RLG00000005611

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0017172
Physical Location & Seq
Forward (+)
275845 .. 276336
492 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005611

Sequence Viewer

Length: 492 bp
ATGAATAGGAACAAAGGGAAGACGAAGACGAAGACGAAGAAAACGGAAAAGGATGAGGTTGAAGAGTTGCTCCAAGCAGCACAGGACGATATGCTGCTCGGTCTATCCGTAGACTCTCATATATCCCGCCTTTCTGACGTGGACCGCCGTTTCCAGGCCCTCAAACTAAAGTCTCCGACTCCACCTAAAGCTACCGATGCTAATTCCAGTGCGCCTGCTGTCACATCGATTCAAGTGGATGAAGAGCTCAAAGCAGTCCTCGGAGATGACCTGTCCACCAGATTCGCAGCTCTCAAGGCCTCATTGCCCATTCCCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCGATCATCCCCGCCAGCTCGGCATTGCACTCTGGCTACGACGACGACGACGCTGTTGATGAAGATGATGAAGTTGAAAAGTTGATACGGTGGGCCAAGGACGCTGCTCGCCTTGACCCTTCTCCACCCTCCGACGATGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

17.54

Weight (kDa)

4.65

Isoelectric Point (pI)

56.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24370
fragaria_vesca FvH4_4g37240
malus_domestica MD13G1002400.v1.1
prunus_persica Prupe.1G350000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0447031
rosa_laevigata RLG00000005611
rosa_multiflora Rmu_sc0014071.1_g000008 Rmu_sc0019356.1_g000003
rosa_roxburghii Rroxscaffold_5G00387350
rosa_rugosa Rorug04G0377200
rosa_samantha Rh4BG447700 Rh4CG464800
rosa_wichuraiana Rw4G037520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 111
AciI CCGC 3 cut(s) 127, 145, 357
AfiI CCNNNNNNNGG 1 cut(s) 154
AgsI TTSAA 3 cut(s) 62, 233, 422
AjiI CACGTC 1 cut(s) 139
AjnI CCWGG 1 cut(s) 153
AluBI AGCT 4 cut(s) 191, 247, 290, 363
AluI AGCT 4 cut(s) 191, 247, 290, 363
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 1 cut(s) 177
AoxI GGCC 3 cut(s) 156, 297, 438
ApeKI GCWGC 4 cut(s) 77, 94, 287, 449
AspLEI GCGC 1 cut(s) 214
AspS9I GGNCC 3 cut(s) 142, 157, 438
AvaII GGWCC 1 cut(s) 142
BanII GRGCYC 1 cut(s) 249
BbsI GAAGAC 3 cut(s) 26, 32, 38
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 4 cut(s) 81, 89, 299, 436
BceAI ACGGC 1 cut(s) 132
BciT130I CCWGG 1 cut(s) 155
BcoDI GTCTC 1 cut(s) 177
BglI GCCNNNNNGGC 1 cut(s) 365
BisI GCNGC 4 cut(s) 78, 95, 288, 450
BlsI GCNGC 4 cut(s) 79, 96, 289, 451
Bme1390I CCNGG 1 cut(s) 155
Bme18I GGWCC 1 cut(s) 142
BmgBI CACGTC 1 cut(s) 139
BmgT120I GGNCC 3 cut(s) 142, 157, 438
BmrFI CCNGG 1 cut(s) 155
BmsI GCATC 1 cut(s) 187
BpiI GAAGAC 3 cut(s) 26, 32, 38
BpuEI CTTGAG 1 cut(s) 278
Bsa29I ATCGAT 1 cut(s) 227
BsaJI CCNNGG 2 cut(s) 259, 441
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse1I ACTGG 1 cut(s) 207
Bse3DI GCAATG 2 cut(s) 302, 368
BseBI CCWGG 1 cut(s) 155
BseCI ATCGAT 1 cut(s) 227
BseDI CCNNGG 2 cut(s) 259, 441
BseGI GGATG 3 cut(s) 58, 244, 351
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMI GCAATG 2 cut(s) 302, 368
BseNI ACTGG 1 cut(s) 207
BseRI GAGGAG 2 cut(s) 307, 310
BseXI GCAGC 4 cut(s) 81, 89, 299, 436
BshFI GGCC 3 cut(s) 158, 299, 440
BshVI ATCGAT 1 cut(s) 227
BsiHKAI GWGCWC 1 cut(s) 249
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 1 cut(s) 177
BsnI GGCC 3 cut(s) 158, 299, 440
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 1 cut(s) 348
BspACI CCGC 3 cut(s) 127, 145, 357
BspANI GGCC 3 cut(s) 158, 299, 440
BspDI ATCGAT 1 cut(s) 227
BspQI GCTCTTC 1 cut(s) 237
BsrDI GCAATG 2 cut(s) 302, 368
BsrI ACTGG 1 cut(s) 207
BssECI CCNNGG 2 cut(s) 259, 441
BssMI GATC 1 cut(s) 348
BssT1I CCWWGG 1 cut(s) 441
Bst2UI CCWGG 1 cut(s) 155
Bst4CI ACNGT 1 cut(s) 435
Bst6I CTCTTC 3 cut(s) 57, 237, 328
BstC8I GCNNGC 3 cut(s) 216, 361, 454
BstF5I GGATG 3 cut(s) 58, 244, 351
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 1 cut(s) 351
BstMAI GTCTC 1 cut(s) 177
BstMBI GATC 1 cut(s) 348
BstMWI GCNNNNNNNGC 4 cut(s) 197, 296, 365, 446
BstNI CCWGG 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 153
BstV1I GCAGC 4 cut(s) 81, 89, 299, 436
BstV2I GAAGAC 3 cut(s) 26, 32, 38
Bsu15I ATCGAT 1 cut(s) 227
BsuRI GGCC 3 cut(s) 158, 299, 440
BsuTUI ATCGAT 1 cut(s) 227
BtrI CACGTC 1 cut(s) 139
BtsCI GGATG 3 cut(s) 58, 244, 351
BtsIMutI CAGTG 1 cut(s) 214
Cac8I GCNNGC 3 cut(s) 216, 361, 454
CfoI GCGC 1 cut(s) 214
Cfr13I GGNCC 3 cut(s) 142, 157, 438
ClaI ATCGAT 1 cut(s) 227
CseI GACGC 2 cut(s) 404, 455
CviJI RGCY 8 cut(s) 158, 191, 247, 290, 299, 363, 381, 440
CviKI_1 RGCY 8 cut(s) 158, 191, 247, 290, 299, 363, 381, 440
DpnI GATC 1 cut(s) 350
DpnII GATC 1 cut(s) 348
Eam1104I CTCTTC 3 cut(s) 57, 237, 328
EarI CTCTTC 3 cut(s) 57, 237, 328
Ecl136II GAGCTC 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 441
Eco147I AGGCCT 1 cut(s) 299
Eco24I GRGCYC 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 142
Eco53kI GAGCTC 1 cut(s) 247
EcoICRI GAGCTC 1 cut(s) 247
EcoO109I RGGNCCY 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 153
EcoT14I CCWWGG 1 cut(s) 441
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 441
FaiI YATR 3 cut(s) 92, 120, 122
FauI CCCGC 2 cut(s) 134, 364
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 4 cut(s) 78, 95, 288, 450
FokI GGATG 3 cut(s) 65, 251, 338
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 4 cut(s) 78, 95, 288, 450
GlaI GCGC 1 cut(s) 213
GluI GCNGC 4 cut(s) 78, 95, 288, 450
HaeIII GGCC 3 cut(s) 158, 299, 440
HgaI GACGC 2 cut(s) 404, 455
HhaI GCGC 1 cut(s) 214
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HinfI GANTC 4 cut(s) 113, 178, 229, 282
Hpy166II GTNNAC 3 cut(s) 112, 142, 276
Hpy188I TCNGA 4 cut(s) 136, 177, 263, 478
Hpy8I GTNNAC 3 cut(s) 112, 142, 276
Hpy99I CGWCG 5 cut(s) 389, 392, 395, 398, 482
HpyAV CCTTC 1 cut(s) 474
HpyCH4III ACNGT 1 cut(s) 435
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 1 cut(s) 373
HpyF10VI GCNNNNNNNGC 4 cut(s) 197, 296, 365, 446
HpySE526I ACGT 1 cut(s) 138
HspAI GCGC 1 cut(s) 212
Kzo9I GATC 1 cut(s) 348
LguI GCTCTTC 1 cut(s) 237
LmnI GCTCC 1 cut(s) 75
LpnPI CCDG 9 cut(s) 68, 140, 167, 220, 228, 284, 292, 363, 373
Lsp1109I GCAGC 4 cut(s) 81, 89, 299, 436
LweI GCATC 1 cut(s) 187
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 1 cut(s) 220
MalI GATC 1 cut(s) 350
MboI GATC 1 cut(s) 348
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 1 cut(s) 202
MlyI GAGTC 2 cut(s) 107, 172
MmeI TCCRAC 1 cut(s) 200
MnlI CCTC 8 cut(s) 49, 170, 269, 310, 325, 328, 331, 484
MspR9I CCNGG 1 cut(s) 155
MvaI CCWGG 1 cut(s) 155
MwoI GCNNNNNNNGC 4 cut(s) 197, 296, 365, 446
NdeII GATC 1 cut(s) 348
NmeAIII GCCGAG 1 cut(s) 344
NmuCI GTSAC 1 cut(s) 220
PceI AGGCCT 1 cut(s) 299
PciSI GCTCTTC 1 cut(s) 237
PcsI WCGNNNNNNNCGW 2 cut(s) 105, 390
PfeI GAWTC 2 cut(s) 229, 282
PkrI GCNGC 4 cut(s) 79, 96, 289, 451
PleI GAGTC 2 cut(s) 107, 172
PpsI GAGTC 2 cut(s) 107, 172
Psp124BI GAGCTC 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 153
PspGI CCWGG 1 cut(s) 153
PspPI GGNCC 3 cut(s) 142, 157, 438
SacI GAGCTC 1 cut(s) 249
SapI GCTCTTC 1 cut(s) 237
SatI GCNGC 4 cut(s) 78, 95, 288, 450
Sau3AI GATC 1 cut(s) 348
Sau96I GGNCC 3 cut(s) 142, 157, 438
SchI GAGTC 2 cut(s) 107, 172
ScrFI CCNGG 1 cut(s) 155
SduI GDGCHC 1 cut(s) 249
SetI ASST 8 cut(s) 60, 141, 187, 193, 249, 273, 292, 365
SfaNI GCATC 1 cut(s) 187
SinI GGWCC 1 cut(s) 142
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 1 cut(s) 202
SseBI AGGCCT 1 cut(s) 299
SsiI CCGC 3 cut(s) 127, 145, 357
SstI GAGCTC 1 cut(s) 249
StuI AGGCCT 1 cut(s) 299
StyD4I CCNGG 1 cut(s) 153
StyI CCWWGG 1 cut(s) 441
TaaI ACNGT 1 cut(s) 435
TaiI ACGT 1 cut(s) 141
TaqI TCGA 2 cut(s) 227, 347
TaqII GACCGA 1 cut(s) 89
TasI AATT 1 cut(s) 202
TfiI GAWTC 2 cut(s) 229, 282
TscAI CASTG 1 cut(s) 214
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 4 cut(s) 77, 94, 287, 449
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 4 cut(s) 17, 255, 420, 429
TspGWI ACGGA 2 cut(s) 59, 97
TspRI CASTG 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 142
XmiI GTMKAC 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.