Prupe.1G350000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017172
Physical Location & Seq
Reverse (-)
32616494 .. 32617312
819 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G350000.1

Sequence Viewer

Length: 555 bp
ATGAAGAGGAAGACGAAGAAAGAAACAGAGAGGGATGAAGTTGAAGAGTTGCTGCAAGCAGCACAGGACGATATGCTCCTGAAGCTGTCTCTCAACTCTCACTTGTCCCGCGGCGTTTCTCTCGACGACGCCGATATCGGCCGTCGCTTCGAGGCCCTCAAAATGAAAACTGTTATTACTGGAGCAGCACCAGGAGCAGGAGCAGGACCTGCTGCCTCTTCTGTCTCCAAATCCAATTCCAATTCCATTCAAGTGGATGAGGAACTAAAGGCAGTCCTCGGTGACGACCTCTCCACCAGATTCGCCGCCCTCAAGGCTTCAATTCCTATGCCCTCCTCCGATGCTGCCGTCCGGTCGTCGGCATCATCCTACTACGAGATCGACAACGACAACGACGATGAAGATGAAGTTGAAAAATTGATACGCTGGGCTAAGGACGCCGCTCGCCTCGACCCTTCTCCACCCTCCGACGATGACGACGACCAAGACAAATCGGAATCTGATGATGACGACCACCACGACGATCCAAAGGGGAATGGACCCGATCGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

19.97

Weight (kDa)

4.45

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24370
fragaria_vesca FvH4_4g37240
malus_domestica MD13G1002400.v1.1
prunus_persica Prupe.1G350000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0447031
rosa_laevigata RLG00000005611
rosa_multiflora Rmu_sc0014071.1_g000008 Rmu_sc0019356.1_g000003
rosa_roxburghii Rroxscaffold_5G00387350
rosa_rugosa Rorug04G0377200
rosa_samantha Rh4BG447700 Rh4CG464800
rosa_wichuraiana Rw4G037520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 217
AccBSI CCGCTC 1 cut(s) 443
AccII CGCG 1 cut(s) 111
AciI CCGC 4 cut(s) 109, 111, 306, 441
AclWI GGATC 1 cut(s) 518
AcoI YGGCCR 1 cut(s) 139
AcuI CTGAAG 1 cut(s) 101
AcyI GRCGYC 2 cut(s) 129, 438
AfiI CCNNNNNNNGG 2 cut(s) 197, 358
AgsI TTSAA 4 cut(s) 44, 251, 321, 413
AjnI CCWGG 1 cut(s) 190
AluBI AGCT 1 cut(s) 85
AluI AGCT 1 cut(s) 85
Alw26I GTCTC 2 cut(s) 93, 229
AlwI GGATC 1 cut(s) 518
AlwNI CAGNNNCTG 1 cut(s) 209
AoxI GGCC 2 cut(s) 139, 153
ApeKI GCWGC 5 cut(s) 52, 59, 185, 212, 344
AspS9I GGNCC 3 cut(s) 154, 206, 539
AsuHPI GGTGA 1 cut(s) 293
AvaII GGWCC 2 cut(s) 206, 539
BbsI GAAGAC 1 cut(s) 17
BbvI GCAGC 5 cut(s) 39, 71, 197, 199, 331
BceAI ACGGC 2 cut(s) 126, 332
BciT130I CCWGG 1 cut(s) 192
BcoDI GTCTC 2 cut(s) 93, 229
BfuAI ACCTGC 1 cut(s) 217
BglI GCCNNNNNGGC 1 cut(s) 314
BisI GCNGC 8 cut(s) 53, 60, 112, 186, 213, 306, 345, 441
BlsI GCNGC 8 cut(s) 54, 61, 113, 187, 214, 307, 346, 442
Bme1390I CCNGG 1 cut(s) 192
Bme18I GGWCC 2 cut(s) 206, 539
BmgT120I GGNCC 3 cut(s) 154, 206, 539
BmiI GGNNCC 1 cut(s) 541
BmrFI CCNGG 1 cut(s) 192
BmsI GCATC 2 cut(s) 331, 371
BpiI GAAGAC 1 cut(s) 17
BpmI CTGGAG 1 cut(s) 201
Bpu10I CCTNAGC 1 cut(s) 432
BpuEI CTTGAG 1 cut(s) 296
BsaHI GRCGYC 2 cut(s) 129, 438
BsaJI CCNNGG 2 cut(s) 109, 277
BsaWI WCCGGW 1 cut(s) 351
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bsc4I CCNNNNNNNGG 2 cut(s) 197, 358
Bse1I ACTGG 1 cut(s) 184
BseBI CCWGG 1 cut(s) 192
BseDI CCNNGG 2 cut(s) 109, 277
BseGI GGATG 3 cut(s) 40, 262, 365
BseLI CCNNNNNNNGG 2 cut(s) 197, 358
BseNI ACTGG 1 cut(s) 184
BseRI GAGGAG 1 cut(s) 325
BseX3I CGGCCG 1 cut(s) 139
BseXI GCAGC 5 cut(s) 39, 71, 197, 199, 331
BseYI CCCAGC 1 cut(s) 426
Bsh1236I CGCG 1 cut(s) 111
Bsh1285I CGRYCG 3 cut(s) 142, 356, 547
BshFI GGCC 2 cut(s) 141, 155
BsiEI CGRYCG 3 cut(s) 142, 356, 547
BsiSI CCGG 1 cut(s) 352
BslFI GGGAC 1 cut(s) 91
BslI CCNNNNNNNGG 2 cut(s) 197, 358
BsmAI GTCTC 2 cut(s) 93, 229
BsmFI GGGAC 1 cut(s) 91
BsnI GGCC 2 cut(s) 141, 155
Bsp143I GATC 3 cut(s) 378, 523, 544
BspACI CCGC 4 cut(s) 109, 111, 306, 441
BspANI GGCC 2 cut(s) 141, 155
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 1 cut(s) 541
BspMI ACCTGC 1 cut(s) 217
BspPI GGATC 1 cut(s) 518
BsrBI CCGCTC 1 cut(s) 443
BsrI ACTGG 1 cut(s) 184
BssECI CCNNGG 2 cut(s) 109, 277
BssMI GATC 3 cut(s) 378, 523, 544
BssNI GRCGYC 2 cut(s) 129, 438
Bst2UI CCWGG 1 cut(s) 192
Bst4CI ACNGT 1 cut(s) 172
Bst6I CTCTTC 2 cut(s) 39, 223
BstACI GRCGYC 2 cut(s) 129, 438
BstAPI GCANNNNNTGC 1 cut(s) 209
BstC8I GCNNGC 2 cut(s) 57, 445
BstDEI CTNAG 1 cut(s) 432
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 3 cut(s) 40, 262, 365
BstFNI CGCG 1 cut(s) 111
BstKTI GATC 3 cut(s) 381, 526, 547
BstMAI GTCTC 2 cut(s) 93, 229
BstMBI GATC 3 cut(s) 378, 523, 544
BstMCI CGRYCG 3 cut(s) 142, 356, 547
BstMWI GCNNNNNNNGC 5 cut(s) 82, 194, 209, 314, 437
BstNI CCWGG 1 cut(s) 192
BstSCI CCNGG 1 cut(s) 190
BstUI CGCG 1 cut(s) 111
BstV1I GCAGC 5 cut(s) 39, 71, 197, 199, 331
BstV2I GAAGAC 1 cut(s) 17
BstXI CCANNNNNNTGG 1 cut(s) 253
BstZI CGGCCG 1 cut(s) 139
BsuRI GGCC 2 cut(s) 141, 155
BtgI CCRYGG 1 cut(s) 109
BtsCI GGATG 3 cut(s) 40, 262, 365
BveI ACCTGC 1 cut(s) 217
Cac8I GCNNGC 2 cut(s) 57, 445
CaiI CAGNNNCTG 1 cut(s) 209
Cfr13I GGNCC 3 cut(s) 154, 206, 539
Cfr42I CCGCGG 1 cut(s) 112
CseI GACGC 2 cut(s) 137, 446
CviJI RGCY 5 cut(s) 85, 141, 155, 317, 431
CviKI_1 RGCY 5 cut(s) 85, 141, 155, 317, 431
DdeI CTNAG 1 cut(s) 432
DpnI GATC 3 cut(s) 380, 525, 546
DpnII GATC 3 cut(s) 378, 523, 544
EaeI YGGCCR 1 cut(s) 139
EagI CGGCCG 1 cut(s) 139
Eam1104I CTCTTC 2 cut(s) 39, 223
EarI CTCTTC 2 cut(s) 39, 223
EclXI CGGCCG 1 cut(s) 139
Eco32I GATATC 1 cut(s) 136
Eco47I GGWCC 2 cut(s) 206, 539
Eco52I CGGCCG 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 101
EcoO109I RGGNCCY 2 cut(s) 154, 206
EcoRII CCWGG 1 cut(s) 190
EcoRV GATATC 1 cut(s) 136
FaiI YATR 2 cut(s) 74, 329
FaqI GGGAC 1 cut(s) 91
FauI CCCGC 1 cut(s) 116
Fnu4HI GCNGC 8 cut(s) 53, 60, 112, 186, 213, 306, 345, 441
FokI GGATG 3 cut(s) 47, 269, 352
Fsp4HI GCNGC 8 cut(s) 53, 60, 112, 186, 213, 306, 345, 441
GluI GCNGC 8 cut(s) 53, 60, 112, 186, 213, 306, 345, 441
GsaI CCCAGC 1 cut(s) 430
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 2 cut(s) 141, 155
HapII CCGG 1 cut(s) 352
HgaI GACGC 2 cut(s) 137, 446
Hin1I GRCGYC 2 cut(s) 129, 438
HinfI GANTC 2 cut(s) 300, 497
HpaII CCGG 1 cut(s) 352
HphI GGTGA 1 cut(s) 293
Hpy188I TCNGA 4 cut(s) 340, 469, 496, 502
Hpy188III TCNNGA 2 cut(s) 79, 122
Hpy99I CGWCG 8 cut(s) 128, 131, 147, 361, 398, 473, 482, 524
HpyAV CCTTC 1 cut(s) 465
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4V TGCA 1 cut(s) 55
HpyF10VI GCNNNNNNNGC 5 cut(s) 82, 194, 209, 314, 437
HpyF3I CTNAG 1 cut(s) 432
Hsp92I GRCGYC 2 cut(s) 129, 438
KspI CCGCGG 1 cut(s) 112
Kzo9I GATC 3 cut(s) 378, 523, 544
LmnI GCTCC 4 cut(s) 81, 182, 194, 200
Lsp1109I GCAGC 5 cut(s) 39, 71, 197, 199, 331
LweI GCATC 2 cut(s) 331, 371
MaeIII GTNAC 1 cut(s) 281
MalI GATC 3 cut(s) 380, 525, 546
MbiI CCGCTC 1 cut(s) 443
MboI GATC 3 cut(s) 378, 523, 544
MboII GAAGA 6 cut(s) 16, 22, 28, 56, 210, 413
MluCI AATT 4 cut(s) 235, 241, 321, 416
MmeI TCCRAC 1 cut(s) 492
MslI CAYNNNNRTG 1 cut(s) 251
MspA1I CMGCKG 1 cut(s) 111
MspI CCGG 1 cut(s) 352
MspR9I CCNGG 1 cut(s) 192
MvaI CCWGG 1 cut(s) 192
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 5 cut(s) 82, 194, 209, 314, 437
NdeII GATC 3 cut(s) 378, 523, 544
NlaIV GGNNCC 1 cut(s) 541
NmuCI GTSAC 1 cut(s) 281
PcsI WCGNNNNNNNCGW 4 cut(s) 129, 393, 477, 516
PfeI GAWTC 2 cut(s) 300, 497
PkrI GCNGC 8 cut(s) 54, 61, 113, 187, 214, 307, 346, 442
Ple19I CGATCG 1 cut(s) 547
PpuMI RGGWCCY 1 cut(s) 206
Psp5II RGGWCCY 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 190
PspFI CCCAGC 1 cut(s) 426
PspGI CCWGG 1 cut(s) 190
PspN4I GGNNCC 1 cut(s) 541
PspPI GGNCC 3 cut(s) 154, 206, 539
PspPPI RGGWCCY 1 cut(s) 206
PstNI CAGNNNCTG 1 cut(s) 209
PvuI CGATCG 1 cut(s) 547
RseI CAYNNNNRTG 1 cut(s) 251
SacII CCGCGG 1 cut(s) 112
SatI GCNGC 8 cut(s) 53, 60, 112, 186, 213, 306, 345, 441
Sau3AI GATC 3 cut(s) 378, 523, 544
Sau96I GGNCC 3 cut(s) 154, 206, 539
ScrFI CCNGG 1 cut(s) 192
SetI ASST 3 cut(s) 87, 211, 291
SfaNI GCATC 2 cut(s) 331, 371
Sfr303I CCGCGG 1 cut(s) 112
SgrBI CCGCGG 1 cut(s) 112
SinI GGWCC 2 cut(s) 206, 539
SmiMI CAYNNNNRTG 1 cut(s) 251
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 4 cut(s) 235, 241, 321, 416
SsiI CCGC 4 cut(s) 109, 111, 306, 441
StyD4I CCNGG 1 cut(s) 190
TaaI ACNGT 1 cut(s) 172
TaqI TCGA 4 cut(s) 123, 150, 381, 450
TasI AATT 4 cut(s) 235, 241, 321, 416
TauI GCSGC 3 cut(s) 114, 308, 443
TfiI GAWTC 2 cut(s) 300, 497
TseFI GTSAC 1 cut(s) 281
TseI GCWGC 5 cut(s) 52, 59, 185, 212, 344
Tsp45I GTSAC 1 cut(s) 281
TspDTI ATGAA 5 cut(s) 17, 51, 179, 414, 420
VpaK11BI GGWCC 2 cut(s) 206, 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.