, 853, 874
MluCI	AATT	6 cut(s)	431, 527, 668, 835, 977, 1017
MlyI	GAGTC	1 cut(s)	723
MnlI	CCTC	2 cut(s)	352, 550
MroXI	GAANNNNTTC	2 cut(s)	237, 1017
MseI	TTAA	2 cut(s)	99, 530
MspA1I	CMGCKG	1 cut(s)	843
MspI	CCGG	1 cut(s)	723
MspR9I	CCNGG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	321
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	52
NdeII	GATC	5 cut(s)	316, 618, 770, 853, 874
NlaIII	CATG	3 cut(s)	155, 344, 871
NlaIV	GGNNCC	4 cut(s)	130, 131, 285, 318
NspI	RCATGY	2 cut(s)	155, 871
PagI	TCATGA	1 cut(s)	340
PciSI	GCTCTTC	1 cut(s)	1040
PdmI	GAANNNNTTC	2 cut(s)	237, 1017
PfeI	GAWTC	3 cut(s)	503, 689, 740
PflMI	CCANNNNNTGG	1 cut(s)	23
PfoI	TCCNGGA	1 cut(s)	319
PkrI	GCNGC	1 cut(s)	292
PleI	GAGTC	1 cut(s)	722
PpsI	GAGTC	1 cut(s)	722
PpuMI	RGGWCCY	1 cut(s)	129
Psp5II	RGGWCCY	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	319
PspFI	CCCAGC	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	4 cut(s)	130, 131, 285, 318
PspPI	GGNCC	2 cut(s)	129, 887
PspPPI	RGGWCCY	1 cut(s)	129
PsrI	GAACNNNNNNTAC	2 cut(s)	552, 584
PstI	CTGCAG	1 cut(s)	292
PstNI	CAGNNNCTG	1 cut(s)	236
PsuI	RGATCY	3 cut(s)	316, 853, 874
RsaI	GTAC	2 cut(s)	570, 823
RsaNI	GTAC	2 cut(s)	569, 822
SapI	GCTCTTC	1 cut(s)	1040
SaqAI	TTAA	2 cut(s)	99, 530
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	5 cut(s)	316, 618, 770, 853, 874
Sau96I	GGNCC	2 cut(s)	129, 887
SchI	GAGTC	1 cut(s)	723
ScrFI	CCNGG	1 cut(s)	321
SetI	ASST	9 cut(s)	40, 120, 295, 339, 458, 545, 646, 688, 1068
SfaNI	GCATC	5 cut(s)	42, 196, 415, 499, 739
SfcI	CTRYAG	2 cut(s)	288, 1032
SinI	GGWCC	1 cut(s)	129
Sse9I	AATT	6 cut(s)	431, 527, 668, 835, 977, 1017
SsiI	CCGC	4 cut(s)	44, 149, 264, 843
SspMI	CTAG	3 cut(s)	30, 90, 540
StyD4I	CCNGG	1 cut(s)	319
TaaI	ACNGT	4 cut(s)	238, 583, 604, 907
TaiI	ACGT	2 cut(s)	40, 688
TaqI	TCGA	1 cut(s)	909
TasI	AATT	6 cut(s)	431, 527, 668, 835, 977, 1017
TatI	WGTACW	1 cut(s)	821
TfiI	GAWTC	3 cut(s)	503, 689, 740
Tru1I	TTAA	2 cut(s)	99, 530
Tru9I	TTAA	2 cut(s)	99, 530
TseI	GCWGC	1 cut(s)	290
TspDTI	ATGAA	3 cut(s)	329, 357, 432
TspGWI	ACGGA	1 cut(s)	586
Van91I	CCANNNNNTGG	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	129
XapI	RAATTY	4 cut(s)	431, 835, 977, 1017
XceI	RCATGY	2 cut(s)	155, 871
XmnI	GAANNNNTTC	2 cut(s)	237, 1017
XspI	CTAG	3 cut(s)	30, 90, 540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.