Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008132

Physical Location & Seq

Genomic Coordinates Reverse (-)

32241848 .. 32244940

Gene Structure 3093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G344100.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGTGGGAGTTGCTCCAGAATCAGATGATGGAAGTAGGAGACGTTTACCACAGTGGATGCTGGGCATATCTTCTGCTGGCCAGGTAAGGAAGCCTAGTAATGGTAAAGAGGAAGGACCTGCCTCTTATGAAACTGAAACATTGGGAGAAAACTCACACGTTCTTGTAAAATGTGAGACAAAGAGAAGAAAAAAAAAATCAACTGAACAAGAAGAAAAGTGTAGTGGACTTGGGAGAAGAAAAGTGCAGGAGTCTGGTGCTCCAGAGAGACAAAAAGCAAAGGAAACACTGGGGGAGAACTCACATGTTCTTGTAAAATGTGAGGCAAAAAGAAGAAAAAGAAACTCAAATGAACAGGATGCAGAATGTGATGGAACTTTTCCTGAGAAGAATTGTAATGGACATGGGAGAAGAAAAGTTCAGGAATCTGATGCTCCGAAGAAGGAAAAAGCAAAGGGTTCCAGCTGTGGAAGTGATGAAGAACTAGAAGTCCGGACTTGGACTGATGATGATGTTGAACTGACAGTGGAGGATTTAGTGATCATTGCTGAAGAGTATATTAGAGCTGATGGGAATATAAATAAAGAAGAAGAAGCATCGAACCAAGAATGTGAATCAGACAGCAGATTTCCAGAAATAGTCTCTTCCGGTAATGAGTTAGAAGATTCTGCTGATGCCCAAATTTGTAATCGAAGATCACTCATCGCAGATACAACTACTTTTAAGCCGAACGGGAGTTTGGCAAGTAAAGGAATTGGCTTAAATTCAGGTGGAACAGGGGATCCTGCTCAGGACATGCTGGATCTGTTTTTAGGCCCCTTGATGAAGAAAACCGTCGAGAAGGAGAGTGAGAGTCGATTTTTGACAGAGGATGTGACATTTGCCCATGAAATCATTAGAGAAAGTCATAGTAATGTTGTTAGAGAAGGAATTGCCCCCATAATGAAGAAGAAGAGCAGTCTCAAAGACAAGGTGGCAATGTTTCTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

331

Amino Acids

36.49

Weight (kDa)

5.34

Isoelectric Point (pI)

58.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008132)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36500 FvH4_4g36500
malus_domestica	MD13G1008600.v1.1
prunus_persica	Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1
pyrus_communis	pycom13g00720
rosa_chinensis	RchiOBHm_Chr4g0446261
rosa_laevigata	RLG00000005676
rosa_multiflora	Rmu_co8265537.1_g000001 Rmu_sc0022410.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386660
rosa_rugosa	Rorug04G0369100 Rorug04G0369200 Rorug04G0369300
rosa_samantha	Rh4AG431100 Rh4BG440500 Rh4CG457800 Rh4DG439000
rosa_wichuraiana	Rw4G036830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	127
AccIII	TCCGGA	1 cut(s)	492
AclWI	GGATC	3 cut(s)	776, 789, 810
AcoI	YGGCCR	1 cut(s)	79
AcsI	RAATTY	2 cut(s)	681, 763
AcuI	CTGAAG	1 cut(s)	570
AfiI	CCNNNNNNNGG	1 cut(s)	101
AflIII	ACRYGT	2 cut(s)	157, 304
AgsI	TTSAA	1 cut(s)	518
AjnI	CCWGG	1 cut(s)	81
AjuI	GAANNNNNNNTTGG	2 cut(s)	722, 754
AloI	GAACNNNNNNTCC	4 cut(s)	474, 506, 766, 798
AluBI	AGCT	2 cut(s)	465, 566
AluI	AGCT	2 cut(s)	465, 566
Alw21I	GWGCWC	1 cut(s)	262
Alw26I	GTCTC	5 cut(s)	34, 170, 262, 646, 965
AlwI	GGATC	3 cut(s)	776, 789, 810
Aor13HI	TCCGGA	1 cut(s)	492
AoxI	GGCC	2 cut(s)	79, 814
ApoI	RAATTY	2 cut(s)	681, 763
AspS9I	GGNCC	2 cut(s)	116, 815
AvaII	GGWCC	1 cut(s)	116
BalI	TGGCCA	1 cut(s)	81
BamHI	GGATCC	1 cut(s)	781
Bbv12I	GWGCWC	1 cut(s)	262
BccI	CCATC	3 cut(s)	23, 365, 563
BciT130I	CCWGG	1 cut(s)	83
BclI	TGATCA	1 cut(s)	540
BcoDI	GTCTC	5 cut(s)	34, 170, 262, 646, 965
BfaI	CTAG	2 cut(s)	96, 485
BfuAI	ACCTGC	1 cut(s)	127
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	2 cut(s)	116, 815
BmiI	GGNNCC	3 cut(s)	460, 783, 817
BmrFI	CCNGG	1 cut(s)	83
BmrI	ACTGGG	1 cut(s)	299
BmsI	GCATC	5 cut(s)	48, 349, 421, 605, 664
BmuI	ACTGGG	1 cut(s)	299
BpmI	CTGGAG	1 cut(s)	246
Bpu10I	CCTNAGC	1 cut(s)	789
BsaWI	WCCGGW	2 cut(s)	492, 647
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse1I	ACTGG	1 cut(s)	294
Bse3DI	GCAATG	2 cut(s)	543, 984
BseAI	TCCGGA	1 cut(s)	492
BseBI	CCWGG	1 cut(s)	83
BseGI	GGATG	3 cut(s)	63, 364, 877
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMI	GCAATG	2 cut(s)	543, 984
BseMII	CTCAG	2 cut(s)	375, 803
BseNI	ACTGG	1 cut(s)	294
BseYI	CCCAGC	1 cut(s)	61
BsgI	GTGCAG	1 cut(s)	266
BshFI	GGCC	2 cut(s)	81, 816
BsiHKAI	GWGCWC	1 cut(s)	262
BsiSI	CCGG	2 cut(s)	493, 648
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmAI	GTCTC	5 cut(s)	34, 170, 262, 646, 965
BsmBI	CGTCTC	1 cut(s)	34
BsnI	GGCC	2 cut(s)	81, 816
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp13I	TCCGGA	1 cut(s)	492
Bsp143I	GATC	4 cut(s)	540, 695, 781, 802
BspANI	GGCC	2 cut(s)	81, 816
BspCNI	CTCAG	2 cut(s)	376, 802
BspEI	TCCGGA	1 cut(s)	492
BspLI	GGNNCC	3 cut(s)	460, 783, 817
BspMI	ACCTGC	1 cut(s)	127
BspPI	GGATC	3 cut(s)	776, 789, 810
BspQI	GCTCTTC	1 cut(s)	947
BsrDI	GCAATG	2 cut(s)	543, 984
BsrI	ACTGG	1 cut(s)	294
BssMI	GATC	4 cut(s)	540, 695, 781, 802
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	3 cut(s)	54, 526, 835
Bst6I	CTCTTC	3 cut(s)	546, 649, 947
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	2 cut(s)	384, 789
BstF5I	GGATG	3 cut(s)	63, 364, 877
BstKTI	GATC	4 cut(s)	543, 698, 784, 805
BstMAI	GTCTC	5 cut(s)	34, 170, 262, 646, 965
BstMBI	GATC	4 cut(s)	540, 695, 781, 802
BstNI	CCWGG	1 cut(s)	83
BstNSI	RCATGY	2 cut(s)	308, 799
BstSCI	CCNGG	1 cut(s)	81
BstX2I	RGATCY	2 cut(s)	781, 802
BstYI	RGATCY	2 cut(s)	781, 802
BsuRI	GGCC	2 cut(s)	81, 816
BtgZI	GCGATG	1 cut(s)	688
BtsCI	GGATG	3 cut(s)	63, 364, 877
BtsIMutI	CAGTG	3 cut(s)	59, 287, 531
BveI	ACCTGC	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	79
Cfr13I	GGNCC	2 cut(s)	116, 815
CviAII	CATG	4 cut(s)	305, 404, 796, 887
CviJI	RGCY	7 cut(s)	81, 94, 465, 566, 727, 759, 816
CviKI_1	RGCY	7 cut(s)	81, 94, 465, 566, 727, 759, 816
DdeI	CTNAG	2 cut(s)	384, 789
DpnI	GATC	4 cut(s)	542, 697, 783, 804
DpnII	GATC	4 cut(s)	540, 695, 781, 802
EaeI	YGGCCR	1 cut(s)	79
Eam1104I	CTCTTC	3 cut(s)	546, 649, 947
EarI	CTCTTC	3 cut(s)	546, 649, 947
Eco47I	GGWCC	1 cut(s)	116
Eco57I	CTGAAG	1 cut(s)	570
EcoO109I	RGGNCCY	2 cut(s)	116, 815
EcoRII	CCWGG	1 cut(s)	81
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	4 cut(s)	308, 407, 799, 890
FatI	CATG	4 cut(s)	304, 403, 795, 886
FbaI	TGATCA	1 cut(s)	540
FokI	GGATG	3 cut(s)	70, 371, 884
FspBI	CTAG	2 cut(s)	96, 485
GsaI	CCCAGC	1 cut(s)	65
GsuI	CTGGAG	1 cut(s)	246
HaeIII	GGCC	2 cut(s)	81, 816
HapII	CCGG	2 cut(s)	493, 648
Hin1II	CATG	4 cut(s)	308, 407, 799, 890
HinfI	GANTC	6 cut(s)	20, 251, 425, 614, 665, 853
HpaII	CCGG	2 cut(s)	493, 648
Hpy166II	GTNNAC	2 cut(s)	47, 227
Hpy188I	TCNGA	4 cut(s)	25, 430, 438, 619
Hpy188III	TCNNGA	9 cut(s)	17, 263, 383, 422, 493, 632, 791, 838, 986
Hpy8I	GTNNAC	2 cut(s)	47, 227
Hpy99I	CGWCG	1 cut(s)	839
HpyAV	CCTTC	4 cut(s)	107, 436, 835, 920
HpyCH4III	ACNGT	3 cut(s)	54, 526, 835
HpyCH4IV	ACGT	2 cut(s)	43, 159
HpyCH4V	TGCA	2 cut(s)	247, 362
HpyF3I	CTNAG	2 cut(s)	384, 789
HpySE526I	ACGT	2 cut(s)	43, 159
Hsp92II	CATG	4 cut(s)	308, 407, 799, 890
Kpn2I	TCCGGA	1 cut(s)	492
Ksp22I	TGATCA	1 cut(s)	540
Kzo9I	GATC	4 cut(s)	540, 695, 781, 802
LguI	GCTCTTC	1 cut(s)	947
LmnI	GCTCC	3 cut(s)	19, 265, 439
LweI	GCATC	5 cut(s)	48, 349, 421, 605, 664
MaeI	CTAG	2 cut(s)	96, 485
MaeII	ACGT	2 cut(s)	43, 159
MaeIII	GTNAC	1 cut(s)	874
MalI	GATC	4 cut(s)	542, 697, 783, 804
MboI	GATC	4 cut(s)	540, 695, 781, 802
MflI	RGATCY	2 cut(s)	781, 802
MhlI	GDGCHC	1 cut(s)	262
MlsI	TGGCCA	1 cut(s)	81
MluCI	AATT	5 cut(s)	391, 681, 753, 763, 930
MluNI	TGGCCA	1 cut(s)	81
MlyI	GAGTC	2 cut(s)	260, 862
MnlI	CCTC	5 cut(s)	103, 133, 316, 523, 862
Mox20I	TGGCCA	1 cut(s)	81
MroI	TCCGGA	1 cut(s)	492
MscI	TGGCCA	1 cut(s)	81
MseI	TTAA	2 cut(s)	723, 761
MslI	CAYNNNNRTG	1 cut(s)	912
Msp20I	TGGCCA	1 cut(s)	81
MspA1I	CMGCKG	1 cut(s)	465
MspI	CCGG	2 cut(s)	493, 648
MspR9I	CCNGG	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	83
NdeII	GATC	4 cut(s)	540, 695, 781, 802
NlaIII	CATG	4 cut(s)	308, 407, 799, 890
NlaIV	GGNNCC	3 cut(s)	460, 783, 817
NmuCI	GTSAC	1 cut(s)	874
NspI	RCATGY	2 cut(s)	308, 799
PciI	ACATGT	1 cut(s)	304
PciSI	GCTCTTC	1 cut(s)	947
PfeI	GAWTC	4 cut(s)	20, 425, 614, 665
PleI	GAGTC	2 cut(s)	259, 861
PpsI	GAGTC	2 cut(s)	259, 861
PpuMI	RGGWCCY	1 cut(s)	116
PscI	ACATGT	1 cut(s)	304
Psp5II	RGGWCCY	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	81
PspFI	CCCAGC	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	3 cut(s)	460, 783, 817
PspPI	GGNCC	2 cut(s)	116, 815
PspPPI	RGGWCCY	1 cut(s)	116
PsuI	RGATCY	2 cut(s)	781, 802
PvuII	CAGCTG	1 cut(s)	465
RseI	CAYNNNNRTG	1 cut(s)	912
SapI	GCTCTTC	1 cut(s)	947
SaqAI	TTAA	2 cut(s)	723, 761
Sau3AI	GATC	4 cut(s)	540, 695, 781, 802
Sau96I	GGNCC	2 cut(s)	116, 815
SchI	GAGTC	2 cut(s)	260, 862
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	262
SetI	ASST	8 cut(s)	46, 87, 121, 162, 467, 568, 772, 975
SfaNI	GCATC	5 cut(s)	48, 349, 421, 605, 664
SinI	GGWCC	1 cut(s)	116
SmiMI	CAYNNNNRTG	1 cut(s)	912
Sse9I	AATT	5 cut(s)	391, 681, 753, 763, 930
SspMI	CTAG	2 cut(s)	96, 485
StyD4I	CCNGG	1 cut(s)	81
TaaI	ACNGT	3 cut(s)	54, 526, 835
TaiI	ACGT	2 cut(s)	46, 162
TaqI	TCGA	4 cut(s)	599, 691, 837, 856
TasI	AATT	5 cut(s)	391, 681, 753, 763, 930
TfiI	GAWTC	4 cut(s)	20, 425, 614, 665
Tru1I	TTAA	2 cut(s)	723, 761
Tru9I	TTAA	2 cut(s)	723, 761
TscAI	CASTG	3 cut(s)	59, 294, 531
TseFI	GTSAC	1 cut(s)	874
Tsp45I	GTSAC	1 cut(s)	874
TspDTI	ATGAA	6 cut(s)	144, 366, 492, 839, 903, 959
TspRI	CASTG	3 cut(s)	59, 294, 531
VpaK11BI	GGWCC	1 cut(s)	116
XapI	RAATTY	2 cut(s)	681, 763
XceI	RCATGY	2 cut(s)	308, 799
XspI	CTAG	2 cut(s)	96, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.