FvH4_4g37240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0017172
Physical Location & Seq
Reverse (-)
33795884 .. 33796339
456 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g37240.t1

Sequence Viewer

Length: 456 bp
ATGAGTCGAAACAAGGCGAAGACGAAGACGAGGAAAACGGAAGAGGATCAAGTGGAGGAGCTGCTCCGAGCAGCGCAGGACGATATGCTGCTCAGTCTCTCCGTAGACTCTCACATATCCCACCTTTCTGACGTCGAACGACGCTTCCAGGCCCTCAAGCTCAACAAGCCTACTCCTAAAGCAGCTGCTCCTCCTAATCCTAATTCTAATTCCACTGCCATTCAAGCGGATGTGGACCCAGAGCTCAAAGCAGTCCTCGGAGATGACCTGTCCGCCAGATTCGCAGCTCTCAAGGCCTCAATGCCTATGCCCTCTTCTTCTTCTTCTTCCATGTTCAACCCCCCCGACTACGACGACGACGCTGTTGATGAAGATGATGAAGTTGAAAAGCTGATGCGTTGGGCCAAGGACGCCGCTCGCCTTGACCCTTCTCCACCCTCCGACGATGAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.62

Weight (kDa)

4.57

Isoelectric Point (pI)

58.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24370
fragaria_vesca FvH4_4g37240
malus_domestica MD13G1002400.v1.1
prunus_persica Prupe.1G350000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0447031
rosa_laevigata RLG00000005611
rosa_multiflora Rmu_sc0014071.1_g000008 Rmu_sc0019356.1_g000003
rosa_roxburghii Rroxscaffold_5G00387350
rosa_rugosa Rorug04G0377200
rosa_samantha Rh4BG447700 Rh4CG464800
rosa_wichuraiana Rw4G037520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 135
AccBSI CCGCTC 1 cut(s) 416
AccI GTMKAC 1 cut(s) 105
AciI CCGC 3 cut(s) 227, 273, 414
AclWI GGATC 1 cut(s) 54
AcyI GRCGYC 2 cut(s) 132, 411
AgsI TTSAA 3 cut(s) 224, 337, 386
AjnI CCWGG 1 cut(s) 147
AloI GAACNNNNNNTCC 2 cut(s) 129, 161
AluBI AGCT 6 cut(s) 61, 160, 185, 244, 287, 391
AluI AGCT 6 cut(s) 61, 160, 185, 244, 287, 391
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 1 cut(s) 101
AlwI GGATC 1 cut(s) 54
AoxI GGCC 3 cut(s) 150, 294, 402
ApeKI GCWGC 6 cut(s) 61, 71, 88, 182, 185, 284
AspLEI GCGC 1 cut(s) 76
AspS9I GGNCC 3 cut(s) 151, 235, 402
AvaII GGWCC 1 cut(s) 235
BanII GRGCYC 1 cut(s) 246
BbsI GAAGAC 2 cut(s) 26, 32
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 6 cut(s) 48, 75, 83, 172, 194, 296
BciT130I CCWGG 1 cut(s) 149
BcoDI GTCTC 1 cut(s) 101
BisI GCNGC 7 cut(s) 62, 72, 89, 183, 186, 285, 414
BlsI GCNGC 7 cut(s) 63, 73, 90, 184, 187, 286, 415
Bme1390I CCNGG 1 cut(s) 149
Bme18I GGWCC 1 cut(s) 235
BmgT120I GGNCC 3 cut(s) 151, 235, 402
BmiI GGNNCC 1 cut(s) 237
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 1 cut(s) 384
BpiI GAAGAC 2 cut(s) 26, 32
BpuEI CTTGAG 2 cut(s) 140, 275
BsaHI GRCGYC 2 cut(s) 132, 411
BsaJI CCNNGG 2 cut(s) 256, 405
BseBI CCWGG 1 cut(s) 149
BseDI CCNNGG 2 cut(s) 256, 405
BseGI GGATG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 106
BseRI GAGGAG 2 cut(s) 71, 180
BseXI GCAGC 6 cut(s) 48, 75, 83, 172, 194, 296
BshFI GGCC 3 cut(s) 152, 296, 404
BsiHKAI GWGCWC 1 cut(s) 246
BsmAI GTCTC 1 cut(s) 101
BsnI GGCC 3 cut(s) 152, 296, 404
Bsp1286I GDGCHC 1 cut(s) 246
Bsp143I GATC 1 cut(s) 46
BspACI CCGC 3 cut(s) 227, 273, 414
BspANI GGCC 3 cut(s) 152, 296, 404
BspCNI CTCAG 1 cut(s) 105
BspLI GGNNCC 1 cut(s) 237
BspPI GGATC 1 cut(s) 54
BsrBI CCGCTC 1 cut(s) 416
BssECI CCNNGG 2 cut(s) 256, 405
BssMI GATC 1 cut(s) 46
BssNI GRCGYC 2 cut(s) 132, 411
BssT1I CCWWGG 1 cut(s) 405
Bst2UI CCWGG 1 cut(s) 149
Bst6I CTCTTC 2 cut(s) 36, 319
BstACI GRCGYC 2 cut(s) 132, 411
BstC8I GCNNGC 1 cut(s) 418
BstDEI CTNAG 1 cut(s) 92
BstF5I GGATG 1 cut(s) 235
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 1 cut(s) 49
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 5 cut(s) 166, 224, 281, 293, 410
BstNI CCWGG 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 147
BstV1I GCAGC 6 cut(s) 48, 75, 83, 172, 194, 296
BstV2I GAAGAC 2 cut(s) 26, 32
BsuRI GGCC 3 cut(s) 152, 296, 404
BtsCI GGATG 1 cut(s) 235
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 418
CfoI GCGC 1 cut(s) 76
Cfr13I GGNCC 3 cut(s) 151, 235, 402
CseI GACGC 3 cut(s) 150, 368, 419
CviAII CATG 1 cut(s) 331
DdeI CTNAG 1 cut(s) 92
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
Eam1104I CTCTTC 2 cut(s) 36, 319
EarI CTCTTC 2 cut(s) 36, 319
EciI GGCGGA 1 cut(s) 262
Ecl136II GAGCTC 1 cut(s) 244
Eco130I CCWWGG 1 cut(s) 405
Eco147I AGGCCT 1 cut(s) 296
Eco24I GRGCYC 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 235
Eco53kI GAGCTC 1 cut(s) 244
EcoICRI GAGCTC 1 cut(s) 244
EcoO109I RGGNCCY 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 147
EcoT14I CCWWGG 1 cut(s) 405
EcoT38I GRGCYC 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 405
FaeI CATG 1 cut(s) 334
FaiI YATR 4 cut(s) 86, 116, 308, 332
FatI CATG 1 cut(s) 330
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 7 cut(s) 62, 72, 89, 183, 186, 285, 414
FokI GGATG 1 cut(s) 242
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 7 cut(s) 62, 72, 89, 183, 186, 285, 414
GlaI GCGC 1 cut(s) 75
GluI GCNGC 7 cut(s) 62, 72, 89, 183, 186, 285, 414
HaeIII GGCC 3 cut(s) 152, 296, 404
HgaI GACGC 3 cut(s) 150, 368, 419
HhaI GCGC 1 cut(s) 76
Hin1I GRCGYC 2 cut(s) 132, 411
Hin1II CATG 1 cut(s) 334
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HinfI GANTC 3 cut(s) 4, 107, 279
Hpy166II GTNNAC 2 cut(s) 106, 235
Hpy188I TCNGA 4 cut(s) 68, 130, 260, 442
Hpy8I GTNNAC 2 cut(s) 106, 235
Hpy99I CGWCG 6 cut(s) 137, 144, 356, 359, 362, 446
HpyAV CCTTC 1 cut(s) 438
HpyCH4IV ACGT 1 cut(s) 132
HpyF10VI GCNNNNNNNGC 5 cut(s) 166, 224, 281, 293, 410
HpyF3I CTNAG 1 cut(s) 92
HpySE526I ACGT 1 cut(s) 132
Hsp92I GRCGYC 2 cut(s) 132, 411
Hsp92II CATG 1 cut(s) 334
HspAI GCGC 1 cut(s) 74
Kzo9I GATC 1 cut(s) 46
LmnI GCTCC 3 cut(s) 58, 69, 193
LpnPI CCDG 6 cut(s) 62, 134, 161, 252, 281, 289
Lsp1109I GCAGC 6 cut(s) 48, 75, 83, 172, 194, 296
LweI GCATC 1 cut(s) 384
MaeII ACGT 1 cut(s) 132
MalI GATC 1 cut(s) 48
MbiI CCGCTC 1 cut(s) 416
MboI GATC 1 cut(s) 46
MboII GAAGA 9 cut(s) 31, 37, 53, 306, 309, 312, 315, 318, 383
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 2 cut(s) 202, 208
MlyI GAGTC 2 cut(s) 13, 101
MnlI CCTC 9 cut(s) 24, 37, 49, 164, 201, 266, 307, 322, 448
MspA1I CMGCKG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
MwoI GCNNNNNNNGC 5 cut(s) 166, 224, 281, 293, 410
NdeII GATC 1 cut(s) 46
NlaIII CATG 1 cut(s) 334
NlaIV GGNNCC 1 cut(s) 237
PceI AGGCCT 1 cut(s) 296
PfeI GAWTC 1 cut(s) 279
PkrI GCNGC 7 cut(s) 63, 73, 90, 184, 187, 286, 415
PleI GAGTC 2 cut(s) 12, 101
PpsI GAGTC 2 cut(s) 12, 101
Psp124BI GAGCTC 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 237
PspPI GGNCC 3 cut(s) 151, 235, 402
PvuII CAGCTG 1 cut(s) 185
SacI GAGCTC 1 cut(s) 246
SatI GCNGC 7 cut(s) 62, 72, 89, 183, 186, 285, 414
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 3 cut(s) 151, 235, 402
SchI GAGTC 2 cut(s) 13, 101
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 1 cut(s) 246
SetI ASST 9 cut(s) 63, 126, 135, 162, 187, 246, 270, 289, 393
SfaNI GCATC 1 cut(s) 384
SinI GGWCC 1 cut(s) 235
SmlI CTYRAG 2 cut(s) 155, 290
SmoI CTYRAG 2 cut(s) 155, 290
Sse9I AATT 2 cut(s) 202, 208
SseBI AGGCCT 1 cut(s) 296
SsiI CCGC 3 cut(s) 227, 273, 414
SstI GAGCTC 1 cut(s) 246
StuI AGGCCT 1 cut(s) 296
StyD4I CCNGG 1 cut(s) 147
StyI CCWWGG 1 cut(s) 405
TaiI ACGT 1 cut(s) 135
TaqI TCGA 2 cut(s) 7, 135
TasI AATT 2 cut(s) 202, 208
TauI GCSGC 1 cut(s) 416
TfiI GAWTC 1 cut(s) 279
TscAI CASTG 1 cut(s) 220
TseI GCWGC 6 cut(s) 61, 71, 88, 182, 185, 284
TspDTI ATGAA 2 cut(s) 384, 393
TspGWI ACGGA 2 cut(s) 53, 91
TspRI CASTG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 235
XmiI GTMKAC 1 cut(s) 105
ZraI GACGTC 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.