FvH4_5g01760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015616
Physical Location & Seq
Reverse (-)
1118098 .. 1118703
606 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g01760.t1

Sequence Viewer

Length: 606 bp
ATGGAGATCACAGTGATATCAGCTCAAGGCCTCAAGAACTCCTCCCACTTTTGCCACAAGATTAGACCCTTCATCACCCTCACCACTTCTCCACCGGCTGCCGCACCGTGCCGTCCCTCCGGCGACGAGAATTCACACGTGTACAAAACGAGGGTGGATGATGAAGGAGGGATCAACCCAACATGGGGTGACAAGTTCTTGGTTCCTCTAGACGCGGGTTTCTTGAGCAACAGGTATTCTTGCATATATCTCCAGCTTTACACTAAGCGGCTCATAATGGGCCGGGCTCAGCTAGGCTGGTGTCAAATCCCGGCCTATGATATCGTCGGCTTCCCGGCGACGGGCTCAGTCCGGTACCTGAGTTACCGGCTACGGGCTAGGGACGGTACAAGGACTAATGGGGTCGTGAACGTTGCTGTCAAGTTGGAGAATATGGCGCCGGTGATCAGTCAGAATATGGTGTCAGTTAACTCTATGTCAACGACATTTGAGACGTGTGGCACGGTTATTGGTACTCCGGTGACACAGCTACCACCTTTGGCCGGCGAGTGCTCCGTTACGTGTCAGGGACAGATGAATCATTTTGGTTTTCTTGGCAATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

202

Amino Acids

21.91

Weight (kDa)

8.71

Isoelectric Point (pI)

31.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 2 - 105 2.1e-07 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015616)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01760
malus_domestica MD00G1110200.v1.1 MD04G1064800.v1.1
prunus_persica Prupe.5G093100_v2.0.a1
pyrus_communis pycom04g05860 pycom06g07400
rosa_chinensis RchiOBHm_Chr7g0198961
rosa_laevigata RLG00000003829
rosa_multiflora Rmu_sc0006266.1_g000021
rosa_roxburghii Rroxscaffold_3G00257270
rosa_rugosa Rorug07G0051700
rosa_samantha Rh7AG174700 Rh7BG177900 Rh7CG183900 Rh7DG177300
rosa_wichuraiana Rw7G015320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 354
AccB1I GGYRCC 2 cut(s) 354, 436
AccII CGCG 1 cut(s) 215
AciI CCGC 3 cut(s) 102, 215, 268
AclI AACGTT 1 cut(s) 411
AclWI GGATC 1 cut(s) 179
AcoI YGGCCR 1 cut(s) 540
AcsI RAATTY 1 cut(s) 130
AcvI CACGTG 1 cut(s) 139
AcyI GRCGYC 1 cut(s) 437
AfaI GTAC 4 cut(s) 143, 356, 388, 514
AfiI CCNNNNNNNGG 6 cut(s) 184, 185, 340, 341, 373, 542
AflIII ACRYGT 4 cut(s) 136, 138, 494, 560
AjiI CACGTC 1 cut(s) 495
AluBI AGCT 4 cut(s) 23, 256, 292, 529
AluI AGCT 4 cut(s) 23, 256, 292, 529
Alw21I GWGCWC 1 cut(s) 554
Alw26I GTCTC 1 cut(s) 485
AlwI GGATC 1 cut(s) 179
AoxI GGCC 4 cut(s) 28, 280, 312, 540
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 1 cut(s) 130
Asp718I GGTACC 1 cut(s) 354
AspLEI GCGC 1 cut(s) 439
AspS9I GGNCC 1 cut(s) 280
AsuC2I CCSGG 3 cut(s) 284, 311, 335
AsuHPI GGTGA 5 cut(s) 67, 73, 200, 454, 532
BaeI ACNNNNGTAYC 4 cut(s) 346, 379, 504, 537
BanI GGYRCC 2 cut(s) 354, 436
BanII GRGCYC 2 cut(s) 289, 347
BbrPI CACGTG 1 cut(s) 139
Bbv12I GWGCWC 1 cut(s) 554
BbvI GCAGC 1 cut(s) 85
BceAI ACGGC 1 cut(s) 96
BclI TGATCA 1 cut(s) 444
BcnI CCSGG 3 cut(s) 284, 311, 335
BcoDI GTCTC 1 cut(s) 485
BfaI CTAG 3 cut(s) 209, 293, 378
BfoI RGCGCY 1 cut(s) 440
BisI GCNGC 3 cut(s) 99, 102, 269
BlpI GCTNAGC 1 cut(s) 288
BlsI GCNGC 3 cut(s) 100, 103, 270
Bme1390I CCNGG 3 cut(s) 284, 311, 335
BmgBI CACGTC 1 cut(s) 495
BmgT120I GGNCC 1 cut(s) 280
BmiI GGNNCC 3 cut(s) 204, 356, 438
BmrFI CCNGG 3 cut(s) 284, 311, 335
BpmI CTGGAG 1 cut(s) 236
Bpu1102I GCTNAGC 1 cut(s) 288
BpuEI CTTGAG 3 cut(s) 9, 17, 244
BpuMI CCSGG 3 cut(s) 284, 311, 335
BsaAI YACGTR 2 cut(s) 139, 561
BsaHI GRCGYC 1 cut(s) 437
BsaWI WCCGGW 2 cut(s) 351, 517
BsaXI ACNNNNNCTCC 2 cut(s) 73, 103
Bsc4I CCNNNNNNNGG 6 cut(s) 184, 185, 340, 341, 373, 542
Bse118I RCCGGY 4 cut(s) 94, 366, 439, 542
Bse3DI GCAATG 1 cut(s) 604
BseGI GGATG 1 cut(s) 163
BseLI CCNNNNNNNGG 6 cut(s) 184, 185, 340, 341, 373, 542
BseMI GCAATG 1 cut(s) 604
BseMII CTCAG 3 cut(s) 302, 350, 360
BseRI GAGGAG 1 cut(s) 31
BseXI GCAGC 1 cut(s) 85
Bsh1236I CGCG 1 cut(s) 215
BshFI GGCC 4 cut(s) 30, 282, 314, 542
BshNI GGYRCC 2 cut(s) 354, 436
BsiHKAI GWGCWC 1 cut(s) 554
BslFI GGGAC 3 cut(s) 99, 395, 582
BslI CCNNNNNNNGG 6 cut(s) 184, 185, 340, 341, 373, 542
BsmAI GTCTC 1 cut(s) 485
BsmBI CGTCTC 1 cut(s) 485
BsmFI GGGAC 3 cut(s) 99, 395, 582
BsnI GGCC 4 cut(s) 30, 282, 314, 542
Bsp1286I GDGCHC 3 cut(s) 289, 347, 554
Bsp1407I TGTACA 1 cut(s) 141
Bsp143I GATC 3 cut(s) 6, 171, 444
Bsp1720I GCTNAGC 1 cut(s) 288
BspACI CCGC 3 cut(s) 102, 215, 268
BspANI GGCC 4 cut(s) 30, 282, 314, 542
BspCNI CTCAG 3 cut(s) 301, 351, 359
BspFNI CGCG 1 cut(s) 215
BspLI GGNNCC 3 cut(s) 204, 356, 438
BspPI GGATC 1 cut(s) 179
BspT107I GGYRCC 2 cut(s) 354, 436
BsrDI GCAATG 1 cut(s) 604
BsrFI RCCGGY 4 cut(s) 94, 366, 439, 542
BsrGI TGTACA 1 cut(s) 141
BssAI RCCGGY 4 cut(s) 94, 366, 439, 542
BssMI GATC 3 cut(s) 6, 171, 444
BssNI GRCGYC 1 cut(s) 437
Bst4CI ACNGT 4 cut(s) 13, 108, 386, 505
BstACI GRCGYC 1 cut(s) 437
BstAUI TGTACA 1 cut(s) 141
BstBAI YACGTR 2 cut(s) 139, 561
BstC8I GCNNGC 1 cut(s) 544
BstDEI CTNAG 4 cut(s) 264, 288, 346, 359
BstF5I GGATG 1 cut(s) 163
BstFNI CGCG 1 cut(s) 215
BstH2I RGCGCY 1 cut(s) 440
BstHHI GCGC 1 cut(s) 439
BstKTI GATC 3 cut(s) 9, 174, 447
BstMAI GTCTC 1 cut(s) 485
BstMBI GATC 3 cut(s) 6, 171, 444
BstSCI CCNGG 3 cut(s) 282, 309, 333
BstUI CGCG 1 cut(s) 215
BstV1I GCAGC 1 cut(s) 85
BsuRI GGCC 4 cut(s) 30, 282, 314, 542
BtrI CACGTC 1 cut(s) 495
BtsCI GGATG 1 cut(s) 163
BtsIMutI CAGTG 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 544
CfoI GCGC 1 cut(s) 439
Cfr10I RCCGGY 4 cut(s) 94, 366, 439, 542
Cfr13I GGNCC 1 cut(s) 280
CseI GACGC 1 cut(s) 221
Csp6I GTAC 4 cut(s) 142, 355, 387, 513
CviAII CATG 1 cut(s) 183
CviQI GTAC 4 cut(s) 142, 355, 387, 513
DdeI CTNAG 4 cut(s) 264, 288, 346, 359
DinI GGCGCC 1 cut(s) 438
DpnI GATC 3 cut(s) 8, 173, 446
DpnII GATC 3 cut(s) 6, 171, 444
EaeI YGGCCR 1 cut(s) 540
Eco147I AGGCCT 1 cut(s) 30
Eco24I GRGCYC 2 cut(s) 289, 347
Eco32I GATATC 2 cut(s) 18, 322
Eco72I CACGTG 1 cut(s) 139
EcoRI GAATTC 1 cut(s) 130
EcoRV GATATC 2 cut(s) 18, 322
EcoT38I GRGCYC 2 cut(s) 289, 347
EgeI GGCGCC 1 cut(s) 438
EheI GGCGCC 1 cut(s) 438
Esp3I CGTCTC 1 cut(s) 485
FaeI CATG 1 cut(s) 186
FaiI YATR 9 cut(s) 184, 245, 247, 275, 318, 434, 458, 476, 604
FaqI GGGAC 3 cut(s) 99, 395, 582
FatI CATG 1 cut(s) 182
FauI CCCGC 1 cut(s) 208
FbaI TGATCA 1 cut(s) 444
Fnu4HI GCNGC 3 cut(s) 99, 102, 269
FokI GGATG 1 cut(s) 170
FriOI GRGCYC 2 cut(s) 289, 347
Fsp4HI GCNGC 3 cut(s) 99, 102, 269
FspBI CTAG 3 cut(s) 209, 293, 378
GlaI GCGC 1 cut(s) 438
GluI GCNGC 3 cut(s) 99, 102, 269
GsuI CTGGAG 1 cut(s) 236
HaeII RGCGCY 1 cut(s) 440
HaeIII GGCC 4 cut(s) 30, 282, 314, 542
HgaI GACGC 1 cut(s) 221
HhaI GCGC 1 cut(s) 439
Hin1I GRCGYC 1 cut(s) 437
Hin1II CATG 1 cut(s) 186
Hin6I GCGC 1 cut(s) 437
HinP1I GCGC 1 cut(s) 437
HincII GTYRAC 2 cut(s) 469, 480
HindII GTYRAC 2 cut(s) 469, 480
HinfI GANTC 1 cut(s) 577
HpaI GTTAAC 1 cut(s) 469
HphI GGTGA 5 cut(s) 67, 73, 200, 454, 532
Hpy166II GTNNAC 4 cut(s) 142, 409, 469, 480
Hpy188I TCNGA 1 cut(s) 453
Hpy188III TCNNGA 4 cut(s) 34, 209, 223, 406
Hpy8I GTNNAC 4 cut(s) 142, 409, 469, 480
Hpy99I CGWCG 3 cut(s) 128, 329, 343
HpyAV CCTTC 2 cut(s) 79, 158
HpyCH4III ACNGT 4 cut(s) 13, 108, 386, 505
HpyCH4IV ACGT 4 cut(s) 138, 411, 494, 560
HpyCH4V TGCA 1 cut(s) 243
HpyF3I CTNAG 4 cut(s) 264, 288, 346, 359
HpySE526I ACGT 4 cut(s) 138, 411, 494, 560
Hsp92I GRCGYC 1 cut(s) 437
Hsp92II CATG 1 cut(s) 186
HspAI GCGC 1 cut(s) 437
KasI GGCGCC 1 cut(s) 436
KpnI GGTACC 1 cut(s) 358
KroI GCCGGC 1 cut(s) 542
KroNI GCCGGC 1 cut(s) 544
Ksp22I TGATCA 1 cut(s) 444
KspAI GTTAAC 1 cut(s) 469
Kzo9I GATC 3 cut(s) 6, 171, 444
LmnI GCTCC 1 cut(s) 557
Lsp1109I GCAGC 1 cut(s) 85
MaeI CTAG 3 cut(s) 209, 293, 378
MaeII ACGT 4 cut(s) 138, 411, 494, 560
MaeIII GTNAC 4 cut(s) 188, 362, 520, 556
MalI GATC 3 cut(s) 8, 173, 446
MboI GATC 3 cut(s) 6, 171, 444
MhlI GDGCHC 3 cut(s) 289, 347, 554
MluCI AATT 1 cut(s) 130
Mly113I GGCGCC 1 cut(s) 437
MmeI TCCRAC 1 cut(s) 405
MnlI CCTC 7 cut(s) 41, 52, 89, 127, 144, 161, 216
MroNI GCCGGC 1 cut(s) 542
MseI TTAA 1 cut(s) 468
MspR9I CCNGG 3 cut(s) 284, 311, 335
MvnI CGCG 1 cut(s) 215
NaeI GCCGGC 1 cut(s) 544
NarI GGCGCC 1 cut(s) 437
NciI CCSGG 3 cut(s) 284, 311, 335
NdeII GATC 3 cut(s) 6, 171, 444
NgoMIV GCCGGC 1 cut(s) 542
NlaIII CATG 1 cut(s) 186
NlaIV GGNNCC 3 cut(s) 204, 356, 438
NmuCI GTSAC 2 cut(s) 188, 520
PceI AGGCCT 1 cut(s) 30
PdiI GCCGGC 1 cut(s) 544
PfeI GAWTC 1 cut(s) 577
PkrI GCNGC 3 cut(s) 100, 103, 270
PluTI GGCGCC 1 cut(s) 440
PmaCI CACGTG 1 cut(s) 139
PmlI CACGTG 1 cut(s) 139
Ppu21I YACGTR 2 cut(s) 139, 561
Psp1406I AACGTT 1 cut(s) 411
PspCI CACGTG 1 cut(s) 139
PspN4I GGNNCC 3 cut(s) 204, 356, 438
PspPI GGNCC 1 cut(s) 280
RsaI GTAC 4 cut(s) 143, 356, 388, 514
RsaNI GTAC 4 cut(s) 142, 355, 387, 513
SaqAI TTAA 1 cut(s) 468
SatI GCNGC 3 cut(s) 99, 102, 269
Sau3AI GATC 3 cut(s) 6, 171, 444
Sau96I GGNCC 1 cut(s) 280
ScrFI CCNGG 3 cut(s) 284, 311, 335
SduI GDGCHC 3 cut(s) 289, 347, 554
SfoI GGCGCC 1 cut(s) 438
SgrAI CRCCGGYG 1 cut(s) 439
SmlI CTYRAG 3 cut(s) 24, 32, 223
SmoI CTYRAG 3 cut(s) 24, 32, 223
Sse9I AATT 1 cut(s) 130
SseBI AGGCCT 1 cut(s) 30
SsiI CCGC 3 cut(s) 102, 215, 268
SspDI GGCGCC 1 cut(s) 436
SspMI CTAG 3 cut(s) 209, 293, 378
StuI AGGCCT 1 cut(s) 30
StyD4I CCNGG 3 cut(s) 282, 309, 333
TaaI ACNGT 4 cut(s) 13, 108, 386, 505
TaiI ACGT 4 cut(s) 141, 414, 497, 563
TasI AATT 1 cut(s) 130
TatI WGTACW 1 cut(s) 141
TauI GCSGC 2 cut(s) 104, 271
TfiI GAWTC 1 cut(s) 577
Tru1I TTAA 1 cut(s) 468
Tru9I TTAA 1 cut(s) 468
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 2 cut(s) 188, 520
TseI GCWGC 1 cut(s) 98
Tsp45I GTSAC 2 cut(s) 188, 520
TspDTI ATGAA 3 cut(s) 61, 177, 590
TspGWI ACGGA 1 cut(s) 544
TspRI CASTG 1 cut(s) 18
XapI RAATTY 1 cut(s) 130
XbaI TCTAGA 1 cut(s) 208
XspI CTAG 3 cut(s) 209, 293, 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.