Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008132

Physical Location & Seq

Genomic Coordinates Forward (+)

66504412 .. 66507651

Gene Structure 3240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41378

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGTTTGGAGTTACTGCTAGTGACGGAAGTAGGAGACGTTTACCGCAATGGATGCTGGGCGGGTCATCTACTGGCCAAGAGGGGAAGTCCAGCAATGTTGAAGAAAGGGGCAACCAGCTTGAGGAAGGACTTGCTTCTCAAGAGGCAGAAACTGTGACTGCAAAACCTGGTAAAGGGATCTGGCGTCGTGAAAAGGAAACACTGGGAGAAGGCTTGCATGTTCTTCAAAAGTGTGAGGCAAAGAAAAGAAAGAGAAAATCAACTCAACAAGATGAAGAATTTGAAGGTAATGACCCAGTAGCTGTTCTAGAGAAGAAGTGTAGTGGGCGTGGGAGAAGAAAAGTTCAGGAATCTATTGCTGCAGATAGGCAAAAAGCAAAGGCTCCTGGAAAAGGGATTCATGAAAAGAAAACGTTGGGAGAGAACTCATACATTCTTGCAAAATGTGAGACAAAAAGGATTAGTAGTAAAACTAATGAACAAGATACGGATTTTGATGGCAACGCACCTGCAAGTTTTACAGAGAAGATTGGACGTGAGAGAAGAAAAGTTCAAGAAACAGCTGTCCTGAAGAGACAAGAAGCAAAGGATTCTAGCTGTGGAAGTGGTGAGGAACGAGAAGTCCAGACTTCAAGTGATGATGATGTTGAACTGACAGCAGAAGATTTAGTGATGATTGCTGAAGAGTACATAAAAGCTGATAGGAAATTAGTGCCAGAAAAAGCATCAAATCAAGAATGTGAATCAGGCAGCAGACTTGCACTAAGAGTCGCTTCCAGTTGTAAGTCAGATGATTCTATGGACTCCCAAAACTGTAACGCAAGATCACTCATCCAAGATGCTACCAGGTCTAAGCCTAACGGGAGCTCGACTAGTGAAGAAATTGCCTTGAACTCCAATAGAACAGGGGATCCTGCTCAGGACATGCTGGATCTGTTTTTAGGCCCCTGGCTGAAGAAACCTGTCGAGAAGGAAGCAAGGACTGACATTTTGACAGACGATCTGGCATTTTCCTACAGAGTCGAGTCACAAACTCATAGTAATGTTGTTAAAGAAGAAATTGCCCCCATAATGAAGAAGAAGACCAGTCTGAAAGACAAGGTGGCAATGTTTCTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

373

Amino Acids

41.29

Weight (kDa)

6.17

Isoelectric Point (pI)

50.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008132)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36500 FvH4_4g36500
malus_domestica	MD13G1008600.v1.1
prunus_persica	Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1
pyrus_communis	pycom13g00720
rosa_chinensis	RchiOBHm_Chr4g0446261
rosa_laevigata	RLG00000005676
rosa_multiflora	Rmu_co8265537.1_g000001 Rmu_sc0022410.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386660
rosa_rugosa	Rorug04G0369100 Rorug04G0369200 Rorug04G0369300
rosa_samantha	Rh4AG431100 Rh4BG440500 Rh4CG457800 Rh4DG439000
rosa_wichuraiana	Rw4G036830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	517
Acc36I	ACCTGC	1 cut(s)	517
AciI	CCGC	2 cut(s)	44, 60
AclI	AACGTT	1 cut(s)	413
AclWI	GGATC	4 cut(s)	185, 905, 918, 939
AcoI	YGGCCR	1 cut(s)	73
AcsI	RAATTY	1 cut(s)	278
AcuI	CTGAAG	3 cut(s)	590, 702, 974
AcyI	GRCGYC	1 cut(s)	184
AfaI	GTAC	1 cut(s)	689
AfiI	CCNNNNNNNGG	3 cut(s)	121, 173, 392
AgsI	TTSAA	7 cut(s)	101, 227, 284, 554, 633, 650, 892
AhlI	ACTAGT	1 cut(s)	872
AjiI	CACGTC	1 cut(s)	536
AjnI	CCWGG	4 cut(s)	166, 385, 845, 947
AloI	GAACNNNNNNTCC	4 cut(s)	606, 638, 895, 927
AluBI	AGCT	6 cut(s)	118, 302, 563, 597, 698, 867
AluI	AGCT	6 cut(s)	118, 302, 563, 597, 698, 867
Alw21I	GWGCWC	1 cut(s)	869
Alw26I	GTCTC	3 cut(s)	28, 443, 568
AlwI	GGATC	4 cut(s)	185, 905, 918, 939
AlwNI	CAGNNNCTG	2 cut(s)	152, 302
AoxI	GGCC	2 cut(s)	73, 943
ApeKI	GCWGC	2 cut(s)	359, 750
ApoI	RAATTY	1 cut(s)	278
ArsI	GACNNNNNNTTYG	2 cut(s)	973, 1005
AspS9I	GGNCC	1 cut(s)	944
AsuHPI	GGTGA	1 cut(s)	620
BalI	TGGCCA	1 cut(s)	75
BamHI	GGATCC	1 cut(s)	910
BanII	GRGCYC	1 cut(s)	869
BbsI	GAAGAC	1 cut(s)	1088
Bbv12I	GWGCWC	1 cut(s)	869
BbvI	GCAGC	2 cut(s)	346, 762
BccI	CCATC	1 cut(s)	491
BciT130I	CCWGG	4 cut(s)	168, 387, 847, 949
BcoDI	GTCTC	3 cut(s)	28, 443, 568
BcuI	ACTAGT	1 cut(s)	872
BfaI	CTAG	4 cut(s)	18, 308, 594, 873
BfmI	CTRYAG	2 cut(s)	360, 1015
BfuAI	ACCTGC	1 cut(s)	517
BisI	GCNGC	2 cut(s)	360, 751
BlsI	GCNGC	2 cut(s)	361, 752
Bme1390I	CCNGG	4 cut(s)	168, 387, 847, 949
BmgBI	CACGTC	1 cut(s)	536
BmgT120I	GGNCC	1 cut(s)	944
BmiI	GGNNCC	3 cut(s)	384, 912, 946
BmrFI	CCNGG	4 cut(s)	168, 387, 847, 949
BmrI	ACTGGG	2 cut(s)	212, 290
BmsI	GCATC	3 cut(s)	42, 734, 829
BmuI	ACTGGG	2 cut(s)	212, 290
BpiI	GAAGAC	1 cut(s)	1088
Bpu10I	CCTNAGC	1 cut(s)	918
BpuEI	CTTGAG	2 cut(s)	123, 140
BsaHI	GRCGYC	1 cut(s)	184
BsaJI	CCNNGG	1 cut(s)	947
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 173, 392
Bse1I	ACTGG	5 cut(s)	76, 207, 296, 777, 1086
Bse3DI	GCAATG	3 cut(s)	53, 100, 1113
BseBI	CCWGG	4 cut(s)	168, 387, 847, 949
BseDI	CCNNGG	1 cut(s)	947
BseGI	GGATG	2 cut(s)	57, 831
BseLI	CCNNNNNNNGG	3 cut(s)	121, 173, 392
BseMI	GCAATG	3 cut(s)	53, 100, 1113
BseMII	CTCAG	1 cut(s)	932
BseNI	ACTGG	5 cut(s)	76, 207, 296, 777, 1086
BseXI	GCAGC	2 cut(s)	346, 762
BseYI	CCCAGC	1 cut(s)	55
BshFI	GGCC	2 cut(s)	75, 945
BsiHKAI	GWGCWC	1 cut(s)	869
BslI	CCNNNNNNNGG	3 cut(s)	121, 173, 392
BsmAI	GTCTC	3 cut(s)	28, 443, 568
BsmBI	CGTCTC	1 cut(s)	28
BsnI	GGCC	2 cut(s)	75, 945
Bsp1286I	GDGCHC	1 cut(s)	869
Bsp143I	GATC	5 cut(s)	177, 824, 910, 931, 1000
BspACI	CCGC	2 cut(s)	44, 60
BspANI	GGCC	2 cut(s)	75, 945
BspCNI	CTCAG	1 cut(s)	931
BspHI	TCATGA	1 cut(s)	400
BspLI	GGNNCC	3 cut(s)	384, 912, 946
BspMAI	CTGCAG	1 cut(s)	364
BspMI	ACCTGC	1 cut(s)	517
BspPI	GGATC	4 cut(s)	185, 905, 918, 939
BsrDI	GCAATG	3 cut(s)	53, 100, 1113
BsrI	ACTGG	5 cut(s)	76, 207, 296, 777, 1086
BssECI	CCNNGG	1 cut(s)	947
BssMI	GATC	5 cut(s)	177, 824, 910, 931, 1000
BssNI	GRCGYC	1 cut(s)	184
Bst2UI	CCWGG	4 cut(s)	168, 387, 847, 949
Bst4CI	ACNGT	2 cut(s)	154, 815
Bst6I	CTCTTC	2 cut(s)	566, 678
BstACI	GRCGYC	1 cut(s)	184
BstAPI	GCANNNNNTGC	1 cut(s)	52
BstC8I	GCNNGC	1 cut(s)	215
BstDEI	CTNAG	3 cut(s)	764, 852, 918
BstENI	CCTNNNNNAGG	2 cut(s)	171, 390
BstF5I	GGATG	2 cut(s)	57, 831
BstKTI	GATC	5 cut(s)	180, 827, 913, 934, 1003
BstMAI	GTCTC	3 cut(s)	28, 443, 568
BstMBI	GATC	5 cut(s)	177, 824, 910, 931, 1000
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstNI	CCWGG	4 cut(s)	168, 387, 847, 949
BstNSI	RCATGY	2 cut(s)	221, 928
BstSCI	CCNGG	4 cut(s)	166, 385, 845, 947
BstSFI	CTRYAG	2 cut(s)	360, 1015
BstV1I	GCAGC	2 cut(s)	346, 762
BstV2I	GAAGAC	1 cut(s)	1088
BstX2I	RGATCY	3 cut(s)	177, 910, 931
BstYI	RGATCY	3 cut(s)	177, 910, 931
BsuRI	GGCC	2 cut(s)	75, 945
BtrI	CACGTC	1 cut(s)	536
BtsCI	GGATG	2 cut(s)	57, 831
BtsIMutI	CAGTG	1 cut(s)	200
BveI	ACCTGC	1 cut(s)	517
Cac8I	GCNNGC	1 cut(s)	215
CaiI	CAGNNNCTG	2 cut(s)	152, 302
CciI	TCATGA	1 cut(s)	400
Cfr13I	GGNCC	1 cut(s)	944
CseI	GACGC	1 cut(s)	173
CsiI	ACCWGGT	2 cut(s)	166, 845
Csp6I	GTAC	1 cut(s)	688
CviAII	CATG	3 cut(s)	218, 401, 925
CviQI	GTAC	1 cut(s)	688
DdeI	CTNAG	3 cut(s)	764, 852, 918
DpnI	GATC	5 cut(s)	179, 826, 912, 933, 1002
DpnII	GATC	5 cut(s)	177, 824, 910, 931, 1000
EaeI	YGGCCR	1 cut(s)	73
Eam1104I	CTCTTC	2 cut(s)	566, 678
EarI	CTCTTC	2 cut(s)	566, 678
Ecl136II	GAGCTC	1 cut(s)	867
Eco24I	GRGCYC	1 cut(s)	869
Eco53kI	GAGCTC	1 cut(s)	867
Eco57I	CTGAAG	3 cut(s)	590, 702, 974
EcoICRI	GAGCTC	1 cut(s)	867
EcoNI	CCTNNNNNAGG	2 cut(s)	171, 390
EcoO109I	RGGNCCY	1 cut(s)	944
EcoRII	CCWGG	4 cut(s)	166, 385, 845, 947
EcoT38I	GRGCYC	1 cut(s)	869
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	3 cut(s)	221, 404, 928
FaiI	YATR	8 cut(s)	219, 402, 430, 692, 800, 926, 1038, 1070
FalI	AAGNNNNNCTT	2 cut(s)	757, 789
FatI	CATG	3 cut(s)	217, 400, 924
FauI	CCCGC	1 cut(s)	53
Fnu4HI	GCNGC	2 cut(s)	360, 751
FokI	GGATG	2 cut(s)	64, 818
FriOI	GRGCYC	1 cut(s)	869
Fsp4HI	GCNGC	2 cut(s)	360, 751
FspBI	CTAG	4 cut(s)	18, 308, 594, 873
GluI	GCNGC	2 cut(s)	360, 751
GsaI	CCCAGC	1 cut(s)	59
HaeIII	GGCC	2 cut(s)	75, 945
HgaI	GACGC	1 cut(s)	173
Hin1I	GRCGYC	1 cut(s)	184
Hin1II	CATG	3 cut(s)	221, 404, 928
HinfI	GANTC	9 cut(s)	350, 397, 590, 743, 768, 794, 803, 1020, 1025
HphI	GGTGA	1 cut(s)	620
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188I	TCNGA	2 cut(s)	790, 1092
Hpy8I	GTNNAC	1 cut(s)	41
Hpy99I	CGWCG	1 cut(s)	189
HpyAV	CCTTC	4 cut(s)	119, 203, 278, 964
HpyCH4III	ACNGT	2 cut(s)	154, 815
HpyCH4IV	ACGT	3 cut(s)	37, 413, 535
HpyCH4V	TGCA	6 cut(s)	161, 217, 362, 440, 512, 761
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	3 cut(s)	764, 852, 918
HpySE526I	ACGT	3 cut(s)	37, 413, 535
Hsp92I	GRCGYC	1 cut(s)	184
Hsp92II	CATG	3 cut(s)	221, 404, 928
Kzo9I	GATC	5 cut(s)	177, 824, 910, 931, 1000
LmnI	GCTCC	2 cut(s)	388, 864
Lsp1109I	GCAGC	2 cut(s)	346, 762
LweI	GCATC	3 cut(s)	42, 734, 829
MabI	ACCWGGT	2 cut(s)	166, 845
MaeI	CTAG	4 cut(s)	18, 308, 594, 873
MaeII	ACGT	3 cut(s)	37, 413, 535
MaeIII	GTNAC	5 cut(s)	10, 20, 154, 815, 1026
MalI	GATC	5 cut(s)	179, 826, 912, 933, 1002
MboI	GATC	5 cut(s)	177, 824, 910, 931, 1000
MflI	RGATCY	3 cut(s)	177, 910, 931
MhlI	GDGCHC	1 cut(s)	869
MlsI	TGGCCA	1 cut(s)	75
MluCI	AATT	4 cut(s)	278, 707, 882, 1059
MluNI	TGGCCA	1 cut(s)	75
MlyI	GAGTC	4 cut(s)	777, 797, 1029, 1034
MnlI	CCTC	5 cut(s)	73, 115, 136, 229, 604
Mox20I	TGGCCA	1 cut(s)	75
MscI	TGGCCA	1 cut(s)	75
MseI	TTAA	1 cut(s)	1050
MslI	CAYNNNNRTG	1 cut(s)	1041
Msp20I	TGGCCA	1 cut(s)	75
MspA1I	CMGCKG	1 cut(s)	563
MspR9I	CCNGG	4 cut(s)	168, 387, 847, 949
MvaI	CCWGG	4 cut(s)	168, 387, 847, 949
MwoI	GCNNNNNNNGC	1 cut(s)	52
NdeII	GATC	5 cut(s)	177, 824, 910, 931, 1000
NlaIII	CATG	3 cut(s)	221, 404, 928
NlaIV	GGNNCC	3 cut(s)	384, 912, 946
NmuCI	GTSAC	3 cut(s)	20, 154, 1026
NspI	RCATGY	2 cut(s)	221, 928
PagI	TCATGA	1 cut(s)	400
PaqCI	CACCTGC	1 cut(s)	517
PfeI	GAWTC	5 cut(s)	350, 397, 590, 743, 794
PfoI	TCCNGGA	1 cut(s)	385
PkrI	GCNGC	2 cut(s)	361, 752
PleI	GAGTC	4 cut(s)	776, 797, 1028, 1033
PpsI	GAGTC	4 cut(s)	776, 797, 1028, 1033
Psp124BI	GAGCTC	1 cut(s)	869
Psp1406I	AACGTT	1 cut(s)	413
Psp6I	CCWGG	4 cut(s)	166, 385, 845, 947
PspFI	CCCAGC	1 cut(s)	55
PspGI	CCWGG	4 cut(s)	166, 385, 845, 947
PspN4I	GGNNCC	3 cut(s)	384, 912, 946
PspPI	GGNCC	1 cut(s)	944
PstI	CTGCAG	1 cut(s)	364
PstNI	CAGNNNCTG	2 cut(s)	152, 302
PsuI	RGATCY	3 cut(s)	177, 910, 931
PvuII	CAGCTG	1 cut(s)	563
RsaI	GTAC	1 cut(s)	689
RsaNI	GTAC	1 cut(s)	688
RseI	CAYNNNNRTG	1 cut(s)	1041
SacI	GAGCTC	1 cut(s)	869
SaqAI	TTAA	1 cut(s)	1050
SatI	GCNGC	2 cut(s)	360, 751
Sau3AI	GATC	5 cut(s)	177, 824, 910, 931, 1000
Sau96I	GGNCC	1 cut(s)	944
SchI	GAGTC	4 cut(s)	777, 797, 1029, 1034
ScrFI	CCNGG	4 cut(s)	168, 387, 847, 949
SduI	GDGCHC	1 cut(s)	869
SexAI	ACCWGGT	2 cut(s)	166, 845
SfaNI	GCATC	3 cut(s)	42, 734, 829
SfcI	CTRYAG	2 cut(s)	360, 1015
SmiMI	CAYNNNNRTG	1 cut(s)	1041
SmlI	CTYRAG	2 cut(s)	119, 138
SmoI	CTYRAG	2 cut(s)	119, 138
SpeI	ACTAGT	1 cut(s)	872
Sse9I	AATT	4 cut(s)	278, 707, 882, 1059
SsiI	CCGC	2 cut(s)	44, 60
SspMI	CTAG	4 cut(s)	18, 308, 594, 873
SstI	GAGCTC	1 cut(s)	869
StyD4I	CCNGG	4 cut(s)	166, 385, 845, 947
TaaI	ACNGT	2 cut(s)	154, 815
TaiI	ACGT	3 cut(s)	40, 416, 538
TaqI	TCGA	3 cut(s)	869, 966, 1023
TasI	AATT	4 cut(s)	278, 707, 882, 1059
TatI	WGTACW	1 cut(s)	687
TfiI	GAWTC	5 cut(s)	350, 397, 590, 743, 794
Tru1I	TTAA	1 cut(s)	1050
Tru9I	TTAA	1 cut(s)	1050
TscAI	CASTG	1 cut(s)	207
TseFI	GTSAC	3 cut(s)	20, 154, 1026
TseI	GCWGC	2 cut(s)	359, 750
Tsp45I	GTSAC	3 cut(s)	20, 154, 1026
TspDTI	ATGAA	5 cut(s)	288, 389, 417, 492, 1088
TspGWI	ACGGA	2 cut(s)	39, 503
TspRI	CASTG	1 cut(s)	207
XagI	CCTNNNNNAGG	2 cut(s)	171, 390
XapI	RAATTY	1 cut(s)	278
XbaI	TCTAGA	1 cut(s)	307
XceI	RCATGY	2 cut(s)	221, 928
XspI	CTAG	4 cut(s)	18, 308, 594, 873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.