Rh4BG447700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0017172
Physical Location & Seq
Reverse (-)
58614085 .. 58614468
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG447700.1

Sequence Viewer

Length: 384 bp
ATGCTGCTCGGTCTATCCGTAGACTCTCACATATCCCGCCTTTCTGACGTGGACCGCCGTTTCCAGGCCCTCAAACTCAAGTCTCCGACTCCACCTAAAGTTGCCGATGCTAATTCCAGTGCGCCTGCTGTCACATCGATTCAAGTGGATGAAGAGCTCAAAGCAGTCCTCGGAGATGACCTGTCCACCAGATTCGCAGCTCTCAAGGCCTCAGTGCCCATGCCCTCCTCCTCTTCTTCTTCCATCATCGCCGCCAGCTCGGCATTGCACGCTGACTACGACGACGACGACGACGACGCTGTTGATGAAGTTGAAAAGTTGATACGTTGGGCCAAGGACGCCGCTCGCCTTGACCCTTCTCCACCCTCCGACGATGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

13.53

Weight (kDa)

4.38

Isoelectric Point (pI)

51.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24370
fragaria_vesca FvH4_4g37240
malus_domestica MD13G1002400.v1.1
prunus_persica Prupe.1G350000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0447031
rosa_laevigata RLG00000005611
rosa_multiflora Rmu_sc0014071.1_g000008 Rmu_sc0019356.1_g000003
rosa_roxburghii Rroxscaffold_5G00387350
rosa_rugosa Rorug04G0377200
rosa_samantha Rh4BG447700 Rh4CG464800
rosa_wichuraiana Rw4G037520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 344
AccI GTMKAC 1 cut(s) 21
AciI CCGC 4 cut(s) 37, 55, 252, 342
AcyI GRCGYC 1 cut(s) 339
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 2 cut(s) 143, 314
AjiI CACGTC 1 cut(s) 49
AjnI CCWGG 1 cut(s) 63
AluBI AGCT 3 cut(s) 157, 200, 258
AluI AGCT 3 cut(s) 157, 200, 258
Alw21I GWGCWC 1 cut(s) 159
Alw26I GTCTC 1 cut(s) 87
AoxI GGCC 3 cut(s) 66, 207, 330
ApeKI GCWGC 2 cut(s) 4, 197
AspLEI GCGC 1 cut(s) 124
AspS9I GGNCC 3 cut(s) 52, 67, 330
AvaII GGWCC 1 cut(s) 52
BaeGI GKGCMC 1 cut(s) 219
BanII GRGCYC 1 cut(s) 159
Bbv12I GWGCWC 1 cut(s) 159
BbvI GCAGC 1 cut(s) 209
BccI CCATC 1 cut(s) 251
BceAI ACGGC 1 cut(s) 42
BciT130I CCWGG 1 cut(s) 65
BcoDI GTCTC 1 cut(s) 87
BglI GCCNNNNNGGC 1 cut(s) 260
BisI GCNGC 4 cut(s) 5, 198, 252, 342
BlsI GCNGC 4 cut(s) 6, 199, 253, 343
Bme1390I CCNGG 1 cut(s) 65
Bme18I GGWCC 1 cut(s) 52
BmgBI CACGTC 1 cut(s) 49
BmgT120I GGNCC 3 cut(s) 52, 67, 330
BmrFI CCNGG 1 cut(s) 65
BmsI GCATC 1 cut(s) 97
BpuEI CTTGAG 2 cut(s) 62, 188
Bsa29I ATCGAT 1 cut(s) 137
BsaHI GRCGYC 1 cut(s) 339
BsaJI CCNNGG 2 cut(s) 169, 333
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 117
Bse3DI GCAATG 1 cut(s) 263
BseBI CCWGG 1 cut(s) 65
BseCI ATCGAT 1 cut(s) 137
BseDI CCNNGG 2 cut(s) 169, 333
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMI GCAATG 1 cut(s) 263
BseMII CTCAG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 117
BseRI GAGGAG 2 cut(s) 217, 220
BseSI GKGCMC 1 cut(s) 219
BseXI GCAGC 1 cut(s) 209
BshFI GGCC 3 cut(s) 68, 209, 332
BshVI ATCGAT 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 159
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 87
BsnI GGCC 3 cut(s) 68, 209, 332
Bsp1286I GDGCHC 2 cut(s) 159, 219
BspACI CCGC 4 cut(s) 37, 55, 252, 342
BspANI GGCC 3 cut(s) 68, 209, 332
BspCNI CTCAG 1 cut(s) 224
BspDI ATCGAT 1 cut(s) 137
BspQI GCTCTTC 1 cut(s) 147
BsrBI CCGCTC 1 cut(s) 344
BsrDI GCAATG 1 cut(s) 263
BsrI ACTGG 1 cut(s) 117
BssECI CCNNGG 2 cut(s) 169, 333
BssNI GRCGYC 1 cut(s) 339
BssT1I CCWWGG 1 cut(s) 333
Bst2UI CCWGG 1 cut(s) 65
Bst6I CTCTTC 2 cut(s) 147, 238
BstACI GRCGYC 1 cut(s) 339
BstC8I GCNNGC 4 cut(s) 126, 256, 270, 346
BstDEI CTNAG 1 cut(s) 211
BstF5I GGATG 1 cut(s) 154
BstHHI GCGC 1 cut(s) 124
BstMAI GTCTC 1 cut(s) 87
BstMWI GCNNNNNNNGC 4 cut(s) 206, 260, 269, 338
BstNI CCWGG 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 63
BstSLI GKGCMC 1 cut(s) 219
BstV1I GCAGC 1 cut(s) 209
Bsu15I ATCGAT 1 cut(s) 137
BsuRI GGCC 3 cut(s) 68, 209, 332
BsuTUI ATCGAT 1 cut(s) 137
BtgZI GCGATG 1 cut(s) 232
BtrI CACGTC 1 cut(s) 49
BtsCI GGATG 1 cut(s) 154
BtsIMutI CAGTG 2 cut(s) 124, 219
Cac8I GCNNGC 4 cut(s) 126, 256, 270, 346
CfoI GCGC 1 cut(s) 124
Cfr13I GGNCC 3 cut(s) 52, 67, 330
ClaI ATCGAT 1 cut(s) 137
CseI GACGC 2 cut(s) 305, 347
CviAII CATG 1 cut(s) 220
CviJI RGCY 6 cut(s) 68, 157, 200, 209, 258, 332
CviKI_1 RGCY 6 cut(s) 68, 157, 200, 209, 258, 332
DdeI CTNAG 1 cut(s) 211
Eam1104I CTCTTC 2 cut(s) 147, 238
EarI CTCTTC 2 cut(s) 147, 238
Ecl136II GAGCTC 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 333
Eco147I AGGCCT 1 cut(s) 209
Eco24I GRGCYC 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 52
Eco53kI GAGCTC 1 cut(s) 157
EcoICRI GAGCTC 1 cut(s) 157
EcoO109I RGGNCCY 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 63
EcoT14I CCWWGG 1 cut(s) 333
EcoT38I GRGCYC 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 333
FaeI CATG 1 cut(s) 223
FaiI YATR 2 cut(s) 32, 221
FatI CATG 1 cut(s) 219
FauI CCCGC 1 cut(s) 44
FblI GTMKAC 1 cut(s) 21
Fnu4HI GCNGC 4 cut(s) 5, 198, 252, 342
FokI GGATG 1 cut(s) 161
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 4 cut(s) 5, 198, 252, 342
GlaI GCGC 1 cut(s) 123
GluI GCNGC 4 cut(s) 5, 198, 252, 342
HaeIII GGCC 3 cut(s) 68, 209, 332
HgaI GACGC 2 cut(s) 305, 347
HhaI GCGC 1 cut(s) 124
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 1 cut(s) 223
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HinfI GANTC 4 cut(s) 23, 88, 139, 192
Hpy166II GTNNAC 3 cut(s) 22, 52, 186
Hpy188I TCNGA 4 cut(s) 46, 87, 173, 370
Hpy8I GTNNAC 3 cut(s) 22, 52, 186
Hpy99I CGWCG 7 cut(s) 284, 287, 290, 293, 296, 299, 374
HpyAV CCTTC 1 cut(s) 366
HpyCH4IV ACGT 2 cut(s) 48, 325
HpyCH4V TGCA 1 cut(s) 268
HpyF10VI GCNNNNNNNGC 4 cut(s) 206, 260, 269, 338
HpyF3I CTNAG 1 cut(s) 211
HpySE526I ACGT 2 cut(s) 48, 325
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 1 cut(s) 223
HspAI GCGC 1 cut(s) 122
LguI GCTCTTC 1 cut(s) 147
LpnPI CCDG 7 cut(s) 50, 77, 130, 138, 194, 202, 268
Lsp1109I GCAGC 1 cut(s) 209
LweI GCATC 1 cut(s) 97
MaeII ACGT 2 cut(s) 48, 325
MaeIII GTNAC 1 cut(s) 130
MbiI CCGCTC 1 cut(s) 344
MboII GAAGA 4 cut(s) 164, 225, 228, 231
MhlI GDGCHC 2 cut(s) 159, 219
MluCI AATT 1 cut(s) 112
MlyI GAGTC 2 cut(s) 17, 82
MmeI TCCRAC 1 cut(s) 110
MnlI CCTC 7 cut(s) 80, 179, 220, 235, 238, 241, 376
MspR9I CCNGG 1 cut(s) 65
MvaI CCWGG 1 cut(s) 65
MwoI GCNNNNNNNGC 4 cut(s) 206, 260, 269, 338
NlaIII CATG 1 cut(s) 223
NmeAIII GCCGAG 1 cut(s) 239
NmuCI GTSAC 1 cut(s) 130
PceI AGGCCT 1 cut(s) 209
PciSI GCTCTTC 1 cut(s) 147
PcsI WCGNNNNNNNCGW 5 cut(s) 15, 276, 285, 288, 291
PfeI GAWTC 2 cut(s) 139, 192
PkrI GCNGC 4 cut(s) 6, 199, 253, 343
PleI GAGTC 2 cut(s) 17, 82
PpsI GAGTC 2 cut(s) 17, 82
Psp124BI GAGCTC 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 63
PspGI CCWGG 1 cut(s) 63
PspPI GGNCC 3 cut(s) 52, 67, 330
SacI GAGCTC 1 cut(s) 159
SapI GCTCTTC 1 cut(s) 147
SatI GCNGC 4 cut(s) 5, 198, 252, 342
Sau96I GGNCC 3 cut(s) 52, 67, 330
SchI GAGTC 2 cut(s) 17, 82
ScrFI CCNGG 1 cut(s) 65
SduI GDGCHC 2 cut(s) 159, 219
SetI ASST 7 cut(s) 51, 97, 159, 183, 202, 260, 328
SfaNI GCATC 1 cut(s) 97
SinI GGWCC 1 cut(s) 52
SmlI CTYRAG 2 cut(s) 77, 203
SmoI CTYRAG 2 cut(s) 77, 203
Sse9I AATT 1 cut(s) 112
SseBI AGGCCT 1 cut(s) 209
SsiI CCGC 4 cut(s) 37, 55, 252, 342
SstI GAGCTC 1 cut(s) 159
StuI AGGCCT 1 cut(s) 209
StyD4I CCNGG 1 cut(s) 63
StyI CCWWGG 1 cut(s) 333
TaiI ACGT 2 cut(s) 51, 328
TaqI TCGA 1 cut(s) 137
TasI AATT 1 cut(s) 112
TauI GCSGC 2 cut(s) 254, 344
TfiI GAWTC 2 cut(s) 139, 192
TscAI CASTG 2 cut(s) 124, 219
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 2 cut(s) 4, 197
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 2 cut(s) 165, 321
TspGWI ACGGA 1 cut(s) 7
TspRI CASTG 2 cut(s) 124, 219
VpaK11BI GGWCC 1 cut(s) 52
XmiI GTMKAC 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.