Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0008132

Physical Location & Seq

Genomic Coordinates Forward (+)

65486834 .. 65490186

Gene Structure 3353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00386660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGTTTGGAGTTACTGCTAGTGATGGAAGTAGGAGACGTTTACCGCAATGGATGCTGGGCGGGTCATCTACTGGCCAAGAGGGGAAGTCCAGCAATGTTGAAGAAAAGGGCAACCAGCTTGAGGAAGGACTTACTTCTCAAGAGGCAGAAACTGTGACTGCAAAACCTGGTAAAGGGATCCGGCGTCGTGAAAAGGAAACACTGGGAGAAGGCTTGCATGTTCTTCAAAAGTGTGAGGCAAAGAAAAGAAAGAGAAAATCGACTCAACAAGATGAAGAATTTGAAGGTAATGACCCAGGAGCTGTTCTAGAGAAGAAGTGTAGTGGGCGTGGGAGAAGAAAAGTTCAGGAATCTATTGCCGGGGAAAGGCAAAAAGCAAAGGCTCCTGGAAAAGGGATTCATGAAAAGAAAACGTTGGGAGAGAACTCATACATTCTTGCAAAATGTGAGACAAAAAGGATTAATAGTAAAACAAATGAACAAGATACGGATTTTGATGGCAATGCCCCTGCAAGTTTTCCAGAGAAGATTGGACGTGGGAGAAGAAAAGTTCAAGAAACAGCTGTCCTGAAGAGACAAGAAGCAAAGGATTCTAGATGTGGAAGTGGTGAGGAACGAGAAGTCCAGATTTCGAGTGATGATGATGTCGAACTGACAGCAGAAGATTTAGTGATGATTGCTGAAGAGGTTAGTTGCTCTTTCCTTGGCACTAAAGGAAAACTGAAGAATATTACTTCACTACTAATGACTGCTTTTGATAGTACTAAGTTTCTATCTTGTACATGGAATCTAAGGTTTGCTACCACCGCTGTGCAGTACATAAAAACTGATAGGAAATTAGTGCCAGAAAAAGCATCAAATGAAGAATGTGAATCAGGCAGCAGACTTGCACTAAGAGTCGCTTCCAGTAGTAAGTCAGATGATTCTATGGACTCCCAAAACTGTAACGCAAGATCACTCATCCAAGATGCTACCAGTTCTAAGCCTAATGGGAGCTCGACTAGTGAAGAAATTGCCTTGAACTCCAGTAGAACAGGGGATCCTGCTCAGGACATGCTGGATCTGTTTTTAGGCCCCTGGCTGAAGAAACCTGTCGAGAAGGAAGCGAGGACTGACATTTTGACAGATGATCTGGCATTTTCCTACAAAGTCGAATCACAAACTCATAGTAATGTTGTTAAAGAAGAAATTGCCCCCATAACGAAGAAGAAGACCAGTCTGAAAGACAAGGTGGCAATGTTTCTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

416

Amino Acids

45.83

Weight (kDa)

8.26

Isoelectric Point (pI)

50.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008132)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36500 FvH4_4g36500
malus_domestica	MD13G1008600.v1.1
prunus_persica	Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1
pyrus_communis	pycom13g00720
rosa_chinensis	RchiOBHm_Chr4g0446261
rosa_laevigata	RLG00000005676
rosa_multiflora	Rmu_co8265537.1_g000001 Rmu_sc0022410.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386660
rosa_rugosa	Rorug04G0369100 Rorug04G0369200 Rorug04G0369300
rosa_samantha	Rh4AG431100 Rh4BG440500 Rh4CG457800 Rh4DG439000
rosa_wichuraiana	Rw4G036830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	44, 60, 807
AclI	AACGTT	1 cut(s)	413
AclWI	GGATC	5 cut(s)	172, 185, 1034, 1047, 1068
AcoI	YGGCCR	1 cut(s)	73
AcsI	RAATTY	1 cut(s)	278
AcuI	CTGAAG	4 cut(s)	590, 702, 743, 1103
AcyI	GRCGYC	1 cut(s)	184
AfaI	GTAC	3 cut(s)	763, 781, 818
AfiI	CCNNNNNNNGG	4 cut(s)	121, 173, 366, 392
AgsI	TTSAA	5 cut(s)	101, 227, 284, 554, 1021
AhlI	ACTAGT	1 cut(s)	1001
AjiI	CACGTC	1 cut(s)	536
AjnI	CCWGG	4 cut(s)	166, 295, 385, 1076
AleI	CACNNNNGTG	1 cut(s)	809
AloI	GAACNNNNNNTCC	4 cut(s)	606, 638, 1024, 1056
AluBI	AGCT	4 cut(s)	118, 302, 563, 996
AluI	AGCT	4 cut(s)	118, 302, 563, 996
Alw21I	GWGCWC	1 cut(s)	998
Alw26I	GTCTC	3 cut(s)	28, 443, 568
AlwI	GGATC	5 cut(s)	172, 185, 1034, 1047, 1068
AlwNI	CAGNNNCTG	2 cut(s)	152, 302
AoxI	GGCC	2 cut(s)	73, 1072
ApeKI	GCWGC	1 cut(s)	879
ApoI	RAATTY	1 cut(s)	278
ArsI	GACNNNNNNTTYG	2 cut(s)	1102, 1134
AseI	ATTAAT	1 cut(s)	462
AspS9I	GGNCC	1 cut(s)	1073
AsuC2I	CCSGG	1 cut(s)	361
AsuHPI	GGTGA	1 cut(s)	620
BalI	TGGCCA	1 cut(s)	75
BamHI	GGATCC	2 cut(s)	177, 1039
BanII	GRGCYC	1 cut(s)	998
BbsI	GAAGAC	1 cut(s)	1217
Bbv12I	GWGCWC	1 cut(s)	998
BbvI	GCAGC	1 cut(s)	891
BccI	CCATC	2 cut(s)	17, 491
BciT130I	CCWGG	4 cut(s)	168, 297, 387, 1078
BcnI	CCSGG	1 cut(s)	361
BcoDI	GTCTC	3 cut(s)	28, 443, 568
BcuI	ACTAGT	1 cut(s)	1001
BfaI	CTAG	4 cut(s)	18, 308, 594, 1002
BisI	GCNGC	1 cut(s)	880
BlsI	GCNGC	1 cut(s)	881
BmcAI	AGTACT	1 cut(s)	763
Bme1390I	CCNGG	5 cut(s)	168, 297, 361, 387, 1078
BmgBI	CACGTC	1 cut(s)	536
BmgT120I	GGNCC	1 cut(s)	1073
BmiI	GGNNCC	4 cut(s)	179, 384, 1041, 1075
BmrFI	CCNGG	5 cut(s)	168, 297, 361, 387, 1078
BmrI	ACTGGG	1 cut(s)	212
BmsI	GCATC	3 cut(s)	42, 863, 958
BmuI	ACTGGG	1 cut(s)	212
BpiI	GAAGAC	1 cut(s)	1217
BpmI	CTGGAG	1 cut(s)	1009
Bpu10I	CCTNAGC	1 cut(s)	1047
BpuEI	CTTGAG	2 cut(s)	123, 140
BpuMI	CCSGG	1 cut(s)	361
BsaHI	GRCGYC	1 cut(s)	184
BsaJI	CCNNGG	4 cut(s)	295, 360, 703, 1076
Bsc4I	CCNNNNNNNGG	4 cut(s)	121, 173, 366, 392
Bse1I	ACTGG	6 cut(s)	76, 207, 906, 975, 1026, 1215
Bse3DI	GCAATG	4 cut(s)	53, 100, 508, 1242
BseBI	CCWGG	4 cut(s)	168, 297, 387, 1078
BseDI	CCNNGG	4 cut(s)	295, 360, 703, 1076
BseGI	GGATG	2 cut(s)	57, 960
BseLI	CCNNNNNNNGG	4 cut(s)	121, 173, 366, 392
BseMI	GCAATG	4 cut(s)	53, 100, 508, 1242
BseMII	CTCAG	1 cut(s)	1061
BseNI	ACTGG	6 cut(s)	76, 207, 906, 975, 1026, 1215
BseXI	GCAGC	1 cut(s)	891
BseYI	CCCAGC	1 cut(s)	55
BsgI	GTGCAG	1 cut(s)	833
BshFI	GGCC	2 cut(s)	75, 1074
BsiHKAI	GWGCWC	1 cut(s)	998
BsiSI	CCGG	2 cut(s)	181, 360
BslI	CCNNNNNNNGG	4 cut(s)	121, 173, 366, 392
BsmAI	GTCTC	3 cut(s)	28, 443, 568
BsmBI	CGTCTC	1 cut(s)	28
BsnI	GGCC	2 cut(s)	75, 1074
Bsp1286I	GDGCHC	1 cut(s)	998
Bsp1407I	TGTACA	1 cut(s)	779
Bsp143I	GATC	5 cut(s)	177, 953, 1039, 1060, 1129
BspACI	CCGC	3 cut(s)	44, 60, 807
BspANI	GGCC	2 cut(s)	75, 1074
BspCNI	CTCAG	1 cut(s)	1060
BspHI	TCATGA	1 cut(s)	400
BspLI	GGNNCC	4 cut(s)	179, 384, 1041, 1075
BspPI	GGATC	5 cut(s)	172, 185, 1034, 1047, 1068
BsrDI	GCAATG	4 cut(s)	53, 100, 508, 1242
BsrGI	TGTACA	1 cut(s)	779
BsrI	ACTGG	6 cut(s)	76, 207, 906, 975, 1026, 1215
BssECI	CCNNGG	4 cut(s)	295, 360, 703, 1076
BssMI	GATC	5 cut(s)	177, 953, 1039, 1060, 1129
BssNI	GRCGYC	1 cut(s)	184
BssT1I	CCWWGG	1 cut(s)	703
Bst2UI	CCWGG	4 cut(s)	168, 297, 387, 1078
Bst4CI	ACNGT	2 cut(s)	154, 944
Bst6I	CTCTTC	2 cut(s)	566, 678
BstACI	GRCGYC	1 cut(s)	184
BstAPI	GCANNNNNTGC	1 cut(s)	52
BstAUI	TGTACA	1 cut(s)	779
BstC8I	GCNNGC	1 cut(s)	215
BstDEI	CTNAG	5 cut(s)	765, 791, 893, 981, 1047
BstENI	CCTNNNNNAGG	2 cut(s)	171, 390
BstF5I	GGATG	2 cut(s)	57, 960
BstKTI	GATC	5 cut(s)	180, 956, 1042, 1063, 1132
BstMAI	GTCTC	3 cut(s)	28, 443, 568
BstMBI	GATC	5 cut(s)	177, 953, 1039, 1060, 1129
BstMWI	GCNNNNNNNGC	2 cut(s)	52, 806
BstNI	CCWGG	4 cut(s)	168, 297, 387, 1078
BstNSI	RCATGY	2 cut(s)	221, 1057
BstSCI	CCNGG	5 cut(s)	166, 295, 359, 385, 1076
BstV1I	GCAGC	1 cut(s)	891
BstV2I	GAAGAC	1 cut(s)	1217
BstX2I	RGATCY	3 cut(s)	177, 1039, 1060
BstYI	RGATCY	3 cut(s)	177, 1039, 1060
BsuRI	GGCC	2 cut(s)	75, 1074
BtrI	CACGTC	1 cut(s)	536
BtsCI	GGATG	2 cut(s)	57, 960
BtsIMutI	CAGTG	1 cut(s)	200
Cac8I	GCNNGC	1 cut(s)	215
CaiI	CAGNNNCTG	2 cut(s)	152, 302
CciI	TCATGA	1 cut(s)	400
Cfr13I	GGNCC	1 cut(s)	1073
CseI	GACGC	1 cut(s)	173
CsiI	ACCWGGT	1 cut(s)	166
Csp6I	GTAC	3 cut(s)	762, 780, 817
CviAII	CATG	4 cut(s)	218, 401, 783, 1054
CviQI	GTAC	3 cut(s)	762, 780, 817
DdeI	CTNAG	5 cut(s)	765, 791, 893, 981, 1047
DpnI	GATC	5 cut(s)	179, 955, 1041, 1062, 1131
DpnII	GATC	5 cut(s)	177, 953, 1039, 1060, 1129
EaeI	YGGCCR	1 cut(s)	73
Eam1104I	CTCTTC	2 cut(s)	566, 678
EarI	CTCTTC	2 cut(s)	566, 678
Ecl136II	GAGCTC	1 cut(s)	996
Eco130I	CCWWGG	1 cut(s)	703
Eco24I	GRGCYC	1 cut(s)	998
Eco53kI	GAGCTC	1 cut(s)	996
Eco57I	CTGAAG	4 cut(s)	590, 702, 743, 1103
EcoICRI	GAGCTC	1 cut(s)	996
EcoNI	CCTNNNNNAGG	2 cut(s)	171, 390
EcoO109I	RGGNCCY	1 cut(s)	1073
EcoRII	CCWGG	4 cut(s)	166, 295, 385, 1076
EcoT14I	CCWWGG	1 cut(s)	703
EcoT38I	GRGCYC	1 cut(s)	998
ErhI	CCWWGG	1 cut(s)	703
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	4 cut(s)	221, 404, 786, 1057
FaiI	YATR	9 cut(s)	219, 402, 430, 784, 821, 929, 1055, 1167, 1199
FalI	AAGNNNNNCTT	2 cut(s)	886, 918
FatI	CATG	4 cut(s)	217, 400, 782, 1053
FauI	CCCGC	1 cut(s)	53
Fnu4HI	GCNGC	1 cut(s)	880
FokI	GGATG	2 cut(s)	64, 947
FriOI	GRGCYC	1 cut(s)	998
Fsp4HI	GCNGC	1 cut(s)	880
FspBI	CTAG	4 cut(s)	18, 308, 594, 1002
GluI	GCNGC	1 cut(s)	880
GsaI	CCCAGC	1 cut(s)	59
GsuI	CTGGAG	1 cut(s)	1009
HaeIII	GGCC	2 cut(s)	75, 1074
HapII	CCGG	2 cut(s)	181, 360
HgaI	GACGC	1 cut(s)	173
Hin1I	GRCGYC	1 cut(s)	184
Hin1II	CATG	4 cut(s)	221, 404, 786, 1057
HpaII	CCGG	2 cut(s)	181, 360
HphI	GGTGA	1 cut(s)	620
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188I	TCNGA	2 cut(s)	919, 1221
Hpy8I	GTNNAC	1 cut(s)	41
Hpy99I	CGWCG	1 cut(s)	189
HpyAV	CCTTC	4 cut(s)	119, 203, 278, 1093
HpyCH4III	ACNGT	2 cut(s)	154, 944
HpyCH4IV	ACGT	3 cut(s)	37, 413, 535
HpyCH4V	TGCA	6 cut(s)	161, 217, 440, 512, 814, 890
HpyF10VI	GCNNNNNNNGC	2 cut(s)	52, 806
HpyF3I	CTNAG	5 cut(s)	765, 791, 893, 981, 1047
HpySE526I	ACGT	3 cut(s)	37, 413, 535
Hsp92I	GRCGYC	1 cut(s)	184
Hsp92II	CATG	4 cut(s)	221, 404, 786, 1057
Kzo9I	GATC	5 cut(s)	177, 953, 1039, 1060, 1129
LmnI	GCTCC	3 cut(s)	299, 388, 993
Lsp1109I	GCAGC	1 cut(s)	891
LweI	GCATC	3 cut(s)	42, 863, 958
MabI	ACCWGGT	1 cut(s)	166
MaeI	CTAG	4 cut(s)	18, 308, 594, 1002
MaeII	ACGT	3 cut(s)	37, 413, 535
MaeIII	GTNAC	3 cut(s)	10, 154, 944
MalI	GATC	5 cut(s)	179, 955, 1041, 1062, 1131
MboI	GATC	5 cut(s)	177, 953, 1039, 1060, 1129
MflI	RGATCY	3 cut(s)	177, 1039, 1060
MhlI	GDGCHC	1 cut(s)	998
MlsI	TGGCCA	1 cut(s)	75
MluCI	AATT	4 cut(s)	278, 836, 1011, 1188
MluNI	TGGCCA	1 cut(s)	75
MlyI	GAGTC	3 cut(s)	256, 906, 926
MnlI	CCTC	7 cut(s)	73, 115, 136, 229, 604, 679, 1101
Mox20I	TGGCCA	1 cut(s)	75
MscI	TGGCCA	1 cut(s)	75
MseI	TTAA	2 cut(s)	462, 1179
MslI	CAYNNNNRTG	2 cut(s)	809, 1170
Msp20I	TGGCCA	1 cut(s)	75
MspA1I	CMGCKG	2 cut(s)	563, 809
MspI	CCGG	2 cut(s)	181, 360
MspR9I	CCNGG	5 cut(s)	168, 297, 361, 387, 1078
MvaI	CCWGG	4 cut(s)	168, 297, 387, 1078
MwoI	GCNNNNNNNGC	2 cut(s)	52, 806
NciI	CCSGG	1 cut(s)	361
NdeII	GATC	5 cut(s)	177, 953, 1039, 1060, 1129
NlaIII	CATG	4 cut(s)	221, 404, 786, 1057
NlaIV	GGNNCC	4 cut(s)	179, 384, 1041, 1075
NmuCI	GTSAC	1 cut(s)	154
NspI	RCATGY	2 cut(s)	221, 1057
OliI	CACNNNNGTG	1 cut(s)	809
PagI	TCATGA	1 cut(s)	400
PfeI	GAWTC	7 cut(s)	350, 397, 590, 787, 872, 923, 1154
PfoI	TCCNGGA	1 cut(s)	385
PkrI	GCNGC	1 cut(s)	881
PleI	GAGTC	3 cut(s)	256, 905, 926
PpsI	GAGTC	3 cut(s)	256, 905, 926
PshBI	ATTAAT	1 cut(s)	462
Psp124BI	GAGCTC	1 cut(s)	998
Psp1406I	AACGTT	1 cut(s)	413
Psp6I	CCWGG	4 cut(s)	166, 295, 385, 1076
PspFI	CCCAGC	1 cut(s)	55
PspGI	CCWGG	4 cut(s)	166, 295, 385, 1076
PspN4I	GGNNCC	4 cut(s)	179, 384, 1041, 1075
PspPI	GGNCC	1 cut(s)	1073
PstNI	CAGNNNCTG	2 cut(s)	152, 302
PsuI	RGATCY	3 cut(s)	177, 1039, 1060
PvuII	CAGCTG	1 cut(s)	563
RsaI	GTAC	3 cut(s)	763, 781, 818
RsaNI	GTAC	3 cut(s)	762, 780, 817
RseI	CAYNNNNRTG	2 cut(s)	809, 1170
SacI	GAGCTC	1 cut(s)	998
SaqAI	TTAA	2 cut(s)	462, 1179
SatI	GCNGC	1 cut(s)	880
Sau3AI	GATC	5 cut(s)	177, 953, 1039, 1060, 1129
Sau96I	GGNCC	1 cut(s)	1073
ScaI	AGTACT	1 cut(s)	763
SchI	GAGTC	3 cut(s)	256, 906, 926
ScrFI	CCNGG	5 cut(s)	168, 297, 361, 387, 1078
SduI	GDGCHC	1 cut(s)	998
SexAI	ACCWGGT	1 cut(s)	166
SfaNI	GCATC	3 cut(s)	42, 863, 958
SmiMI	CAYNNNNRTG	2 cut(s)	809, 1170
SmlI	CTYRAG	2 cut(s)	119, 138
SmoI	CTYRAG	2 cut(s)	119, 138
SpeI	ACTAGT	1 cut(s)	1001
Sse9I	AATT	4 cut(s)	278, 836, 1011, 1188
SsiI	CCGC	3 cut(s)	44, 60, 807
SspI	AATATT	1 cut(s)	730
SspMI	CTAG	4 cut(s)	18, 308, 594, 1002
SstI	GAGCTC	1 cut(s)	998
StyD4I	CCNGG	5 cut(s)	166, 295, 359, 385, 1076
StyI	CCWWGG	1 cut(s)	703
TaaI	ACNGT	2 cut(s)	154, 944
TaiI	ACGT	3 cut(s)	40, 416, 538
TaqI	TCGA	6 cut(s)	260, 632, 648, 998, 1095, 1152
TasI	AATT	4 cut(s)	278, 836, 1011, 1188
TatI	WGTACW	3 cut(s)	761, 779, 816
TfiI	GAWTC	7 cut(s)	350, 397, 590, 787, 872, 923, 1154
Tru1I	TTAA	2 cut(s)	462, 1179
Tru9I	TTAA	2 cut(s)	462, 1179
TscAI	CASTG	1 cut(s)	207
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	1 cut(s)	879
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	5 cut(s)	288, 389, 417, 492, 876
TspGWI	ACGGA	1 cut(s)	503
TspRI	CASTG	1 cut(s)	207
VspI	ATTAAT	1 cut(s)	462
XagI	CCTNNNNNAGG	2 cut(s)	171, 390
XapI	RAATTY	1 cut(s)	278
XbaI	TCTAGA	2 cut(s)	307, 593
XceI	RCATGY	2 cut(s)	221, 1057
XspI	CTAG	4 cut(s)	18, 308, 594, 1002
ZrmI	AGTACT	1 cut(s)	763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.