Rroxscaffold_5G00387350

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0017172
Physical Location & Seq
Reverse (-)
66029548 .. 66030033
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00387350.1

Sequence Viewer

Length: 486 bp
ATGAATAGGAACAAGGGGAAGACGAAGACGAAGAAAACGGAAAAGGATGAGGTTGAAGAGTTGCTCCAAGCAGCACAGGACGATATGCTGCTCGGTCTATCCGTAGACTCTCACATATCCCGCCTCTCTGACGTGGACCGCCGTTTCCAGGCCCTCAAACTCAAGTCTCCGACTCCACCTAAAGTTGCCGATGCTAATTCCAGTGCGCCTGCTGTCACATCGATTCAAGTGGATGATGAGCTCAAAGCAGTCCTCGGAGATGACCTGTCCACCAGATTCGCAGCTCTCAAGGCCTCATTGCCCATGCCCTCCTCCTCCTCCTCTTCTCGTTCTTCTTCTTCGATCATCGCCGCCAGCTCGGCATTGCACTCTGGCTACGACGACGACGACGCTGTTGATGAAGATGATGAAGTTGAAAAGTTGATACGGTGGGCCAAGGACGCCGCTCGCCTTGACCCTTCTCCACCCTCCGACGATGAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.36

Weight (kDa)

4.72

Isoelectric Point (pI)

54.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24370
fragaria_vesca FvH4_4g37240
malus_domestica MD13G1002400.v1.1
prunus_persica Prupe.1G350000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0447031
rosa_laevigata RLG00000005611
rosa_multiflora Rmu_sc0014071.1_g000008 Rmu_sc0019356.1_g000003
rosa_roxburghii Rroxscaffold_5G00387350
rosa_rugosa Rorug04G0377200
rosa_samantha Rh4BG447700 Rh4CG464800
rosa_wichuraiana Rw4G037520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 446
AccI GTMKAC 1 cut(s) 105
AciI CCGC 4 cut(s) 121, 139, 351, 444
AcyI GRCGYC 1 cut(s) 441
AfiI CCNNNNNNNGG 1 cut(s) 148
AgsI TTSAA 3 cut(s) 56, 227, 416
AjiI CACGTC 1 cut(s) 133
AjnI CCWGG 1 cut(s) 147
AluBI AGCT 3 cut(s) 241, 284, 357
AluI AGCT 3 cut(s) 241, 284, 357
Alw21I GWGCWC 1 cut(s) 243
Alw26I GTCTC 1 cut(s) 171
AoxI GGCC 3 cut(s) 150, 291, 432
ApeKI GCWGC 3 cut(s) 71, 88, 281
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 3 cut(s) 136, 151, 432
AvaII GGWCC 1 cut(s) 136
BanII GRGCYC 1 cut(s) 243
BbsI GAAGAC 2 cut(s) 26, 32
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 3 cut(s) 75, 83, 293
BceAI ACGGC 1 cut(s) 126
BciT130I CCWGG 1 cut(s) 149
BcoDI GTCTC 1 cut(s) 171
BglI GCCNNNNNGGC 1 cut(s) 359
BisI GCNGC 5 cut(s) 72, 89, 282, 351, 444
BlsI GCNGC 5 cut(s) 73, 90, 283, 352, 445
Bme1390I CCNGG 1 cut(s) 149
Bme18I GGWCC 1 cut(s) 136
BmgBI CACGTC 1 cut(s) 133
BmgT120I GGNCC 3 cut(s) 136, 151, 432
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 1 cut(s) 181
BpiI GAAGAC 2 cut(s) 26, 32
BpuEI CTTGAG 2 cut(s) 146, 272
Bsa29I ATCGAT 1 cut(s) 221
BsaHI GRCGYC 1 cut(s) 441
BsaJI CCNNGG 2 cut(s) 253, 435
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse1I ACTGG 1 cut(s) 201
Bse3DI GCAATG 2 cut(s) 296, 362
BseBI CCWGG 1 cut(s) 149
BseCI ATCGAT 1 cut(s) 221
BseDI CCNNGG 2 cut(s) 253, 435
BseGI GGATG 2 cut(s) 52, 238
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMI GCAATG 2 cut(s) 296, 362
BseNI ACTGG 1 cut(s) 201
BseRI GAGGAG 4 cut(s) 301, 304, 307, 310
BseXI GCAGC 3 cut(s) 75, 83, 293
BshFI GGCC 3 cut(s) 152, 293, 434
BshVI ATCGAT 1 cut(s) 221
BsiHKAI GWGCWC 1 cut(s) 243
BslI CCNNNNNNNGG 1 cut(s) 148
BsmAI GTCTC 1 cut(s) 171
BsnI GGCC 3 cut(s) 152, 293, 434
Bsp1286I GDGCHC 1 cut(s) 243
Bsp143I GATC 1 cut(s) 342
BspACI CCGC 4 cut(s) 121, 139, 351, 444
BspANI GGCC 3 cut(s) 152, 293, 434
BspDI ATCGAT 1 cut(s) 221
BsrBI CCGCTC 1 cut(s) 446
BsrDI GCAATG 2 cut(s) 296, 362
BsrI ACTGG 1 cut(s) 201
BssECI CCNNGG 2 cut(s) 253, 435
BssMI GATC 1 cut(s) 342
BssNI GRCGYC 1 cut(s) 441
BssT1I CCWWGG 1 cut(s) 435
Bst2UI CCWGG 1 cut(s) 149
Bst4CI ACNGT 1 cut(s) 429
Bst6I CTCTTC 2 cut(s) 51, 328
BstACI GRCGYC 1 cut(s) 441
BstC8I GCNNGC 3 cut(s) 210, 355, 448
BstF5I GGATG 2 cut(s) 52, 238
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 1 cut(s) 345
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 1 cut(s) 342
BstMWI GCNNNNNNNGC 3 cut(s) 290, 359, 440
BstNI CCWGG 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 147
BstV1I GCAGC 3 cut(s) 75, 83, 293
BstV2I GAAGAC 2 cut(s) 26, 32
Bsu15I ATCGAT 1 cut(s) 221
BsuRI GGCC 3 cut(s) 152, 293, 434
BsuTUI ATCGAT 1 cut(s) 221
BtgZI GCGATG 1 cut(s) 331
BtrI CACGTC 1 cut(s) 133
BtsCI GGATG 2 cut(s) 52, 238
BtsIMutI CAGTG 1 cut(s) 208
Cac8I GCNNGC 3 cut(s) 210, 355, 448
CfoI GCGC 1 cut(s) 208
Cfr13I GGNCC 3 cut(s) 136, 151, 432
ClaI ATCGAT 1 cut(s) 221
CseI GACGC 2 cut(s) 398, 449
CviAII CATG 1 cut(s) 304
CviJI RGCY 7 cut(s) 152, 241, 284, 293, 357, 375, 434
CviKI_1 RGCY 7 cut(s) 152, 241, 284, 293, 357, 375, 434
DpnI GATC 1 cut(s) 344
DpnII GATC 1 cut(s) 342
Eam1104I CTCTTC 2 cut(s) 51, 328
EarI CTCTTC 2 cut(s) 51, 328
Ecl136II GAGCTC 1 cut(s) 241
Eco130I CCWWGG 1 cut(s) 435
Eco147I AGGCCT 1 cut(s) 293
Eco24I GRGCYC 1 cut(s) 243
Eco47I GGWCC 1 cut(s) 136
Eco53kI GAGCTC 1 cut(s) 241
EcoICRI GAGCTC 1 cut(s) 241
EcoO109I RGGNCCY 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 147
EcoT14I CCWWGG 1 cut(s) 435
EcoT38I GRGCYC 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 435
FaeI CATG 1 cut(s) 307
FaiI YATR 3 cut(s) 86, 116, 305
FatI CATG 1 cut(s) 303
FauI CCCGC 1 cut(s) 128
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 5 cut(s) 72, 89, 282, 351, 444
FokI GGATG 2 cut(s) 59, 245
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 5 cut(s) 72, 89, 282, 351, 444
GlaI GCGC 1 cut(s) 207
GluI GCNGC 5 cut(s) 72, 89, 282, 351, 444
HaeIII GGCC 3 cut(s) 152, 293, 434
HgaI GACGC 2 cut(s) 398, 449
HhaI GCGC 1 cut(s) 208
Hin1I GRCGYC 1 cut(s) 441
Hin1II CATG 1 cut(s) 307
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HinfI GANTC 4 cut(s) 107, 172, 223, 276
Hpy166II GTNNAC 3 cut(s) 106, 136, 270
Hpy188I TCNGA 4 cut(s) 130, 171, 257, 472
Hpy8I GTNNAC 3 cut(s) 106, 136, 270
Hpy99I CGWCG 5 cut(s) 383, 386, 389, 392, 476
HpyAV CCTTC 1 cut(s) 468
HpyCH4III ACNGT 1 cut(s) 429
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 1 cut(s) 367
HpyF10VI GCNNNNNNNGC 3 cut(s) 290, 359, 440
HpySE526I ACGT 1 cut(s) 132
Hsp92I GRCGYC 1 cut(s) 441
Hsp92II CATG 1 cut(s) 307
HspAI GCGC 1 cut(s) 206
Kzo9I GATC 1 cut(s) 342
LmnI GCTCC 1 cut(s) 69
LpnPI CCDG 9 cut(s) 62, 134, 161, 214, 222, 278, 286, 357, 367
Lsp1109I GCAGC 3 cut(s) 75, 83, 293
LweI GCATC 1 cut(s) 181
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 214
MalI GATC 1 cut(s) 344
MbiI CCGCTC 1 cut(s) 446
MboI GATC 1 cut(s) 342
MboII GAAGA 9 cut(s) 31, 37, 43, 68, 315, 324, 327, 330, 413
MhlI GDGCHC 1 cut(s) 243
MluCI AATT 1 cut(s) 196
MlyI GAGTC 2 cut(s) 101, 166
MmeI TCCRAC 1 cut(s) 194
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
MwoI GCNNNNNNNGC 3 cut(s) 290, 359, 440
NdeII GATC 1 cut(s) 342
NlaIII CATG 1 cut(s) 307
NmeAIII GCCGAG 1 cut(s) 338
NmuCI GTSAC 1 cut(s) 214
PceI AGGCCT 1 cut(s) 293
PcsI WCGNNNNNNNCGW 2 cut(s) 99, 384
PfeI GAWTC 2 cut(s) 223, 276
PkrI GCNGC 5 cut(s) 73, 90, 283, 352, 445
PleI GAGTC 2 cut(s) 101, 166
PpsI GAGTC 2 cut(s) 101, 166
Psp124BI GAGCTC 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspPI GGNCC 3 cut(s) 136, 151, 432
SacI GAGCTC 1 cut(s) 243
SatI GCNGC 5 cut(s) 72, 89, 282, 351, 444
Sau3AI GATC 1 cut(s) 342
Sau96I GGNCC 3 cut(s) 136, 151, 432
SchI GAGTC 2 cut(s) 101, 166
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 1 cut(s) 243
SetI ASST 7 cut(s) 54, 135, 181, 243, 267, 286, 359
SfaNI GCATC 1 cut(s) 181
SinI GGWCC 1 cut(s) 136
SmlI CTYRAG 2 cut(s) 161, 287
SmoI CTYRAG 2 cut(s) 161, 287
Sse9I AATT 1 cut(s) 196
SseBI AGGCCT 1 cut(s) 293
SsiI CCGC 4 cut(s) 121, 139, 351, 444
SstI GAGCTC 1 cut(s) 243
StuI AGGCCT 1 cut(s) 293
StyD4I CCNGG 1 cut(s) 147
StyI CCWWGG 1 cut(s) 435
TaaI ACNGT 1 cut(s) 429
TaiI ACGT 1 cut(s) 135
TaqI TCGA 2 cut(s) 221, 341
TaqII GACCGA 1 cut(s) 83
TasI AATT 1 cut(s) 196
TauI GCSGC 2 cut(s) 353, 446
TfiI GAWTC 2 cut(s) 223, 276
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 3 cut(s) 71, 88, 281
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 3 cut(s) 17, 414, 423
TspGWI ACGGA 2 cut(s) 53, 91
TspRI CASTG 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 136
XmiI GTMKAC 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.