Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022410.1

Orthogroup ID

OG0008132

Physical Location & Seq

Genomic Coordinates Forward (+)

4 .. 701

Gene Structure 698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022410.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 698 bp

atgtttggagttactgctagtgatggaagtaggagacgtttaccgcaatggatgctgggcgggtcatctactggccaagaggggaagtccagcaatgttgaagaaaagggcaaccagcttgaggaaggacttgcttctcaagaggcagaaactgtgactgcaaaacctggtaaagggatccggcgtcgtgaaaaggaaacactgggagaaggcttgcatgttcttcaaaagtgtgaggcaaagaaaagaaagagaaaatcaactcaacaagatgaagaatttgaaggtaatgacctagtagctgttctagagaagaagtgtagtgggcgtgggagaagaaaagttcaggaatctattgctgcagataggcaaaaagcaaaggctcctggaaaagggattcatgaaaagaaaacgttgggagagaactcatacattcttgcaaaatgtgagacaaaaaggattaatagtaaaacaaatgaacaagatacggattttgatggcaacgcccctgcaagttttccagagaagattggacgtgggagaagaaaagttcaagaaacagcagtcatgaagagacaagaagcaaaggattctagctgtggaactcgtgaggaacgagaagtccagacttcaagtgatgatgatgttgaactgacagcagaagatttagtgatgattgctgaagaggttagttgctc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

25.73

Weight (kDa)

8.19

Isoelectric Point (pI)

55.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008132)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36500 FvH4_4g36500
malus_domestica	MD13G1008600.v1.1
prunus_persica	Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1
pyrus_communis	pycom13g00720
rosa_chinensis	RchiOBHm_Chr4g0446261
rosa_laevigata	RLG00000005676
rosa_multiflora	Rmu_co8265537.1_g000001 Rmu_sc0022410.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386660
rosa_rugosa	Rorug04G0369100 Rorug04G0369200 Rorug04G0369300
rosa_samantha	Rh4AG431100 Rh4BG440500 Rh4CG457800 Rh4DG439000
rosa_wichuraiana	Rw4G036830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	44, 60
AclI	AACGTT	1 cut(s)	413
AclWI	GGATC	2 cut(s)	172, 185
AcoI	YGGCCR	1 cut(s)	73
AcsI	RAATTY	1 cut(s)	278
AcyI	GRCGYC	1 cut(s)	184
AfiI	CCNNNNNNNGG	3 cut(s)	121, 173, 392
AgsI	TTSAA	6 cut(s)	101, 227, 284, 554, 633, 650
AjiI	CACGTC	1 cut(s)	536
AjnI	CCWGG	2 cut(s)	166, 385
AloI	GAACNNNNNNTCC	2 cut(s)	606, 638
AluBI	AGCT	3 cut(s)	118, 302, 597
AluI	AGCT	3 cut(s)	118, 302, 597
Alw26I	GTCTC	3 cut(s)	28, 443, 568
AlwI	GGATC	2 cut(s)	172, 185
AlwNI	CAGNNNCTG	1 cut(s)	152
AoxI	GGCC	1 cut(s)	73
ApeKI	GCWGC	1 cut(s)	359
ApoI	RAATTY	1 cut(s)	278
AseI	ATTAAT	1 cut(s)	462
BalI	TGGCCA	1 cut(s)	75
BamHI	GGATCC	1 cut(s)	177
BauI	CACGAG	1 cut(s)	606
BbvI	GCAGC	1 cut(s)	346
BccI	CCATC	2 cut(s)	17, 491
BciT130I	CCWGG	2 cut(s)	168, 387
BcoDI	GTCTC	3 cut(s)	28, 443, 568
BfaI	CTAG	4 cut(s)	18, 296, 308, 594
BfmI	CTRYAG	1 cut(s)	360
BisI	GCNGC	1 cut(s)	360
BlsI	GCNGC	1 cut(s)	361
Bme1390I	CCNGG	2 cut(s)	168, 387
BmgBI	CACGTC	1 cut(s)	536
BmiI	GGNNCC	2 cut(s)	179, 384
BmrFI	CCNGG	2 cut(s)	168, 387
BmrI	ACTGGG	1 cut(s)	212
BmsI	GCATC	1 cut(s)	42
BmuI	ACTGGG	1 cut(s)	212
BpuEI	CTTGAG	2 cut(s)	123, 140
BsaHI	GRCGYC	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 173, 392
Bse1I	ACTGG	2 cut(s)	76, 207
Bse3DI	GCAATG	2 cut(s)	53, 100
BseBI	CCWGG	2 cut(s)	168, 387
BseGI	GGATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	3 cut(s)	121, 173, 392
BseMI	GCAATG	2 cut(s)	53, 100
BseNI	ACTGG	2 cut(s)	76, 207
BseXI	GCAGC	1 cut(s)	346
BseYI	CCCAGC	1 cut(s)	55
BshFI	GGCC	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	181
BslI	CCNNNNNNNGG	3 cut(s)	121, 173, 392
BsmAI	GTCTC	3 cut(s)	28, 443, 568
BsmBI	CGTCTC	1 cut(s)	28
BsnI	GGCC	1 cut(s)	75
Bsp143I	GATC	1 cut(s)	177
BspACI	CCGC	2 cut(s)	44, 60
BspANI	GGCC	1 cut(s)	75
BspHI	TCATGA	2 cut(s)	400, 567
BspLI	GGNNCC	2 cut(s)	179, 384
BspMAI	CTGCAG	1 cut(s)	364
BspPI	GGATC	2 cut(s)	172, 185
BsrDI	GCAATG	2 cut(s)	53, 100
BsrI	ACTGG	2 cut(s)	76, 207
BssMI	GATC	1 cut(s)	177
BssNI	GRCGYC	1 cut(s)	184
BssSI	CACGAG	1 cut(s)	606
Bst2BI	CACGAG	1 cut(s)	606
Bst2UI	CCWGG	2 cut(s)	168, 387
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	2 cut(s)	566, 678
BstACI	GRCGYC	1 cut(s)	184
BstAPI	GCANNNNNTGC	1 cut(s)	52
BstC8I	GCNNGC	1 cut(s)	215
BstENI	CCTNNNNNAGG	2 cut(s)	171, 390
BstF5I	GGATG	1 cut(s)	57
BstKTI	GATC	1 cut(s)	180
BstMAI	GTCTC	3 cut(s)	28, 443, 568
BstMBI	GATC	1 cut(s)	177
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstNI	CCWGG	2 cut(s)	168, 387
BstNSI	RCATGY	1 cut(s)	221
BstSCI	CCNGG	2 cut(s)	166, 385
BstSFI	CTRYAG	1 cut(s)	360
BstV1I	GCAGC	1 cut(s)	346
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	75
BtrI	CACGTC	1 cut(s)	536
BtsCI	GGATG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	200
Cac8I	GCNNGC	1 cut(s)	215
CaiI	CAGNNNCTG	1 cut(s)	152
CciI	TCATGA	2 cut(s)	400, 567
CseI	GACGC	1 cut(s)	173
CsiI	ACCWGGT	1 cut(s)	166
CviAII	CATG	3 cut(s)	218, 401, 568
CviJI	RGCY	6 cut(s)	75, 118, 213, 302, 383, 597
CviKI_1	RGCY	6 cut(s)	75, 118, 213, 302, 383, 597
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
EaeI	YGGCCR	1 cut(s)	73
Eam1104I	CTCTTC	2 cut(s)	566, 678
EarI	CTCTTC	2 cut(s)	566, 678
EcoNI	CCTNNNNNAGG	2 cut(s)	171, 390
EcoRII	CCWGG	2 cut(s)	166, 385
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	3 cut(s)	221, 404, 571
FaiI	YATR	4 cut(s)	219, 402, 430, 569
FatI	CATG	3 cut(s)	217, 400, 567
FauI	CCCGC	1 cut(s)	53
Fnu4HI	GCNGC	1 cut(s)	360
FokI	GGATG	1 cut(s)	64
Fsp4HI	GCNGC	1 cut(s)	360
FspBI	CTAG	4 cut(s)	18, 296, 308, 594
GluI	GCNGC	1 cut(s)	360
GsaI	CCCAGC	1 cut(s)	59
HaeIII	GGCC	1 cut(s)	75
HapII	CCGG	1 cut(s)	181
HgaI	GACGC	1 cut(s)	173
Hin1I	GRCGYC	1 cut(s)	184
Hin1II	CATG	3 cut(s)	221, 404, 571
HinfI	GANTC	3 cut(s)	350, 397, 590
HpaII	CCGG	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	41
Hpy8I	GTNNAC	1 cut(s)	41
Hpy99I	CGWCG	1 cut(s)	189
HpyAV	CCTTC	3 cut(s)	119, 203, 278
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	3 cut(s)	37, 413, 535
HpyCH4V	TGCA	5 cut(s)	161, 217, 362, 440, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpySE526I	ACGT	3 cut(s)	37, 413, 535
Hsp92I	GRCGYC	1 cut(s)	184
Hsp92II	CATG	3 cut(s)	221, 404, 571
Kzo9I	GATC	1 cut(s)	177
LmnI	GCTCC	1 cut(s)	388
Lsp1109I	GCAGC	1 cut(s)	346
LweI	GCATC	1 cut(s)	42
MabI	ACCWGGT	1 cut(s)	166
MaeI	CTAG	4 cut(s)	18, 296, 308, 594
MaeII	ACGT	3 cut(s)	37, 413, 535
MaeIII	GTNAC	2 cut(s)	10, 154
MalI	GATC	1 cut(s)	179
MboI	GATC	1 cut(s)	177
MflI	RGATCY	1 cut(s)	177
MlsI	TGGCCA	1 cut(s)	75
MluCI	AATT	1 cut(s)	278
MluNI	TGGCCA	1 cut(s)	75
MnlI	CCTC	6 cut(s)	73, 115, 136, 229, 604, 679
Mox20I	TGGCCA	1 cut(s)	75
MscI	TGGCCA	1 cut(s)	75
MseI	TTAA	1 cut(s)	462
Msp20I	TGGCCA	1 cut(s)	75
MspI	CCGG	1 cut(s)	181
MspR9I	CCNGG	2 cut(s)	168, 387
MvaI	CCWGG	2 cut(s)	168, 387
MwoI	GCNNNNNNNGC	1 cut(s)	52
NdeII	GATC	1 cut(s)	177
NlaIII	CATG	3 cut(s)	221, 404, 571
NlaIV	GGNNCC	2 cut(s)	179, 384
NmuCI	GTSAC	1 cut(s)	154
NspI	RCATGY	1 cut(s)	221
PagI	TCATGA	2 cut(s)	400, 567
PcsI	WCGNNNNNNNCGW	1 cut(s)	613
PfeI	GAWTC	3 cut(s)	350, 397, 590
PfoI	TCCNGGA	1 cut(s)	385
PkrI	GCNGC	1 cut(s)	361
PshBI	ATTAAT	1 cut(s)	462
Psp1406I	AACGTT	1 cut(s)	413
Psp6I	CCWGG	2 cut(s)	166, 385
PspFI	CCCAGC	1 cut(s)	55
PspGI	CCWGG	2 cut(s)	166, 385
PspN4I	GGNNCC	2 cut(s)	179, 384
PstI	CTGCAG	1 cut(s)	364
PstNI	CAGNNNCTG	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	1 cut(s)	360
Sau3AI	GATC	1 cut(s)	177
ScrFI	CCNGG	2 cut(s)	168, 387
SexAI	ACCWGGT	1 cut(s)	166
SfaNI	GCATC	1 cut(s)	42
SfcI	CTRYAG	1 cut(s)	360
SmlI	CTYRAG	2 cut(s)	119, 138
SmoI	CTYRAG	2 cut(s)	119, 138
Sse9I	AATT	1 cut(s)	278
SsiI	CCGC	2 cut(s)	44, 60
SspMI	CTAG	4 cut(s)	18, 296, 308, 594
StyD4I	CCNGG	2 cut(s)	166, 385
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	3 cut(s)	40, 416, 538
TasI	AATT	1 cut(s)	278
TfiI	GAWTC	3 cut(s)	350, 397, 590
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	1 cut(s)	207
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	1 cut(s)	359
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	5 cut(s)	288, 389, 417, 492, 584
TspGWI	ACGGA	1 cut(s)	503
TspRI	CASTG	1 cut(s)	207
VspI	ATTAAT	1 cut(s)	462
XagI	CCTNNNNNAGG	2 cut(s)	171, 390
XapI	RAATTY	1 cut(s)	278
XbaI	TCTAGA	1 cut(s)	307
XceI	RCATGY	1 cut(s)	221
XspI	CTAG	4 cut(s)	18, 296, 308, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.