RchiOBHm_Chr4g0447031

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0017172
Physical Location & Seq
Reverse (-)
66933057 .. 66933778
722 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41451

Sequence Viewer

Length: 468 bp
ATGAATAGGAACAAGGGGAAGACAAAGACGAAGACGAAGAAAACGGAAAAGGATGAGGTTGAAGAGTTGCTCCAAGCAGCACAGGACGATATGCTGCTCGGTCTATCCGTAGACTCTCACATATCCCGCCTTTCTGACGTGGACCGCCGTTTCCAGGCCCTCAAACTCAAGTCTCCGACTCCACCTAAAGTTGCCGATGCTAATTCCAGTGCGCCTGCTGTCACATCGATTCAAGTGGATGAAGAGCTCAAAGCAGTCCTCGGAGATGACCTGTCCACCAGATTCGCAGCTCTCAAGGCCTCAGTGCCCATGCCCTCCTCTTCTTCTTCCATCATCGCCGCCAGCTCGGCATTGCACGACGACGACGACGACGCTGTTGATGAAGATGATGAAGTTGAAAAGTTGATACGGTGGGCCAAGGACGCCGCTCGCCTTGACCCTTCTCCACCCTCCGACGATGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

16.8

Weight (kDa)

4.59

Isoelectric Point (pI)

50.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24370
fragaria_vesca FvH4_4g37240
malus_domestica MD13G1002400.v1.1
prunus_persica Prupe.1G350000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0447031
rosa_laevigata RLG00000005611
rosa_multiflora Rmu_sc0014071.1_g000008 Rmu_sc0019356.1_g000003
rosa_roxburghii Rroxscaffold_5G00387350
rosa_rugosa Rorug04G0377200
rosa_samantha Rh4BG447700 Rh4CG464800
rosa_wichuraiana Rw4G037520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 428
AccI GTMKAC 1 cut(s) 111
AciI CCGC 4 cut(s) 127, 145, 339, 426
AcyI GRCGYC 1 cut(s) 423
AfiI CCNNNNNNNGG 1 cut(s) 154
AgsI TTSAA 3 cut(s) 62, 233, 398
AjiI CACGTC 1 cut(s) 139
AjnI CCWGG 1 cut(s) 153
AluBI AGCT 3 cut(s) 247, 290, 345
AluI AGCT 3 cut(s) 247, 290, 345
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 1 cut(s) 177
AoxI GGCC 3 cut(s) 156, 297, 414
ApeKI GCWGC 3 cut(s) 77, 94, 287
AspLEI GCGC 1 cut(s) 214
AspS9I GGNCC 3 cut(s) 142, 157, 414
AvaII GGWCC 1 cut(s) 142
BaeGI GKGCMC 1 cut(s) 309
BanII GRGCYC 1 cut(s) 249
BbsI GAAGAC 2 cut(s) 26, 38
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 3 cut(s) 81, 89, 299
BccI CCATC 1 cut(s) 338
BceAI ACGGC 1 cut(s) 132
BciT130I CCWGG 1 cut(s) 155
BcoDI GTCTC 1 cut(s) 177
BglI GCCNNNNNGGC 1 cut(s) 347
BisI GCNGC 5 cut(s) 78, 95, 288, 339, 426
BlsI GCNGC 5 cut(s) 79, 96, 289, 340, 427
Bme1390I CCNGG 1 cut(s) 155
Bme18I GGWCC 1 cut(s) 142
BmgBI CACGTC 1 cut(s) 139
BmgT120I GGNCC 3 cut(s) 142, 157, 414
BmrFI CCNGG 1 cut(s) 155
BmsI GCATC 1 cut(s) 187
BpiI GAAGAC 2 cut(s) 26, 38
BpuEI CTTGAG 2 cut(s) 152, 278
Bsa29I ATCGAT 1 cut(s) 227
BsaHI GRCGYC 1 cut(s) 423
BsaJI CCNNGG 2 cut(s) 259, 417
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse1I ACTGG 1 cut(s) 207
Bse3DI GCAATG 1 cut(s) 350
BseBI CCWGG 1 cut(s) 155
BseCI ATCGAT 1 cut(s) 227
BseDI CCNNGG 2 cut(s) 259, 417
BseGI GGATG 2 cut(s) 58, 244
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMI GCAATG 1 cut(s) 350
BseMII CTCAG 1 cut(s) 315
BseNI ACTGG 1 cut(s) 207
BseRI GAGGAG 1 cut(s) 307
BseSI GKGCMC 1 cut(s) 309
BseXI GCAGC 3 cut(s) 81, 89, 299
BshFI GGCC 3 cut(s) 158, 299, 416
BshVI ATCGAT 1 cut(s) 227
BsiHKAI GWGCWC 1 cut(s) 249
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 1 cut(s) 177
BsnI GGCC 3 cut(s) 158, 299, 416
Bsp1286I GDGCHC 2 cut(s) 249, 309
BspACI CCGC 4 cut(s) 127, 145, 339, 426
BspANI GGCC 3 cut(s) 158, 299, 416
BspCNI CTCAG 1 cut(s) 314
BspDI ATCGAT 1 cut(s) 227
BspQI GCTCTTC 1 cut(s) 237
BsrBI CCGCTC 1 cut(s) 428
BsrDI GCAATG 1 cut(s) 350
BsrI ACTGG 1 cut(s) 207
BssECI CCNNGG 2 cut(s) 259, 417
BssNI GRCGYC 1 cut(s) 423
BssT1I CCWWGG 1 cut(s) 417
Bst2UI CCWGG 1 cut(s) 155
Bst4CI ACNGT 1 cut(s) 411
Bst6I CTCTTC 3 cut(s) 57, 237, 325
BstACI GRCGYC 1 cut(s) 423
BstC8I GCNNGC 3 cut(s) 216, 343, 430
BstDEI CTNAG 1 cut(s) 301
BstF5I GGATG 2 cut(s) 58, 244
BstHHI GCGC 1 cut(s) 214
BstMAI GTCTC 1 cut(s) 177
BstMWI GCNNNNNNNGC 3 cut(s) 296, 347, 422
BstNI CCWGG 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 153
BstSLI GKGCMC 1 cut(s) 309
BstV1I GCAGC 3 cut(s) 81, 89, 299
BstV2I GAAGAC 2 cut(s) 26, 38
Bsu15I ATCGAT 1 cut(s) 227
BsuRI GGCC 3 cut(s) 158, 299, 416
BsuTUI ATCGAT 1 cut(s) 227
BtgZI GCGATG 1 cut(s) 319
BtrI CACGTC 1 cut(s) 139
BtsCI GGATG 2 cut(s) 58, 244
BtsIMutI CAGTG 2 cut(s) 214, 309
Cac8I GCNNGC 3 cut(s) 216, 343, 430
CfoI GCGC 1 cut(s) 214
Cfr13I GGNCC 3 cut(s) 142, 157, 414
ClaI ATCGAT 1 cut(s) 227
CseI GACGC 2 cut(s) 380, 431
CviAII CATG 1 cut(s) 310
CviJI RGCY 6 cut(s) 158, 247, 290, 299, 345, 416
CviKI_1 RGCY 6 cut(s) 158, 247, 290, 299, 345, 416
DdeI CTNAG 1 cut(s) 301
Eam1104I CTCTTC 3 cut(s) 57, 237, 325
EarI CTCTTC 3 cut(s) 57, 237, 325
Ecl136II GAGCTC 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 417
Eco147I AGGCCT 1 cut(s) 299
Eco24I GRGCYC 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 142
Eco53kI GAGCTC 1 cut(s) 247
EcoICRI GAGCTC 1 cut(s) 247
EcoO109I RGGNCCY 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 153
EcoT14I CCWWGG 1 cut(s) 417
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 1 cut(s) 313
FaiI YATR 3 cut(s) 92, 122, 311
FatI CATG 1 cut(s) 309
FauI CCCGC 1 cut(s) 134
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 5 cut(s) 78, 95, 288, 339, 426
FokI GGATG 2 cut(s) 65, 251
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 5 cut(s) 78, 95, 288, 339, 426
GlaI GCGC 1 cut(s) 213
GluI GCNGC 5 cut(s) 78, 95, 288, 339, 426
HaeIII GGCC 3 cut(s) 158, 299, 416
HgaI GACGC 2 cut(s) 380, 431
HhaI GCGC 1 cut(s) 214
Hin1I GRCGYC 1 cut(s) 423
Hin1II CATG 1 cut(s) 313
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HinfI GANTC 4 cut(s) 113, 178, 229, 282
Hpy166II GTNNAC 3 cut(s) 112, 142, 276
Hpy188I TCNGA 4 cut(s) 136, 177, 263, 454
Hpy8I GTNNAC 3 cut(s) 112, 142, 276
Hpy99I CGWCG 6 cut(s) 362, 365, 368, 371, 374, 458
HpyAV CCTTC 1 cut(s) 450
HpyCH4III ACNGT 1 cut(s) 411
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 1 cut(s) 355
HpyF10VI GCNNNNNNNGC 3 cut(s) 296, 347, 422
HpyF3I CTNAG 1 cut(s) 301
HpySE526I ACGT 1 cut(s) 138
Hsp92I GRCGYC 1 cut(s) 423
Hsp92II CATG 1 cut(s) 313
HspAI GCGC 1 cut(s) 212
LguI GCTCTTC 1 cut(s) 237
LmnI GCTCC 1 cut(s) 75
LpnPI CCDG 8 cut(s) 68, 140, 167, 220, 228, 284, 292, 355
Lsp1109I GCAGC 3 cut(s) 81, 89, 299
LweI GCATC 1 cut(s) 187
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 1 cut(s) 220
MbiI CCGCTC 1 cut(s) 428
MboII GAAGA 9 cut(s) 31, 43, 49, 74, 254, 312, 315, 318, 395
MhlI GDGCHC 2 cut(s) 249, 309
MluCI AATT 1 cut(s) 202
MlyI GAGTC 2 cut(s) 107, 172
MmeI TCCRAC 1 cut(s) 200
MnlI CCTC 7 cut(s) 49, 170, 269, 310, 325, 328, 460
MspR9I CCNGG 1 cut(s) 155
MvaI CCWGG 1 cut(s) 155
MwoI GCNNNNNNNGC 3 cut(s) 296, 347, 422
NlaIII CATG 1 cut(s) 313
NmeAIII GCCGAG 1 cut(s) 326
NmuCI GTSAC 1 cut(s) 220
PceI AGGCCT 1 cut(s) 299
PciSI GCTCTTC 1 cut(s) 237
PcsI WCGNNNNNNNCGW 3 cut(s) 105, 363, 366
PfeI GAWTC 2 cut(s) 229, 282
PkrI GCNGC 5 cut(s) 79, 96, 289, 340, 427
PleI GAGTC 2 cut(s) 107, 172
PpsI GAGTC 2 cut(s) 107, 172
Psp124BI GAGCTC 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 153
PspGI CCWGG 1 cut(s) 153
PspPI GGNCC 3 cut(s) 142, 157, 414
SacI GAGCTC 1 cut(s) 249
SapI GCTCTTC 1 cut(s) 237
SatI GCNGC 5 cut(s) 78, 95, 288, 339, 426
Sau96I GGNCC 3 cut(s) 142, 157, 414
SchI GAGTC 2 cut(s) 107, 172
ScrFI CCNGG 1 cut(s) 155
SduI GDGCHC 2 cut(s) 249, 309
SetI ASST 7 cut(s) 60, 141, 187, 249, 273, 292, 347
SfaNI GCATC 1 cut(s) 187
SinI GGWCC 1 cut(s) 142
SmlI CTYRAG 2 cut(s) 167, 293
SmoI CTYRAG 2 cut(s) 167, 293
Sse9I AATT 1 cut(s) 202
SseBI AGGCCT 1 cut(s) 299
SsiI CCGC 4 cut(s) 127, 145, 339, 426
SstI GAGCTC 1 cut(s) 249
StuI AGGCCT 1 cut(s) 299
StyD4I CCNGG 1 cut(s) 153
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 1 cut(s) 411
TaiI ACGT 1 cut(s) 141
TaqI TCGA 1 cut(s) 227
TaqII GACCGA 1 cut(s) 89
TasI AATT 1 cut(s) 202
TauI GCSGC 2 cut(s) 341, 428
TfiI GAWTC 2 cut(s) 229, 282
TscAI CASTG 2 cut(s) 214, 309
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 3 cut(s) 77, 94, 287
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 4 cut(s) 17, 255, 396, 405
TspGWI ACGGA 2 cut(s) 59, 97
TspRI CASTG 2 cut(s) 214, 309
VpaK11BI GGWCC 1 cut(s) 142
XmiI GTMKAC 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.