Rorug04G0377200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0017172
Physical Location & Seq
Reverse (-)
54782112 .. 54787844
5733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0377200.1

Sequence Viewer

Length: 2385 bp
ATGGCTCCAGTCCTGAGCAGAAGCTTATCCACAGCCTCTCTTGCTTCACTTTCTTCCTTAACACTCAGAAACCCCAACAAGGTCTTGAACCTCAGAAGTGCCTTTGTGCCCCAAAATGGGCTCAGAAAGGGCTTTGCTTGCGGTGGTTTGAAGTGGAGCCTTGAGACCCAAAATAGGCAGGTCACTGTTCGCTGCGATGCGGCGGTCGCCGAGAAAGAGGTCGCCGATACGCCCGGTGAGGAATTCCAGTACCAAGCCGAGGTCAGTCGGCTAATGGATTTGATAGTGCACAGTCTATACAGCCACAAGGAGGTCTTCCTTAGAGAGCTTGTTAGTAATGCAAGTGATGCTTTGGACAAGTTGAGATTTTTGAGTGTGACTGAGCCCTCGCTGCTTGGAGATGCTGGTGAGCTACAGATACGCATCAAACCCGACCCCGAGAATGGGACTATCACTATAACGGATACTGGTATTGGGATGACGAAAGAGGAACTCATTGACTGCCTTGGTACCATTGCTCAGAGTGGTACTTCAAAATTCTTGACTGCTCTGAAGGAAAATAAGGATCTTGGTGCAGACAATGGTTTGATTGGTCAATTTGGTGTTGGGTTCTATTCTGCTTTTCTTGTTGCTGACAAGGTAGTTGTTTCTACAAAAAGCCCAAAATCAGACAAGCAATATGTCTGGGAATCAGCTGCTGAGAGTAGCTCTTATGTGATAAGGGAAGAAACTGATCCAGAAAATATCATTAGCCGTGGGACGCAGATCAAACTATATTTAAGGCCGGATGACAAGTATGAATTCTCAGAGCCTGCCCGGATCCAGAGTTTGGTGAAGAATTACTCGCAATTTGTTTCTTTCCCCATCTACACATGGCAAGAAAAGTCAAGGACTGTTGAGGTTGAAGAGGAGGAGGAAGAACCAAAGGAAGGAGAAGAACCAAAGCCAGAGGGTGAGAAGAAAAAGAAGACTATAACTGAGAAGTATTGGGATTGGGAATTAGCCAATGAAACAAAGCCTATATGGATGCGGAGTTCAAAGGAAGTAGAAAAAGATGAGTACAATGAATTCTACAAGAAAACATTTAATGAGTTCTTGGATCCACTTGCTTACACTCACTTCACCACTGAGGGTGAGGTGGAATTCAGGAGTGTTCTTTATATTCCTGGGATGGCGCCAATGAACAATGAGGATATAGCAAATCCAAAAACAAAGAACATTCGGTTATATGTGAAGAGGGTCTTTATCTCAGATGATTTTGATGGTGAACTGTTTCCAAGATACCTGAGCTTTGTAAAGGGTGTGGTGGATTCAAATGACCTTCCTCTTAACGTTTCCCGAGAGATTCTTCAAGAAAGTCGAATTGTAAGAATTATGAGAAAGAGACTTGTAAGGAAAACATTTGACATGATTCAAGAACTCTCCGAAAGTGAAAATAAAGAGGATTACAAGAAGTTATGGGAGAACTTCGGCAGGTTTCTGAAGTTGGGTTGTATTGAGGACTCTGGAAATCACAAGCGCATAACACCTCTGTTGCGGTTTTATACTTCAAAAAGTGAGGAAGAACTGACGAGTTTAGATGAATATGTTGAAAACATGCCTGAGACCCAGAATGCCATCTATTACTTGGCAACAGACAGTCTGAAAAGTGCAAGAAGTGCTCCATTCTTGGAAAAGTTGGTTCAGAAAGATATTGAGGTTTTGTATTTAGTTGAACCTATTGATGAAGTGGCCATCCAGAACCTACAAACCTACAAAGAGAAGAAGTTTGTGGACATTAGCAAGGAAGATTTGGAACTTGGTGATGAGGATGAGGTCAAGGACAGGGAGACTAAACAAGAATACACACTGCTCTGTGATTGGATAAAGCAACAACTTGGTGATCAGGTTGCAAAAGTCCAAGTCTCGAAGCGTCTAAGCTCATCTCCTTGTGTTCTTGTTTCGGGCAAGTTTGGATGGTCTGCTAATATGGAAAGATTGATGAAAGCCCAGGCACTTGGAGATACTTCAAGTTTGGAGTTCATGAGGGGCAGGAGAATAATGGAAATTAACCCAGATCATCCTATCATTAAGGACCTAAATGCTGCTTGCAAGAACGCCCCTGAGAGCACTGATGCCAAGAGAGCTGTAGCCCTCTTGTTTGACACAGCATTGATCTCCAGTGGATTCACTCCCGACAGCCCAGCTGAGTTGGGAAACAAGATATATGAGATGATGGCAATGGCCCTTGGAGGAAGATGGGGTAGACTGGAAGATGAGGAGGCAGAGGGAAAGGCAGCAAATGACAATGCCGCAGAAACTGATGCAAGCGCTGGTGAAGCCTCTGAAGCAGAAGTAGTTGAAGCATCAGAAGTGAGGGCAGAGAGCGATCCATGGAGTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

794

Amino Acids

89.87

Weight (kDa)

4.86

Isoelectric Point (pI)

44.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HATPase_c PF02518 105 - 207 1e-06 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c_3 PF13589 107 - 240 6.7e-09 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HSP90 PF00183 267 - 767 2.1e-196 Hsp90 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24370
fragaria_vesca FvH4_4g37240
malus_domestica MD13G1002400.v1.1
prunus_persica Prupe.1G350000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0447031
rosa_laevigata RLG00000005611
rosa_multiflora Rmu_sc0014071.1_g000008 Rmu_sc0019356.1_g000003
rosa_roxburghii Rroxscaffold_5G00387350
rosa_rugosa Rorug04G0377200
rosa_samantha Rh4BG447700 Rh4CG464800
rosa_wichuraiana Rw4G037520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 169, 1464
Acc65I GGTACC 1 cut(s) 509
AccB1I GGYRCC 2 cut(s) 509, 1174
AccB7I CCANNNNNTGG 1 cut(s) 829
AccI GTMKAC 1 cut(s) 2245
AciI CCGC 6 cut(s) 141, 200, 203, 1030, 1537, 2292
AclI AACGTT 1 cut(s) 1332
AclWI GGATC 7 cut(s) 573, 728, 814, 827, 1094, 1107, 2363
AcoI YGGCCR 1 cut(s) 1731
AcsI RAATTY 5 cut(s) 242, 536, 800, 1067, 1142
AcuI CTGAAG 3 cut(s) 572, 1502, 2346
AcyI GRCGYC 1 cut(s) 1175
AfaI GTAC 4 cut(s) 251, 511, 529, 1061
AfeI AGCGCT 1 cut(s) 2311
AjnI CCWGG 2 cut(s) 1165, 1989
AloI GAACNNNNNNTCC 2 cut(s) 1018, 1050
AluBI AGCT 9 cut(s) 24, 328, 412, 695, 708, 1290, 1920, 2126, 2186
AluI AGCT 9 cut(s) 24, 328, 412, 695, 708, 1290, 1920, 2126, 2186
Alw21I GWGCWC 3 cut(s) 291, 1663, 2111
Alw26I GTCTC 5 cut(s) 158, 1378, 1598, 1823, 1909
Alw44I GTGCAC 1 cut(s) 287
AlwI GGATC 7 cut(s) 573, 728, 814, 827, 1094, 1107, 2363
AlwNI CAGNNNCTG 3 cut(s) 698, 812, 2300
Ama87I CYCGRG 2 cut(s) 437, 1338
Aor51HI AGCGCT 1 cut(s) 2311
AoxI GGCC 3 cut(s) 782, 1731, 2223
ApaLI GTGCAC 1 cut(s) 287
ApeKI GCWGC 5 cut(s) 192, 391, 695, 2084, 2276
ApoI RAATTY 5 cut(s) 242, 536, 800, 1067, 1142
Asp700I GAANNNNTTC 1 cut(s) 1272
Asp718I GGTACC 1 cut(s) 509
AspLEI GCGC 3 cut(s) 1177, 1521, 2312
AspS9I GGNCC 2 cut(s) 2074, 2224
AsuC2I CCSGG 2 cut(s) 234, 817
AvaI CYCGRG 2 cut(s) 437, 1338
AvaII GGWCC 1 cut(s) 2074
BaeGI GKGCMC 2 cut(s) 111, 291
BalI TGGCCA 1 cut(s) 1733
BamHI GGATCC 2 cut(s) 819, 1099
BanI GGYRCC 2 cut(s) 509, 1174
BanII GRGCYC 2 cut(s) 123, 387
BbsI GAAGAC 2 cut(s) 307, 974
Bbv12I GWGCWC 3 cut(s) 291, 1663, 2111
BbvI GCAGC 5 cut(s) 179, 378, 682, 2071, 2288
BccI CCATC 8 cut(s) 872, 1165, 1256, 1625, 1742, 1950, 2209, 2232
BceAI ACGGC 1 cut(s) 738
BciT130I CCWGG 2 cut(s) 1167, 1991
BciVI GTATCC 1 cut(s) 457
BclI TGATCA 1 cut(s) 1882
BcnI CCSGG 2 cut(s) 234, 817
BcoDI GTCTC 5 cut(s) 158, 1378, 1598, 1823, 1909
BfmI CTRYAG 2 cut(s) 413, 2127
BfoI RGCGCY 2 cut(s) 1178, 2313
BfuAI ACCTGC 2 cut(s) 169, 1464
BfuI GTATCC 1 cut(s) 457
BisI GCNGC 7 cut(s) 193, 201, 392, 696, 2085, 2277, 2292
BlsI GCNGC 7 cut(s) 194, 202, 393, 697, 2086, 2278, 2293
Bme1390I CCNGG 4 cut(s) 234, 817, 1167, 1991
Bme18I GGWCC 1 cut(s) 2074
BmeT110I CYCGRG 2 cut(s) 437, 1338
BmgT120I GGNCC 2 cut(s) 2074, 2224
BmiI GGNNCC 6 cut(s) 6, 158, 511, 821, 1101, 1176
BmrFI CCNGG 4 cut(s) 234, 817, 1167, 1991
BmsI GCATC 8 cut(s) 187, 337, 391, 432, 1017, 2104, 2293, 2354
BpiI GAAGAC 2 cut(s) 307, 974
BplI GAGNNNNNCTC 2 cut(s) 692, 724
BpmI CTGGAG 1 cut(s) 2143
Bpu10I CCTNAGC 2 cut(s) 14, 1286
BpuEI CTTGAG 1 cut(s) 182
BpuMI CCSGG 2 cut(s) 234, 817
BsaBI GATNNNNATC 1 cut(s) 422
BsaHI GRCGYC 1 cut(s) 1175
BsaI GGTCTC 2 cut(s) 158, 1598
BsaJI CCNNGG 7 cut(s) 258, 505, 754, 1166, 1989, 2227, 2372
Bse1I ACTGG 5 cut(s) 8, 247, 472, 2160, 2253
Bse3DI GCAATG 2 cut(s) 513, 2226
Bse8I GATNNNNATC 1 cut(s) 422
BseBI CCWGG 2 cut(s) 1167, 1991
BseDI CCNNGG 7 cut(s) 258, 505, 754, 1166, 1989, 2227, 2372
BseGI GGATG 8 cut(s) 483, 793, 1032, 1176, 1734, 1816, 1961, 2059
BseJI GATNNNNATC 1 cut(s) 422
BseMI GCAATG 2 cut(s) 513, 2226
BseNI ACTGG 5 cut(s) 8, 247, 472, 2160, 2253
BseRI GAGGAG 3 cut(s) 923, 926, 2273
BseSI GKGCMC 2 cut(s) 111, 291
BseXI GCAGC 5 cut(s) 179, 378, 682, 2071, 2288
BseYI CCCAGC 1 cut(s) 2182
BsgI GTGCAG 1 cut(s) 594
Bsh1285I CGRYCG 1 cut(s) 207
BshFI GGCC 3 cut(s) 784, 1733, 2225
BshNI GGYRCC 2 cut(s) 509, 1174
BsiEI CGRYCG 1 cut(s) 207
BsiHKAI GWGCWC 3 cut(s) 291, 1663, 2111
BsiHKCI CYCGRG 2 cut(s) 437, 1338
BsiSI CCGG 3 cut(s) 234, 785, 817
BslFI GGGAC 2 cut(s) 460, 772
BsmAI GTCTC 5 cut(s) 158, 1378, 1598, 1823, 1909
BsmFI GGGAC 2 cut(s) 460, 772
BsmI GAATGC 1 cut(s) 1618
BsnI GGCC 3 cut(s) 784, 1733, 2225
Bso31I GGTCTC 2 cut(s) 158, 1598
BsoBI CYCGRG 2 cut(s) 437, 1338
Bsp1286I GDGCHC 6 cut(s) 111, 123, 291, 387, 1663, 2111
Bsp143I GATC 9 cut(s) 565, 733, 765, 819, 1099, 1882, 2056, 2154, 2368
Bsp19I CCATGG 1 cut(s) 2372
BspACI CCGC 6 cut(s) 141, 200, 203, 1030, 1537, 2292
BspANI GGCC 3 cut(s) 784, 1733, 2225
BspHI TCATGA 1 cut(s) 2022
BspLI GGNNCC 6 cut(s) 6, 158, 511, 821, 1101, 1176
BspMI ACCTGC 2 cut(s) 169, 1464
BspPI GGATC 7 cut(s) 573, 728, 814, 827, 1094, 1107, 2363
BspT107I GGYRCC 2 cut(s) 509, 1174
BspTNI GGTCTC 2 cut(s) 158, 1598
BsrDI GCAATG 2 cut(s) 513, 2226
BsrI ACTGG 5 cut(s) 8, 247, 472, 2160, 2253
BssECI CCNNGG 7 cut(s) 258, 505, 754, 1166, 1989, 2227, 2372
BssMI GATC 9 cut(s) 565, 733, 765, 819, 1099, 1882, 2056, 2154, 2368
BssNI GRCGYC 1 cut(s) 1175
BssT1I CCWWGG 3 cut(s) 505, 2227, 2372
Bst2UI CCWGG 2 cut(s) 1167, 1991
Bst4CI ACNGT 5 cut(s) 187, 293, 895, 1272, 1640
Bst6I CTCTTC 2 cut(s) 900, 1229
BstACI GRCGYC 1 cut(s) 1175
BstAPI GCANNNNNTGC 2 cut(s) 347, 1658
BstC8I GCNNGC 4 cut(s) 139, 813, 2089, 2308
BstDSI CCRYGG 2 cut(s) 754, 2372
BstF5I GGATG 8 cut(s) 483, 793, 1032, 1176, 1734, 1816, 1961, 2059
BstH2I RGCGCY 2 cut(s) 1178, 2313
BstHHI GCGC 3 cut(s) 1177, 1521, 2312
BstKTI GATC 9 cut(s) 568, 736, 768, 822, 1102, 1885, 2059, 2157, 2371
BstMAI GTCTC 5 cut(s) 158, 1378, 1598, 1823, 1909
BstMBI GATC 9 cut(s) 565, 733, 765, 819, 1099, 1882, 2056, 2154, 2368
BstMCI CGRYCG 1 cut(s) 207
BstMWI GCNNNNNNNGC 9 cut(s) 41, 138, 206, 347, 391, 1658, 2123, 2318, 2327
BstNI CCWGG 2 cut(s) 1167, 1991
BstNSI RCATGY 1 cut(s) 1600
BstSCI CCNGG 4 cut(s) 232, 815, 1165, 1989
BstSFI CTRYAG 2 cut(s) 413, 2127
BstSLI GKGCMC 2 cut(s) 111, 291
BstV1I GCAGC 5 cut(s) 179, 378, 682, 2071, 2288
BstV2I GAAGAC 2 cut(s) 307, 974
BstX2I RGATCY 3 cut(s) 565, 819, 1099
BstXI CCANNNNNNTGG 1 cut(s) 1997
BstYI RGATCY 3 cut(s) 565, 819, 1099
BsuI GTATCC 1 cut(s) 457
BsuRI GGCC 3 cut(s) 784, 1733, 2225
BtgI CCRYGG 2 cut(s) 754, 2372
BtgZI GCGATG 1 cut(s) 210
BtsCI GGATG 8 cut(s) 483, 793, 1032, 1176, 1734, 1816, 1961, 2059
BtsI GCAGTG 1 cut(s) 1847
BtsIMutI CAGTG 5 cut(s) 183, 1125, 1847, 2109, 2167
BveI ACCTGC 2 cut(s) 169, 1464
Cac8I GCNNGC 4 cut(s) 139, 813, 2089, 2308
CaiI CAGNNNCTG 3 cut(s) 698, 812, 2300
CciI TCATGA 1 cut(s) 2022
CfoI GCGC 3 cut(s) 1177, 1521, 2312
Cfr13I GGNCC 2 cut(s) 2074, 2224
CseI GACGC 2 cut(s) 769, 1901
Csp6I GTAC 4 cut(s) 250, 510, 528, 1060
CviAII CATG 5 cut(s) 873, 1408, 1597, 2023, 2373
CviQI GTAC 4 cut(s) 250, 510, 528, 1060
DinI GGCGCC 1 cut(s) 1176
DpnI GATC 9 cut(s) 567, 735, 767, 821, 1101, 1884, 2058, 2156, 2370
DpnII GATC 9 cut(s) 565, 733, 765, 819, 1099, 1882, 2056, 2154, 2368
EaeI YGGCCR 1 cut(s) 1731
Eam1104I CTCTTC 2 cut(s) 900, 1229
EarI CTCTTC 2 cut(s) 900, 1229
Eco130I CCWWGG 3 cut(s) 505, 2227, 2372
Eco24I GRGCYC 2 cut(s) 123, 387
Eco31I GGTCTC 2 cut(s) 158, 1598
Eco47I GGWCC 1 cut(s) 2074
Eco47III AGCGCT 1 cut(s) 2311
Eco57I CTGAAG 3 cut(s) 572, 1502, 2346
Eco88I CYCGRG 2 cut(s) 437, 1338
EcoO109I RGGNCCY 1 cut(s) 2074
EcoRI GAATTC 4 cut(s) 242, 800, 1067, 1142
EcoRII CCWGG 2 cut(s) 1165, 1989
EcoT14I CCWWGG 3 cut(s) 505, 2227, 2372
EcoT38I GRGCYC 2 cut(s) 123, 387
EgeI GGCGCC 1 cut(s) 1176
EheI GGCGCC 1 cut(s) 1176
ErhI CCWWGG 3 cut(s) 505, 2227, 2372
FaeI CATG 5 cut(s) 876, 1411, 1600, 2026, 2376
FalI AAGNNNNNCTT 6 cut(s) 299, 331, 334, 366, 1226, 1258
FaqI GGGAC 2 cut(s) 460, 772
FatI CATG 5 cut(s) 872, 1407, 1596, 2022, 2372
FbaI TGATCA 1 cut(s) 1882
FblI GTMKAC 1 cut(s) 2245
Fnu4HI GCNGC 7 cut(s) 193, 201, 392, 696, 2085, 2277, 2292
FokI GGATG 8 cut(s) 490, 800, 1039, 1183, 1721, 1823, 1968, 2046
FriOI GRGCYC 2 cut(s) 123, 387
Fsp4HI GCNGC 7 cut(s) 193, 201, 392, 696, 2085, 2277, 2292
GlaI GCGC 3 cut(s) 1176, 1520, 2311
GluI GCNGC 7 cut(s) 193, 201, 392, 696, 2085, 2277, 2292
GsaI CCCAGC 1 cut(s) 2186
GsuI CTGGAG 1 cut(s) 2143
HaeII RGCGCY 2 cut(s) 1178, 2313
HaeIII GGCC 3 cut(s) 784, 1733, 2225
HapII CCGG 3 cut(s) 234, 785, 817
HgaI GACGC 2 cut(s) 769, 1901
HhaI GCGC 3 cut(s) 1177, 1521, 2312
Hin1I GRCGYC 1 cut(s) 1175
Hin1II CATG 5 cut(s) 876, 1411, 1600, 2026, 2376
Hin6I GCGC 3 cut(s) 1175, 1519, 2310
HinP1I GCGC 3 cut(s) 1175, 1519, 2310
HindIII AAGCTT 1 cut(s) 22
HinfI GANTC 6 cut(s) 689, 1310, 1345, 1411, 1502, 2166
HpaII CCGG 3 cut(s) 234, 785, 817
Hpy166II GTNNAC 4 cut(s) 289, 1268, 1774, 2246
Hpy8I GTNNAC 4 cut(s) 289, 1268, 1774, 2246
HpyAV CCTTC 3 cut(s) 547, 923, 1331
HpyCH4III ACNGT 5 cut(s) 187, 293, 895, 1272, 1640
HpyCH4IV ACGT 1 cut(s) 1332
HpyCH4V TGCA 7 cut(s) 289, 341, 575, 1652, 1892, 2091, 2306
HpyF10VI GCNNNNNNNGC 9 cut(s) 41, 138, 206, 347, 391, 1658, 2123, 2318, 2327
HpySE526I ACGT 1 cut(s) 1332
Hsp92I GRCGYC 1 cut(s) 1175
Hsp92II CATG 5 cut(s) 876, 1411, 1600, 2026, 2376
HspAI GCGC 3 cut(s) 1175, 1519, 2310
KasI GGCGCC 1 cut(s) 1174
KpnI GGTACC 1 cut(s) 513
Ksp22I TGATCA 1 cut(s) 1882
Kzo9I GATC 9 cut(s) 565, 733, 765, 819, 1099, 1882, 2056, 2154, 2368
LmnI GCTCC 3 cut(s) 10, 156, 1666
Lsp1109I GCAGC 5 cut(s) 179, 378, 682, 2071, 2288
LweI GCATC 8 cut(s) 187, 337, 391, 432, 1017, 2104, 2293, 2354
MaeII ACGT 1 cut(s) 1332
MaeIII GTNAC 2 cut(s) 181, 376
MalI GATC 9 cut(s) 567, 735, 767, 821, 1101, 1884, 2058, 2156, 2370
MboI GATC 9 cut(s) 565, 733, 765, 819, 1099, 1882, 2056, 2154, 2368
MflI RGATCY 3 cut(s) 565, 819, 1099
MhlI GDGCHC 6 cut(s) 111, 123, 291, 387, 1663, 2111
MlsI TGGCCA 1 cut(s) 1733
MluNI TGGCCA 1 cut(s) 1733
Mly113I GGCGCC 1 cut(s) 1175
MlyI GAGTC 1 cut(s) 1496
Mox20I TGGCCA 1 cut(s) 1733
MroXI GAANNNNTTC 1 cut(s) 1272
MscI TGGCCA 1 cut(s) 1733
MseI TTAA 6 cut(s) 59, 779, 1086, 1329, 2049, 2070
Msp20I TGGCCA 1 cut(s) 1733
MspA1I CMGCKG 2 cut(s) 695, 2186
MspI CCGG 3 cut(s) 234, 785, 817
MspR9I CCNGG 4 cut(s) 234, 817, 1167, 1991
Mva1269I GAATGC 1 cut(s) 1618
MvaI CCWGG 2 cut(s) 1167, 1991
MwoI GCNNNNNNNGC 9 cut(s) 41, 138, 206, 347, 391, 1658, 2123, 2318, 2327
NarI GGCGCC 1 cut(s) 1175
NciI CCSGG 2 cut(s) 234, 817
NcoI CCATGG 1 cut(s) 2372
NdeII GATC 9 cut(s) 565, 733, 765, 819, 1099, 1882, 2056, 2154, 2368
NlaIII CATG 5 cut(s) 876, 1411, 1600, 2026, 2376
NlaIV GGNNCC 6 cut(s) 6, 158, 511, 821, 1101, 1176
NmeAIII GCCGAG 2 cut(s) 235, 283
NmuCI GTSAC 2 cut(s) 181, 376
NspI RCATGY 1 cut(s) 1600
PagI TCATGA 1 cut(s) 2022
PctI GAATGC 1 cut(s) 1618
PdmI GAANNNNTTC 1 cut(s) 1272
PfeI GAWTC 5 cut(s) 689, 1310, 1345, 1411, 2166
PflMI CCANNNNNTGG 1 cut(s) 829
PkrI GCNGC 7 cut(s) 194, 202, 393, 697, 2086, 2278, 2293
PleI GAGTC 1 cut(s) 1496
PluTI GGCGCC 1 cut(s) 1178
PpsI GAGTC 1 cut(s) 1496
PpuMI RGGWCCY 1 cut(s) 2074
Psp1406I AACGTT 1 cut(s) 1332
Psp5II RGGWCCY 1 cut(s) 2074
Psp6I CCWGG 2 cut(s) 1165, 1989
PspFI CCCAGC 1 cut(s) 2182
PspGI CCWGG 2 cut(s) 1165, 1989
PspN4I GGNNCC 6 cut(s) 6, 158, 511, 821, 1101, 1176
PspPI GGNCC 2 cut(s) 2074, 2224
PspPPI RGGWCCY 1 cut(s) 2074
PstNI CAGNNNCTG 3 cut(s) 698, 812, 2300
PsuI RGATCY 3 cut(s) 565, 819, 1099
PvuII CAGCTG 2 cut(s) 695, 2186
RsaI GTAC 4 cut(s) 251, 511, 529, 1061
RsaNI GTAC 4 cut(s) 250, 510, 528, 1060
SaqAI TTAA 6 cut(s) 59, 779, 1086, 1329, 2049, 2070
SatI GCNGC 7 cut(s) 193, 201, 392, 696, 2085, 2277, 2292
Sau3AI GATC 9 cut(s) 565, 733, 765, 819, 1099, 1882, 2056, 2154, 2368
Sau96I GGNCC 2 cut(s) 2074, 2224
SchI GAGTC 1 cut(s) 1496
ScrFI CCNGG 4 cut(s) 234, 817, 1167, 1991
SduI GDGCHC 6 cut(s) 111, 123, 291, 387, 1663, 2111
SfaNI GCATC 8 cut(s) 187, 337, 391, 432, 1017, 2104, 2293, 2354
SfcI CTRYAG 2 cut(s) 413, 2127
SfoI GGCGCC 1 cut(s) 1176
SinI GGWCC 1 cut(s) 2074
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
SsiI CCGC 6 cut(s) 141, 200, 203, 1030, 1537, 2292
SspDI GGCGCC 1 cut(s) 1174
StyD4I CCNGG 4 cut(s) 232, 815, 1165, 1989
StyI CCWWGG 3 cut(s) 505, 2227, 2372
TaaI ACNGT 5 cut(s) 187, 293, 895, 1272, 1640
TaiI ACGT 1 cut(s) 1335
TaqI TCGA 2 cut(s) 1360, 1907
TatI WGTACW 1 cut(s) 1059
TauI GCSGC 2 cut(s) 203, 2294
TfiI GAWTC 5 cut(s) 689, 1310, 1345, 1411, 2166
Tru1I TTAA 6 cut(s) 59, 779, 1086, 1329, 2049, 2070
Tru9I TTAA 6 cut(s) 59, 779, 1086, 1329, 2049, 2070
TscAI CASTG 5 cut(s) 190, 1132, 1854, 2116, 2167
TseFI GTSAC 2 cut(s) 181, 376
TseI GCWGC 5 cut(s) 192, 391, 695, 2084, 2276
Tsp45I GTSAC 2 cut(s) 181, 376
TspDTI ATGAA 8 cut(s) 813, 1023, 1080, 1196, 1596, 1740, 1997, 2011
TspGWI ACGGA 1 cut(s) 476
TspRI CASTG 5 cut(s) 190, 1132, 1854, 2116, 2167
Van91I CCANNNNNTGG 1 cut(s) 829
VneI GTGCAC 1 cut(s) 287
VpaK11BI GGWCC 1 cut(s) 2074
XapI RAATTY 5 cut(s) 242, 536, 800, 1067, 1142
XceI RCATGY 1 cut(s) 1600
XcmI CCANNNNNNNNNTGG 1 cut(s) 1624
XmiI GTMKAC 1 cut(s) 2245
XmnI GAANNNNTTC 1 cut(s) 1272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.