Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008132

Physical Location & Seq

Genomic Coordinates Reverse (-)

765717 .. 767213

Gene Structure 1497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005676

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGTTTGGAGTTACTGCTAGTGATGGAAGTAGGAGACGTTTACCGCAATGGATGCTGGGCGGGTCATCTACTGGCCAAGAGGGGAAGTCCAACAATGTTGAAGAAAAGGGCAACCACCTTGAGGAAGGACTTGCTTCTCAAGAGGCAGAAACTGTGACTGCAAAACCTGGTAAAGGGATCCGGCGTCGTGAAAAGGAAACACTGGGAGAAGGCTTGCATGTTCTTCAAAAGTGCGAGGTAAAGAAAAGAAAGAGAAAATCGACTCAACAAGAGTTTGAAGGTAATGACCCAGAAGCTGTTCTAGAGAAGAAGTGTAGTGGGCGTGGGAGAAGAAAAGTTCAGGAATCTATTGCTGCAGATAGGCAAAAAGCAAAGGCTCCTGGAAAAGGGATTCATGAAAAGAAAACGTTGGGAGAGAACTCATACATTCTTGTAAAATGTGAGACAAAAAGGATTAATAGTAAAACAAATGAACAAGATACAGATTTTGATGGCAACGTCCCTGCAAGTTTTCCAGAGAAGATTGGACGTGGGAGAAGAAAAGTTCAAGAAACTGCTGTCCTGAAGAGACAAGCAGCAAAGGATTCTAGCTGTGGAAGTGGTGAGGAACGAGAAGTCCAGACGTTGAGTGATGATGATGTCGAACTGACAGCAGAAGATTTAGTGATGATTGCTGAAGAGTACATAAAAGCTGATAGGAAATTAGTGCCAGAAAAAGCATCAAATCAAGAATGTGAATCAGGCAGCAGACTTGCACTAAGAGTCGCTTCCAGTAGTAAGTCAGATGATTCTATGGACTCCCAAAACTGTAACGCAAGATCACTCATCCAAGATGCTACCAGTTCTAAGCCTAACGGGAGCTCGACTAGTGAAGAAATTGCCATGAACTCCAGTAGAACAGGGGATCCTGCTCAGGACATGCTGGATCTGTTTTTAGGCCCCTGGCTGAAGAAACCTGTCGAGAACGAAGCGAGGACTGACATTTTGACAGACGATCTGGCATTCTCCTACAAAGTCGAATCACAAACTCATAGTAATGTTGTTAAAGAAGAAATTGCCCCCATAACGAAGAAGAAGACCAGTCTGAAAGACAAGGTGGCAATGTTTCTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

372

Amino Acids

40.9

Weight (kDa)

6.94

Isoelectric Point (pI)

50.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008132)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36500 FvH4_4g36500
malus_domestica	MD13G1008600.v1.1
prunus_persica	Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1
pyrus_communis	pycom13g00720
rosa_chinensis	RchiOBHm_Chr4g0446261
rosa_laevigata	RLG00000005676
rosa_multiflora	Rmu_co8265537.1_g000001 Rmu_sc0022410.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386660
rosa_rugosa	Rorug04G0369100 Rorug04G0369200 Rorug04G0369300
rosa_samantha	Rh4AG431100 Rh4BG440500 Rh4CG457800 Rh4DG439000
rosa_wichuraiana	Rw4G036830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	44, 60
AclI	AACGTT	1 cut(s)	407
AclWI	GGATC	5 cut(s)	172, 185, 899, 912, 933
AcoI	YGGCCR	1 cut(s)	73
AcuI	CTGAAG	3 cut(s)	584, 696, 968
AcyI	GRCGYC	1 cut(s)	184
AfaI	GTAC	1 cut(s)	683
AfiI	CCNNNNNNNGG	3 cut(s)	121, 173, 386
AgsI	TTSAA	4 cut(s)	101, 227, 278, 548
AhlI	ACTAGT	1 cut(s)	866
AjiI	CACGTC	1 cut(s)	530
AjnI	CCWGG	3 cut(s)	166, 379, 941
AloI	GAACNNNNNNTCC	4 cut(s)	600, 632, 889, 921
AluBI	AGCT	4 cut(s)	296, 591, 692, 861
AluI	AGCT	4 cut(s)	296, 591, 692, 861
Alw21I	GWGCWC	1 cut(s)	863
Alw26I	GTCTC	3 cut(s)	28, 437, 562
AlwI	GGATC	5 cut(s)	172, 185, 899, 912, 933
AlwNI	CAGNNNCTG	2 cut(s)	152, 296
AoxI	GGCC	2 cut(s)	73, 937
ApeKI	GCWGC	3 cut(s)	353, 575, 744
ArsI	GACNNNNNNTTYG	2 cut(s)	967, 999
AseI	ATTAAT	1 cut(s)	456
Asp700I	GAANNNNTTC	1 cut(s)	297
AspS9I	GGNCC	1 cut(s)	938
AsuHPI	GGTGA	1 cut(s)	614
BalI	TGGCCA	1 cut(s)	75
BamHI	GGATCC	2 cut(s)	177, 904
BanII	GRGCYC	1 cut(s)	863
BbsI	GAAGAC	1 cut(s)	1082
Bbv12I	GWGCWC	1 cut(s)	863
BbvI	GCAGC	3 cut(s)	340, 587, 756
BccI	CCATC	2 cut(s)	17, 485
BciT130I	CCWGG	3 cut(s)	168, 381, 943
BcoDI	GTCTC	3 cut(s)	28, 437, 562
BcuI	ACTAGT	1 cut(s)	866
BfaI	CTAG	4 cut(s)	18, 302, 588, 867
BfmI	CTRYAG	1 cut(s)	354
BisI	GCNGC	3 cut(s)	354, 576, 745
BlsI	GCNGC	3 cut(s)	355, 577, 746
Bme1390I	CCNGG	3 cut(s)	168, 381, 943
BmgBI	CACGTC	1 cut(s)	530
BmgT120I	GGNCC	1 cut(s)	938
BmiI	GGNNCC	4 cut(s)	179, 378, 906, 940
BmrFI	CCNGG	3 cut(s)	168, 381, 943
BmrI	ACTGGG	1 cut(s)	212
BmsI	GCATC	3 cut(s)	42, 728, 823
BmuI	ACTGGG	1 cut(s)	212
BpiI	GAAGAC	1 cut(s)	1082
BpmI	CTGGAG	1 cut(s)	874
Bpu10I	CCTNAGC	1 cut(s)	912
BpuEI	CTTGAG	2 cut(s)	123, 140
BsaHI	GRCGYC	1 cut(s)	184
BsaJI	CCNNGG	1 cut(s)	941
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 173, 386
Bse1I	ACTGG	6 cut(s)	76, 207, 771, 840, 891, 1080
Bse3DI	GCAATG	2 cut(s)	53, 1107
BseBI	CCWGG	3 cut(s)	168, 381, 943
BseDI	CCNNGG	1 cut(s)	941
BseGI	GGATG	2 cut(s)	57, 825
BseLI	CCNNNNNNNGG	3 cut(s)	121, 173, 386
BseMI	GCAATG	2 cut(s)	53, 1107
BseMII	CTCAG	1 cut(s)	926
BseNI	ACTGG	6 cut(s)	76, 207, 771, 840, 891, 1080
BseXI	GCAGC	3 cut(s)	340, 587, 756
BseYI	CCCAGC	1 cut(s)	55
BshFI	GGCC	2 cut(s)	75, 939
BsiHKAI	GWGCWC	1 cut(s)	863
BsiSI	CCGG	1 cut(s)	181
BslFI	GGGAC	1 cut(s)	485
BslI	CCNNNNNNNGG	3 cut(s)	121, 173, 386
BsmAI	GTCTC	3 cut(s)	28, 437, 562
BsmBI	CGTCTC	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	485
BsmI	GAATGC	1 cut(s)	1001
BsnI	GGCC	2 cut(s)	75, 939
Bsp1286I	GDGCHC	1 cut(s)	863
Bsp143I	GATC	5 cut(s)	177, 818, 904, 925, 994
BspACI	CCGC	2 cut(s)	44, 60
BspANI	GGCC	2 cut(s)	75, 939
BspCNI	CTCAG	1 cut(s)	925
BspHI	TCATGA	1 cut(s)	394
BspLI	GGNNCC	4 cut(s)	179, 378, 906, 940
BspMAI	CTGCAG	1 cut(s)	358
BspPI	GGATC	5 cut(s)	172, 185, 899, 912, 933
BsrDI	GCAATG	2 cut(s)	53, 1107
BsrI	ACTGG	6 cut(s)	76, 207, 771, 840, 891, 1080
BssECI	CCNNGG	1 cut(s)	941
BssMI	GATC	5 cut(s)	177, 818, 904, 925, 994
BssNI	GRCGYC	1 cut(s)	184
Bst2UI	CCWGG	3 cut(s)	168, 381, 943
Bst4CI	ACNGT	2 cut(s)	154, 809
Bst6I	CTCTTC	2 cut(s)	560, 672
BstACI	GRCGYC	1 cut(s)	184
BstAPI	GCANNNNNTGC	1 cut(s)	52
BstC8I	GCNNGC	1 cut(s)	215
BstDEI	CTNAG	3 cut(s)	758, 846, 912
BstENI	CCTNNNNNAGG	2 cut(s)	171, 384
BstF5I	GGATG	2 cut(s)	57, 825
BstKTI	GATC	5 cut(s)	180, 821, 907, 928, 997
BstMAI	GTCTC	3 cut(s)	28, 437, 562
BstMBI	GATC	5 cut(s)	177, 818, 904, 925, 994
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstNI	CCWGG	3 cut(s)	168, 381, 943
BstNSI	RCATGY	2 cut(s)	221, 922
BstSCI	CCNGG	3 cut(s)	166, 379, 941
BstSFI	CTRYAG	1 cut(s)	354
BstV1I	GCAGC	3 cut(s)	340, 587, 756
BstV2I	GAAGAC	1 cut(s)	1082
BstX2I	RGATCY	3 cut(s)	177, 904, 925
BstYI	RGATCY	3 cut(s)	177, 904, 925
BsuRI	GGCC	2 cut(s)	75, 939
BtrI	CACGTC	1 cut(s)	530
BtsCI	GGATG	2 cut(s)	57, 825
BtsIMutI	CAGTG	1 cut(s)	200
Cac8I	GCNNGC	1 cut(s)	215
CaiI	CAGNNNCTG	2 cut(s)	152, 296
CciI	TCATGA	1 cut(s)	394
Cfr13I	GGNCC	1 cut(s)	938
CseI	GACGC	1 cut(s)	173
CsiI	ACCWGGT	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	682
CviAII	CATG	4 cut(s)	218, 395, 883, 919
CviQI	GTAC	1 cut(s)	682
DdeI	CTNAG	3 cut(s)	758, 846, 912
DpnI	GATC	5 cut(s)	179, 820, 906, 927, 996
DpnII	GATC	5 cut(s)	177, 818, 904, 925, 994
EaeI	YGGCCR	1 cut(s)	73
Eam1104I	CTCTTC	2 cut(s)	560, 672
EarI	CTCTTC	2 cut(s)	560, 672
Ecl136II	GAGCTC	1 cut(s)	861
Eco24I	GRGCYC	1 cut(s)	863
Eco53kI	GAGCTC	1 cut(s)	861
Eco57I	CTGAAG	3 cut(s)	584, 696, 968
EcoICRI	GAGCTC	1 cut(s)	861
EcoNI	CCTNNNNNAGG	2 cut(s)	171, 384
EcoO109I	RGGNCCY	1 cut(s)	938
EcoRII	CCWGG	3 cut(s)	166, 379, 941
EcoT38I	GRGCYC	1 cut(s)	863
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	4 cut(s)	221, 398, 886, 922
FaiI	YATR	9 cut(s)	219, 396, 424, 686, 794, 884, 920, 1032, 1064
FalI	AAGNNNNNCTT	2 cut(s)	751, 783
FaqI	GGGAC	1 cut(s)	485
FatI	CATG	4 cut(s)	217, 394, 882, 918
FauI	CCCGC	1 cut(s)	53
Fnu4HI	GCNGC	3 cut(s)	354, 576, 745
FokI	GGATG	2 cut(s)	64, 812
FriOI	GRGCYC	1 cut(s)	863
Fsp4HI	GCNGC	3 cut(s)	354, 576, 745
FspBI	CTAG	4 cut(s)	18, 302, 588, 867
GluI	GCNGC	3 cut(s)	354, 576, 745
GsaI	CCCAGC	1 cut(s)	59
GsuI	CTGGAG	1 cut(s)	874
HaeIII	GGCC	2 cut(s)	75, 939
HapII	CCGG	1 cut(s)	181
HgaI	GACGC	1 cut(s)	173
Hin1I	GRCGYC	1 cut(s)	184
Hin1II	CATG	4 cut(s)	221, 398, 886, 922
HinfI	GANTC	9 cut(s)	262, 344, 391, 584, 737, 762, 788, 797, 1019
HpaII	CCGG	1 cut(s)	181
HphI	GGTGA	1 cut(s)	614
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188I	TCNGA	2 cut(s)	784, 1086
Hpy8I	GTNNAC	1 cut(s)	41
Hpy99I	CGWCG	1 cut(s)	189
HpyAV	CCTTC	3 cut(s)	119, 203, 272
HpyCH4III	ACNGT	2 cut(s)	154, 809
HpyCH4IV	ACGT	5 cut(s)	37, 407, 498, 529, 623
HpyCH4V	TGCA	5 cut(s)	161, 217, 356, 506, 755
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	3 cut(s)	758, 846, 912
HpySE526I	ACGT	5 cut(s)	37, 407, 498, 529, 623
Hsp92I	GRCGYC	1 cut(s)	184
Hsp92II	CATG	4 cut(s)	221, 398, 886, 922
Kzo9I	GATC	5 cut(s)	177, 818, 904, 925, 994
LmnI	GCTCC	2 cut(s)	382, 858
Lsp1109I	GCAGC	3 cut(s)	340, 587, 756
LweI	GCATC	3 cut(s)	42, 728, 823
MabI	ACCWGGT	1 cut(s)	166
MaeI	CTAG	4 cut(s)	18, 302, 588, 867
MaeII	ACGT	5 cut(s)	37, 407, 498, 529, 623
MaeIII	GTNAC	3 cut(s)	10, 154, 809
MalI	GATC	5 cut(s)	179, 820, 906, 927, 996
MboI	GATC	5 cut(s)	177, 818, 904, 925, 994
MflI	RGATCY	3 cut(s)	177, 904, 925
MhlI	GDGCHC	1 cut(s)	863
MlsI	TGGCCA	1 cut(s)	75
MluCI	AATT	3 cut(s)	701, 876, 1053
MluNI	TGGCCA	1 cut(s)	75
MlyI	GAGTC	3 cut(s)	256, 771, 791
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	6 cut(s)	73, 115, 136, 229, 598, 966
Mox20I	TGGCCA	1 cut(s)	75
MroXI	GAANNNNTTC	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	75
MseI	TTAA	2 cut(s)	456, 1044
MslI	CAYNNNNRTG	1 cut(s)	1035
Msp20I	TGGCCA	1 cut(s)	75
MspI	CCGG	1 cut(s)	181
MspR9I	CCNGG	3 cut(s)	168, 381, 943
Mva1269I	GAATGC	1 cut(s)	1001
MvaI	CCWGG	3 cut(s)	168, 381, 943
MwoI	GCNNNNNNNGC	1 cut(s)	52
NdeII	GATC	5 cut(s)	177, 818, 904, 925, 994
NlaIII	CATG	4 cut(s)	221, 398, 886, 922
NlaIV	GGNNCC	4 cut(s)	179, 378, 906, 940
NmuCI	GTSAC	1 cut(s)	154
NspI	RCATGY	2 cut(s)	221, 922
PagI	TCATGA	1 cut(s)	394
PctI	GAATGC	1 cut(s)	1001
PdmI	GAANNNNTTC	1 cut(s)	297
PfeI	GAWTC	6 cut(s)	344, 391, 584, 737, 788, 1019
PfoI	TCCNGGA	1 cut(s)	379
PkrI	GCNGC	3 cut(s)	355, 577, 746
PleI	GAGTC	3 cut(s)	256, 770, 791
PpsI	GAGTC	3 cut(s)	256, 770, 791
PshBI	ATTAAT	1 cut(s)	456
Psp124BI	GAGCTC	1 cut(s)	863
Psp1406I	AACGTT	1 cut(s)	407
Psp6I	CCWGG	3 cut(s)	166, 379, 941
PspFI	CCCAGC	1 cut(s)	55
PspGI	CCWGG	3 cut(s)	166, 379, 941
PspN4I	GGNNCC	4 cut(s)	179, 378, 906, 940
PspPI	GGNCC	1 cut(s)	938
PstI	CTGCAG	1 cut(s)	358
PstNI	CAGNNNCTG	2 cut(s)	152, 296
PsuI	RGATCY	3 cut(s)	177, 904, 925
RsaI	GTAC	1 cut(s)	683
RsaNI	GTAC	1 cut(s)	682
RseI	CAYNNNNRTG	1 cut(s)	1035
SacI	GAGCTC	1 cut(s)	863
SaqAI	TTAA	2 cut(s)	456, 1044
SatI	GCNGC	3 cut(s)	354, 576, 745
Sau3AI	GATC	5 cut(s)	177, 818, 904, 925, 994
Sau96I	GGNCC	1 cut(s)	938
SchI	GAGTC	3 cut(s)	256, 771, 791
ScrFI	CCNGG	3 cut(s)	168, 381, 943
SduI	GDGCHC	1 cut(s)	863
SexAI	ACCWGGT	1 cut(s)	166
SfaNI	GCATC	3 cut(s)	42, 728, 823
SfcI	CTRYAG	1 cut(s)	354
SmiMI	CAYNNNNRTG	1 cut(s)	1035
SmlI	CTYRAG	2 cut(s)	119, 138
SmoI	CTYRAG	2 cut(s)	119, 138
SpeI	ACTAGT	1 cut(s)	866
Sse9I	AATT	3 cut(s)	701, 876, 1053
SsiI	CCGC	2 cut(s)	44, 60
SspMI	CTAG	4 cut(s)	18, 302, 588, 867
SstI	GAGCTC	1 cut(s)	863
StyD4I	CCNGG	3 cut(s)	166, 379, 941
TaaI	ACNGT	2 cut(s)	154, 809
TaiI	ACGT	5 cut(s)	40, 410, 501, 532, 626
TaqI	TCGA	5 cut(s)	260, 642, 863, 960, 1017
TasI	AATT	3 cut(s)	701, 876, 1053
TatI	WGTACW	1 cut(s)	681
TfiI	GAWTC	6 cut(s)	344, 391, 584, 737, 788, 1019
Tru1I	TTAA	2 cut(s)	456, 1044
Tru9I	TTAA	2 cut(s)	456, 1044
TscAI	CASTG	1 cut(s)	207
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	3 cut(s)	353, 575, 744
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	4 cut(s)	383, 411, 486, 899
TspRI	CASTG	1 cut(s)	207
VspI	ATTAAT	1 cut(s)	456
XagI	CCTNNNNNAGG	2 cut(s)	171, 384
XbaI	TCTAGA	1 cut(s)	301
XceI	RCATGY	2 cut(s)	221, 922
XmnI	GAANNNNTTC	1 cut(s)	297
XspI	CTAG	4 cut(s)	18, 302, 588, 867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.