Rw4G036830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0008132
Physical Location & Seq
Forward (+)
63643643 .. 63645844
2202 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G036830.1

Sequence Viewer

Length: 1251 bp
ATGTTTGGAGTTACTGCTAGTGATGGAAGTAGGAGACGTTTACCGCAATGGATGCTGGGCGGGTCATCTACTGGCCAAGAGGGGAAGTCCAGCAATGTTGAAGAAAAGGGCAACCAGCTTGAGGAAGGACTTGCTTCTCAAGAGGCAGAAACTGTGACTGCAAAACCTGGTAAAGGGATCTGGCGTCGTGAAAAGGAAACACTGGGAGAAGGCTTGCATGTTCTTCAAAAGTGTGAGGCAAAGAAAAGAAAGAGAAAATCAACTCAACAAGATGAAGAATTTGAAGGTAATGACCCAGTAGCTGTTCTAGAGAAGAAGTGTAGTGGGCGTGGGAGAAGAAAAGTTCAGGAATCTATTGCTGCAGATAGGCAAAAAGCAAAGGCTCCTGGAAAAGGGATTCATGAAAAGAAAACGTTGGGAGAGAACTCATACATTCTTGCAAAATGTGAGACAAAAAGGATTAATAGTAAAACAAATGAACAAGATACGGATTTTGATGGCAACGCCCCTGCAAGTTTTCCAGAGAAGATTGGACGTGGGAGAAGAAAAGTTCAAGAAACAGCTGTCATGAAGAGACATGAAGCAAAGGATTCTAGCTGTGGAAGTGGTGAGGAACGAGAAGTCCAGACTTCAAGTGATGATGATGTTGAACTGACAGCAGAAGATTTAGTGATGATTGCTGAAGAGGTTAGTTGCTCTTTCCTTGGCACTAAAGGAAAACTGAAGAATATTACTTCACTACTAATGACTGCTTTTGATAGTACAAAGTTTCTATCTTGTACATGGAATCTAAGGTTTGCTACCACCGTTGTGCAGTACATAAAAGCTGATAGGAAATTAGTTCCAGAAAAAGCATCAAATCAAGAATGTGAATCAGGCAGCAGACTTGCACTAAGAGTCGCTTCCAGTGGTAAGTCAGATGATTCTATGGACTCCCAAAACTGTAACGCAAGATCACTCATCCAAGATGCTACCAGTTCTAAGCCTAACGGGAGCTCGACTAGTGAAGAAATTGCCTTGAACTCCAGTAGAACAGGGGATCCTGCTCAGGACATGCTGGATCTGTTTTTAGGCCCCTGGCTGAAGAAACCTGTCGAGAAGGAAGCGAGGACTGACATTTTGACAGACGATCTGGCATTTTCCTACAGAGTCGAATCACAAACTCATAGTAATGTTGTTAAAGAAGAAATTGCCCCCATAACGAAGAAGAAGACCAGTCTGAAAGACAAGGTGGCAATGTTTCTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

416

Amino Acids

45.81

Weight (kDa)

7.99

Isoelectric Point (pI)

48.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 44, 60
AclI AACGTT 1 cut(s) 413
AclWI GGATC 4 cut(s) 185, 1034, 1047, 1068
AcoI YGGCCR 1 cut(s) 73
AcsI RAATTY 1 cut(s) 278
AcuI CTGAAG 3 cut(s) 702, 743, 1103
AcyI GRCGYC 1 cut(s) 184
AfaI GTAC 3 cut(s) 763, 781, 818
AfiI CCNNNNNNNGG 3 cut(s) 121, 173, 392
AgsI TTSAA 7 cut(s) 101, 227, 284, 554, 633, 650, 1021
AhlI ACTAGT 1 cut(s) 1001
AjiI CACGTC 1 cut(s) 536
AjnI CCWGG 3 cut(s) 166, 385, 1076
AleI CACNNNNGTG 1 cut(s) 809
AloI GAACNNNNNNTCC 4 cut(s) 606, 638, 1024, 1056
AluBI AGCT 6 cut(s) 118, 302, 563, 597, 827, 996
AluI AGCT 6 cut(s) 118, 302, 563, 597, 827, 996
Alw21I GWGCWC 1 cut(s) 998
Alw26I GTCTC 3 cut(s) 28, 443, 568
AlwI GGATC 4 cut(s) 185, 1034, 1047, 1068
AlwNI CAGNNNCTG 2 cut(s) 152, 302
AoxI GGCC 2 cut(s) 73, 1072
ApeKI GCWGC 2 cut(s) 359, 879
ApoI RAATTY 1 cut(s) 278
ArsI GACNNNNNNTTYG 2 cut(s) 1102, 1134
AseI ATTAAT 1 cut(s) 462
AspS9I GGNCC 1 cut(s) 1073
AsuHPI GGTGA 1 cut(s) 620
BalI TGGCCA 1 cut(s) 75
BamHI GGATCC 1 cut(s) 1039
BanII GRGCYC 1 cut(s) 998
BbsI GAAGAC 1 cut(s) 1217
Bbv12I GWGCWC 1 cut(s) 998
BbvI GCAGC 2 cut(s) 346, 891
BccI CCATC 2 cut(s) 17, 491
BciT130I CCWGG 3 cut(s) 168, 387, 1078
BcoDI GTCTC 3 cut(s) 28, 443, 568
BcuI ACTAGT 1 cut(s) 1001
BfaI CTAG 4 cut(s) 18, 308, 594, 1002
BfmI CTRYAG 2 cut(s) 360, 1144
BisI GCNGC 2 cut(s) 360, 880
BlsI GCNGC 2 cut(s) 361, 881
Bme1390I CCNGG 3 cut(s) 168, 387, 1078
BmgBI CACGTC 1 cut(s) 536
BmgT120I GGNCC 1 cut(s) 1073
BmiI GGNNCC 3 cut(s) 384, 1041, 1075
BmrFI CCNGG 3 cut(s) 168, 387, 1078
BmrI ACTGGG 2 cut(s) 212, 290
BmsI GCATC 3 cut(s) 42, 863, 958
BmuI ACTGGG 2 cut(s) 212, 290
BpiI GAAGAC 1 cut(s) 1217
BpmI CTGGAG 1 cut(s) 1009
Bpu10I CCTNAGC 1 cut(s) 1047
BpuEI CTTGAG 2 cut(s) 123, 140
BsaHI GRCGYC 1 cut(s) 184
BsaJI CCNNGG 2 cut(s) 703, 1076
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 173, 392
Bse1I ACTGG 7 cut(s) 76, 207, 296, 906, 975, 1026, 1215
Bse3DI GCAATG 3 cut(s) 53, 100, 1242
BseBI CCWGG 3 cut(s) 168, 387, 1078
BseDI CCNNGG 2 cut(s) 703, 1076
BseGI GGATG 2 cut(s) 57, 960
BseLI CCNNNNNNNGG 3 cut(s) 121, 173, 392
BseMI GCAATG 3 cut(s) 53, 100, 1242
BseMII CTCAG 1 cut(s) 1061
BseNI ACTGG 7 cut(s) 76, 207, 296, 906, 975, 1026, 1215
BseXI GCAGC 2 cut(s) 346, 891
BseYI CCCAGC 1 cut(s) 55
BsgI GTGCAG 1 cut(s) 833
BshFI GGCC 2 cut(s) 75, 1074
BsiHKAI GWGCWC 1 cut(s) 998
BslI CCNNNNNNNGG 3 cut(s) 121, 173, 392
BsmAI GTCTC 3 cut(s) 28, 443, 568
BsmBI CGTCTC 1 cut(s) 28
BsnI GGCC 2 cut(s) 75, 1074
Bsp1286I GDGCHC 1 cut(s) 998
Bsp1407I TGTACA 1 cut(s) 779
Bsp143I GATC 5 cut(s) 177, 953, 1039, 1060, 1129
BspACI CCGC 2 cut(s) 44, 60
BspANI GGCC 2 cut(s) 75, 1074
BspCNI CTCAG 1 cut(s) 1060
BspHI TCATGA 2 cut(s) 400, 567
BspLI GGNNCC 3 cut(s) 384, 1041, 1075
BspMAI CTGCAG 1 cut(s) 364
BspPI GGATC 4 cut(s) 185, 1034, 1047, 1068
BsrDI GCAATG 3 cut(s) 53, 100, 1242
BsrGI TGTACA 1 cut(s) 779
BsrI ACTGG 7 cut(s) 76, 207, 296, 906, 975, 1026, 1215
BssECI CCNNGG 2 cut(s) 703, 1076
BssMI GATC 5 cut(s) 177, 953, 1039, 1060, 1129
BssNI GRCGYC 1 cut(s) 184
BssT1I CCWWGG 1 cut(s) 703
Bst2UI CCWGG 3 cut(s) 168, 387, 1078
Bst4CI ACNGT 3 cut(s) 154, 808, 944
Bst6I CTCTTC 2 cut(s) 566, 678
BstACI GRCGYC 1 cut(s) 184
BstAPI GCANNNNNTGC 1 cut(s) 52
BstAUI TGTACA 1 cut(s) 779
BstC8I GCNNGC 1 cut(s) 215
BstDEI CTNAG 4 cut(s) 791, 893, 981, 1047
BstENI CCTNNNNNAGG 2 cut(s) 171, 390
BstF5I GGATG 2 cut(s) 57, 960
BstKTI GATC 5 cut(s) 180, 956, 1042, 1063, 1132
BstMAI GTCTC 3 cut(s) 28, 443, 568
BstMBI GATC 5 cut(s) 177, 953, 1039, 1060, 1129
BstMWI GCNNNNNNNGC 1 cut(s) 52
BstNI CCWGG 3 cut(s) 168, 387, 1078
BstNSI RCATGY 2 cut(s) 221, 1057
BstSCI CCNGG 3 cut(s) 166, 385, 1076
BstSFI CTRYAG 2 cut(s) 360, 1144
BstV1I GCAGC 2 cut(s) 346, 891
BstV2I GAAGAC 1 cut(s) 1217
BstX2I RGATCY 3 cut(s) 177, 1039, 1060
BstYI RGATCY 3 cut(s) 177, 1039, 1060
BsuRI GGCC 2 cut(s) 75, 1074
BtrI CACGTC 1 cut(s) 536
BtsCI GGATG 2 cut(s) 57, 960
BtsIMutI CAGTG 2 cut(s) 200, 913
Cac8I GCNNGC 1 cut(s) 215
CaiI CAGNNNCTG 2 cut(s) 152, 302
CciI TCATGA 2 cut(s) 400, 567
Cfr13I GGNCC 1 cut(s) 1073
CseI GACGC 1 cut(s) 173
CsiI ACCWGGT 1 cut(s) 166
Csp6I GTAC 3 cut(s) 762, 780, 817
CviAII CATG 6 cut(s) 218, 401, 568, 578, 783, 1054
CviQI GTAC 3 cut(s) 762, 780, 817
DdeI CTNAG 4 cut(s) 791, 893, 981, 1047
DpnI GATC 5 cut(s) 179, 955, 1041, 1062, 1131
DpnII GATC 5 cut(s) 177, 953, 1039, 1060, 1129
EaeI YGGCCR 1 cut(s) 73
Eam1104I CTCTTC 2 cut(s) 566, 678
EarI CTCTTC 2 cut(s) 566, 678
Ecl136II GAGCTC 1 cut(s) 996
Eco130I CCWWGG 1 cut(s) 703
Eco24I GRGCYC 1 cut(s) 998
Eco53kI GAGCTC 1 cut(s) 996
Eco57I CTGAAG 3 cut(s) 702, 743, 1103
EcoICRI GAGCTC 1 cut(s) 996
EcoNI CCTNNNNNAGG 2 cut(s) 171, 390
EcoO109I RGGNCCY 1 cut(s) 1073
EcoRII CCWGG 3 cut(s) 166, 385, 1076
EcoT14I CCWWGG 1 cut(s) 703
EcoT38I GRGCYC 1 cut(s) 998
ErhI CCWWGG 1 cut(s) 703
Esp3I CGTCTC 1 cut(s) 28
FaeI CATG 6 cut(s) 221, 404, 571, 581, 786, 1057
FalI AAGNNNNNCTT 2 cut(s) 886, 918
FatI CATG 6 cut(s) 217, 400, 567, 577, 782, 1053
FauI CCCGC 1 cut(s) 53
Fnu4HI GCNGC 2 cut(s) 360, 880
FokI GGATG 2 cut(s) 64, 947
FriOI GRGCYC 1 cut(s) 998
Fsp4HI GCNGC 2 cut(s) 360, 880
FspBI CTAG 4 cut(s) 18, 308, 594, 1002
GluI GCNGC 2 cut(s) 360, 880
GsaI CCCAGC 1 cut(s) 59
GsuI CTGGAG 1 cut(s) 1009
HaeIII GGCC 2 cut(s) 75, 1074
HgaI GACGC 1 cut(s) 173
Hin1I GRCGYC 1 cut(s) 184
Hin1II CATG 6 cut(s) 221, 404, 571, 581, 786, 1057
HphI GGTGA 1 cut(s) 620
Hpy166II GTNNAC 1 cut(s) 41
Hpy188I TCNGA 2 cut(s) 919, 1221
Hpy8I GTNNAC 1 cut(s) 41
Hpy99I CGWCG 1 cut(s) 189
HpyAV CCTTC 4 cut(s) 119, 203, 278, 1093
HpyCH4III ACNGT 3 cut(s) 154, 808, 944
HpyCH4IV ACGT 3 cut(s) 37, 413, 535
HpyCH4V TGCA 7 cut(s) 161, 217, 362, 440, 512, 814, 890
HpyF10VI GCNNNNNNNGC 1 cut(s) 52
HpyF3I CTNAG 4 cut(s) 791, 893, 981, 1047
HpySE526I ACGT 3 cut(s) 37, 413, 535
Hsp92I GRCGYC 1 cut(s) 184
Hsp92II CATG 6 cut(s) 221, 404, 571, 581, 786, 1057
Kzo9I GATC 5 cut(s) 177, 953, 1039, 1060, 1129
LmnI GCTCC 2 cut(s) 388, 993
Lsp1109I GCAGC 2 cut(s) 346, 891
LweI GCATC 3 cut(s) 42, 863, 958
MabI ACCWGGT 1 cut(s) 166
MaeI CTAG 4 cut(s) 18, 308, 594, 1002
MaeII ACGT 3 cut(s) 37, 413, 535
MaeIII GTNAC 3 cut(s) 10, 154, 944
MalI GATC 5 cut(s) 179, 955, 1041, 1062, 1131
MboI GATC 5 cut(s) 177, 953, 1039, 1060, 1129
MflI RGATCY 3 cut(s) 177, 1039, 1060
MhlI GDGCHC 1 cut(s) 998
MlsI TGGCCA 1 cut(s) 75
MluCI AATT 4 cut(s) 278, 836, 1011, 1188
MluNI TGGCCA 1 cut(s) 75
MlyI GAGTC 3 cut(s) 906, 926, 1158
MnlI CCTC 7 cut(s) 73, 115, 136, 229, 604, 679, 1101
Mox20I TGGCCA 1 cut(s) 75
MscI TGGCCA 1 cut(s) 75
MseI TTAA 2 cut(s) 462, 1179
MslI CAYNNNNRTG 2 cut(s) 809, 1170
Msp20I TGGCCA 1 cut(s) 75
MspA1I CMGCKG 1 cut(s) 563
MspR9I CCNGG 3 cut(s) 168, 387, 1078
MvaI CCWGG 3 cut(s) 168, 387, 1078
MwoI GCNNNNNNNGC 1 cut(s) 52
NdeII GATC 5 cut(s) 177, 953, 1039, 1060, 1129
NlaIII CATG 6 cut(s) 221, 404, 571, 581, 786, 1057
NlaIV GGNNCC 3 cut(s) 384, 1041, 1075
NmuCI GTSAC 1 cut(s) 154
NspI RCATGY 2 cut(s) 221, 1057
OliI CACNNNNGTG 1 cut(s) 809
PagI TCATGA 2 cut(s) 400, 567
PfeI GAWTC 7 cut(s) 350, 397, 590, 787, 872, 923, 1154
PfoI TCCNGGA 1 cut(s) 385
PkrI GCNGC 2 cut(s) 361, 881
PleI GAGTC 3 cut(s) 905, 926, 1157
PpsI GAGTC 3 cut(s) 905, 926, 1157
PshBI ATTAAT 1 cut(s) 462
Psp124BI GAGCTC 1 cut(s) 998
Psp1406I AACGTT 1 cut(s) 413
Psp6I CCWGG 3 cut(s) 166, 385, 1076
PspFI CCCAGC 1 cut(s) 55
PspGI CCWGG 3 cut(s) 166, 385, 1076
PspN4I GGNNCC 3 cut(s) 384, 1041, 1075
PspPI GGNCC 1 cut(s) 1073
PstI CTGCAG 1 cut(s) 364
PstNI CAGNNNCTG 2 cut(s) 152, 302
PsuI RGATCY 3 cut(s) 177, 1039, 1060
PvuII CAGCTG 1 cut(s) 563
RsaI GTAC 3 cut(s) 763, 781, 818
RsaNI GTAC 3 cut(s) 762, 780, 817
RseI CAYNNNNRTG 2 cut(s) 809, 1170
SacI GAGCTC 1 cut(s) 998
SaqAI TTAA 2 cut(s) 462, 1179
SatI GCNGC 2 cut(s) 360, 880
Sau3AI GATC 5 cut(s) 177, 953, 1039, 1060, 1129
Sau96I GGNCC 1 cut(s) 1073
SchI GAGTC 3 cut(s) 906, 926, 1158
ScrFI CCNGG 3 cut(s) 168, 387, 1078
SduI GDGCHC 1 cut(s) 998
SexAI ACCWGGT 1 cut(s) 166
SfaNI GCATC 3 cut(s) 42, 863, 958
SfcI CTRYAG 2 cut(s) 360, 1144
SmiMI CAYNNNNRTG 2 cut(s) 809, 1170
SmlI CTYRAG 2 cut(s) 119, 138
SmoI CTYRAG 2 cut(s) 119, 138
SpeI ACTAGT 1 cut(s) 1001
Sse9I AATT 4 cut(s) 278, 836, 1011, 1188
SsiI CCGC 2 cut(s) 44, 60
SspI AATATT 1 cut(s) 730
SspMI CTAG 4 cut(s) 18, 308, 594, 1002
SstI GAGCTC 1 cut(s) 998
StyD4I CCNGG 3 cut(s) 166, 385, 1076
StyI CCWWGG 1 cut(s) 703
TaaI ACNGT 3 cut(s) 154, 808, 944
TaiI ACGT 3 cut(s) 40, 416, 538
TaqI TCGA 3 cut(s) 998, 1095, 1152
TasI AATT 4 cut(s) 278, 836, 1011, 1188
TatI WGTACW 3 cut(s) 761, 779, 816
TfiI GAWTC 7 cut(s) 350, 397, 590, 787, 872, 923, 1154
Tru1I TTAA 2 cut(s) 462, 1179
Tru9I TTAA 2 cut(s) 462, 1179
TscAI CASTG 2 cut(s) 207, 913
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 2 cut(s) 359, 879
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 6 cut(s) 288, 389, 417, 492, 584, 594
TspGWI ACGGA 1 cut(s) 503
TspRI CASTG 2 cut(s) 207, 913
VspI ATTAAT 1 cut(s) 462
XagI CCTNNNNNAGG 2 cut(s) 171, 390
XapI RAATTY 1 cut(s) 278
XbaI TCTAGA 1 cut(s) 307
XceI RCATGY 2 cut(s) 221, 1057
XspI CTAG 4 cut(s) 18, 308, 594, 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.