Rorug07G0051700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0015616
Physical Location & Seq
Reverse (-)
3706941 .. 3709534
2594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0051700.1

Sequence Viewer

Length: 1686 bp
ATGGTGAAGTTCAACCAGCGCTTCGACTACTACGAGCTCTTAGGCATCGAACCGGAAGACCTCTTAGACCTCGACCTCGATGACGCAGAACGCTATGTCGAAAAGGCTTACAAAGAAACGGCGAGGAGAATCCACCCGGACAAAGTCAGAGTCGCCGGCCTGAGCGAAGCCGAAGCCAAAGAGAAACAAGACGAAGCCACCGCAAAGTTCCAAGAGCTCCAAAAGGCCTACGACGTCATCAAAGACCCCATGCAGAGAGGCGACTATGACTTGTACCGCAAGAAAAACTTCACCCCGGAAACTTTCAAACCCAACCTCGTGCCCACCGAGGGCCTCAGATTCTCCGGCTACTCCAACGAGGGCCGGGGATTCTTCAAGGTGTACGGTGACGTTTTTGAGAAGATATACGCCAACGAGGTTGCTTTTCAAGAGGAGAAGAAGTTGCCGCCGGATTCAGTGATCAAGCCGCCGGAGATAGGGGACGAACACAGACCCTATCCGGCGGTGGTGCAGTTCTACAACTACTGGCTCAACTTTGGGACCATAATGGACTTCACGTGGGAGGATCCGCACGACGAGTACGACTTGGCGGCGGCGCCTACCAAGAAGGGAGTGGCGGTGATGCGGAGGAAGAACATAAAGGCCAGGAAGAGGGCTAAGAATGAGTATAATAATAAAGTGAGGAGGTTGGCGCAGAATGTGAGGAGGAGGGACATTAGGGTTTTGGAGATGATGGCGCACAGGGAGGAGGAGAGGAAGAAGGAGATGGAGGAGGAGAAGGAGAGGAGGAGGAGGTTGAAGAAGGAGAAGATGGAGAAGGCTTTGGAGTATGAGGAGCCGGAGTGGACGAAGCCGGTGGAGAGGAAGAGGAAGTATGGTGTGGAGGAGAAGGAGGAAGAGGAGAGGGAGGAATGGGAGTGCGTGGTGTGTAGGAAGGAGTTTAAGAGCGAGAAGCAGTGCTTGAATCACGAGATGTCGAAGAAGCATAGGGATATGGTAGCAGTATTGATGGGGTTGAAGCACCGCGATTTGGTTGAGGAGGTCTTGGAGTTGATGGAGGAGGAGGGAGATGAGGATAAGGAACCTGAGCATGATGGTGTAGATGAGGTTTTGGAGGGAGAAGGTGAAGAAGAAAGGGAGAGTGAGAGTGAAGATGAGGTATCCGAATGTGTTGATGAAAATCCGAAAGAAGAGGTTGGTGAAGAAGTTGTTGATGGTGATGAAGAGGAAGAAGAGGATAAGGAGGATGATGAGATGGAAGTTCTTGAAGCAATGGTGGCGAGGCGAAAGACTAGTGTAAAAGTTGGTGAACCAATTTTTGAGCCCATGGCAACCATCATTGATGTAGAGGAGGATGAGGTGGATATGGAGCACGAGGAGACAAAGAACATGGATGAGAATGGAGGAGAGAAGAAACAGAGGAGGAGGAGGAGTGTGAAGAGTACTAGAATCAATGAACATGATGATAAGAAGGAATCAAAATCAGATTCTAGTGCGGAATCTTGCGTTGACAATGGGAGTGAAGATGAGCAGAAGAGAAAGAAGGGAGGGAAGAAAGAGAAGAGGAGTAAAAGGAATACCAAAAGTAATGGTGAGAGTGAGGATTCTGGTGTAAAGAATTCCAAGTCTAGTAATAGGATAAGGTATGCAGGGAAGAAGAGTAGAGGTGATTTTGCCAAACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

561

Amino Acids

66.09

Weight (kDa)

5.04

Isoelectric Point (pI)

56.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 9 - 90 1.1e-10 DnaJ domain
ZUO1-like_ZHD PF21884 124 - 241 2.9e-14 Zuotin-like, zuotin homology domain
zf-C2H2_jaz PF12171 305 - 330 5.2e-06 Zinc-finger double-stranded RNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015616)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01760
malus_domestica MD00G1110200.v1.1 MD04G1064800.v1.1
prunus_persica Prupe.5G093100_v2.0.a1
pyrus_communis pycom04g05860 pycom06g07400
rosa_chinensis RchiOBHm_Chr7g0198961
rosa_laevigata RLG00000003829
rosa_multiflora Rmu_sc0006266.1_g000021
rosa_roxburghii Rroxscaffold_3G00257270
rosa_rugosa Rorug07G0051700
rosa_samantha Rh7AG174700 Rh7BG177900 Rh7CG183900 Rh7DG177300
rosa_wichuraiana Rw7G015320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 237
AccB1I GGYRCC 1 cut(s) 595
AccII CGCG 1 cut(s) 1026
AclWI GGATC 2 cut(s) 560, 573
AcsI RAATTY 1 cut(s) 1618
AcvI CACGTG 1 cut(s) 558
AcyI GRCGYC 2 cut(s) 234, 596
AfaI GTAC 4 cut(s) 275, 383, 581, 1444
AfeI AGCGCT 1 cut(s) 20
AfiI CCNNNNNNNGG 4 cut(s) 329, 476, 651, 1030
AgsI TTSAA 8 cut(s) 13, 307, 376, 428, 799, 964, 1018, 1268
AhlI ACTAGT 1 cut(s) 1292
AjnI CCWGG 1 cut(s) 644
AluBI AGCT 2 cut(s) 37, 217
AluI AGCT 2 cut(s) 37, 217
Alw21I GWGCWC 3 cut(s) 39, 219, 1374
Alw26I GTCTC 1 cut(s) 1373
AlwI GGATC 2 cut(s) 560, 573
Aor51HI AGCGCT 1 cut(s) 20
AoxI GGCC 5 cut(s) 157, 225, 331, 361, 642
ApoI RAATTY 1 cut(s) 1618
ArsI GACNNNNNNTTYG 2 cut(s) 135, 167
Asp700I GAANNNNTTC 1 cut(s) 287
AspLEI GCGC 4 cut(s) 21, 598, 694, 739
AspS9I GGNCC 3 cut(s) 331, 361, 540
AsuC2I CCSGG 3 cut(s) 137, 296, 365
AvaII GGWCC 1 cut(s) 540
BaeGI GKGCMC 1 cut(s) 324
BamHI GGATCC 1 cut(s) 565
BanI GGYRCC 1 cut(s) 595
BanII GRGCYC 3 cut(s) 39, 219, 1326
BauI CACGAG 3 cut(s) 317, 968, 1373
BbrPI CACGTG 1 cut(s) 558
BbsI GAAGAC 1 cut(s) 63
Bbv12I GWGCWC 3 cut(s) 39, 219, 1374
BccI CCATC 9 cut(s) 727, 760, 805, 1003, 1048, 1088, 1208, 1249, 1343
BceAI ACGGC 1 cut(s) 135
BciT130I CCWGG 1 cut(s) 646
BciVI GTATCC 1 cut(s) 1171
BclI TGATCA 1 cut(s) 459
BcnI CCSGG 3 cut(s) 137, 296, 365
BcoDI GTCTC 1 cut(s) 1373
BcuI ACTAGT 1 cut(s) 1292
BfaI CTAG 4 cut(s) 1293, 1446, 1491, 1629
BfoI RGCGCY 2 cut(s) 22, 599
BfuI GTATCC 1 cut(s) 1171
BisI GCNGC 4 cut(s) 446, 467, 591, 594
BlsI GCNGC 4 cut(s) 447, 468, 592, 595
BmcAI AGTACT 1 cut(s) 1444
Bme1390I CCNGG 4 cut(s) 137, 296, 365, 646
Bme18I GGWCC 1 cut(s) 540
BmgT120I GGNCC 3 cut(s) 331, 361, 540
BmiI GGNNCC 5 cut(s) 541, 567, 597, 837, 1083
BmrFI CCNGG 4 cut(s) 137, 296, 365, 646
BmsI GCATC 2 cut(s) 54, 612
BpiI GAAGAC 1 cut(s) 63
Bpu10I CCTNAGC 2 cut(s) 161, 1086
BpuMI CCSGG 3 cut(s) 137, 296, 365
BsaAI YACGTR 1 cut(s) 558
BsaBI GATNNNNATC 1 cut(s) 1179
BsaHI GRCGYC 2 cut(s) 234, 596
BsaJI CCNNGG 4 cut(s) 294, 327, 364, 1326
BsaWI WCCGGW 1 cut(s) 52
BsaXI ACNNNNNCTCC 8 cut(s) 425, 455, 603, 633, 827, 857, 1417, 1447
Bsc4I CCNNNNNNNGG 4 cut(s) 329, 476, 651, 1030
Bse118I RCCGGY 2 cut(s) 155, 853
Bse1I ACTGG 1 cut(s) 530
Bse3DI GCAATG 1 cut(s) 1278
Bse8I GATNNNNATC 1 cut(s) 1179
BseBI CCWGG 1 cut(s) 646
BseDI CCNNGG 4 cut(s) 294, 327, 364, 1326
BseGI GGATG 3 cut(s) 1252, 1360, 1399
BseJI GATNNNNATC 1 cut(s) 1179
BseLI CCNNNNNNNGG 4 cut(s) 329, 476, 651, 1030
BseMI GCAATG 1 cut(s) 1278
BseMII CTCAG 3 cut(s) 152, 349, 1077
BseNI ACTGG 1 cut(s) 530
BseSI GKGCMC 1 cut(s) 324
BsgI GTGCAG 1 cut(s) 530
Bsh1236I CGCG 1 cut(s) 1026
BshFI GGCC 5 cut(s) 159, 227, 333, 363, 644
BshNI GGYRCC 1 cut(s) 595
BsiHKAI GWGCWC 3 cut(s) 39, 219, 1374
BslFI GGGAC 3 cut(s) 494, 553, 725
BslI CCNNNNNNNGG 4 cut(s) 329, 476, 651, 1030
BsmAI GTCTC 1 cut(s) 1373
BsmFI GGGAC 3 cut(s) 494, 553, 725
BsnI GGCC 5 cut(s) 159, 227, 333, 363, 644
Bsp1286I GDGCHC 5 cut(s) 39, 219, 324, 1326, 1374
Bsp143I GATC 2 cut(s) 459, 565
Bsp19I CCATGG 1 cut(s) 1326
BspANI GGCC 5 cut(s) 159, 227, 333, 363, 644
BspCNI CTCAG 3 cut(s) 153, 348, 1078
BspFNI CGCG 1 cut(s) 1026
BspLI GGNNCC 5 cut(s) 541, 567, 597, 837, 1083
BspPI GGATC 2 cut(s) 560, 573
BspT107I GGYRCC 1 cut(s) 595
BsrDI GCAATG 1 cut(s) 1278
BsrFI RCCGGY 2 cut(s) 155, 853
BsrI ACTGG 1 cut(s) 530
BssAI RCCGGY 2 cut(s) 155, 853
BssECI CCNNGG 4 cut(s) 294, 327, 364, 1326
BssMI GATC 2 cut(s) 459, 565
BssNI GRCGYC 2 cut(s) 234, 596
BssSI CACGAG 3 cut(s) 317, 968, 1373
BssT1I CCWWGG 1 cut(s) 1326
Bst2BI CACGAG 3 cut(s) 317, 968, 1373
Bst2UI CCWGG 1 cut(s) 646
Bst4CI ACNGT 1 cut(s) 386
BstACI GRCGYC 2 cut(s) 234, 596
BstBAI YACGTR 1 cut(s) 558
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 6 cut(s) 40, 64, 161, 335, 657, 1086
BstDSI CCRYGG 1 cut(s) 1326
BstF5I GGATG 3 cut(s) 1252, 1360, 1399
BstFNI CGCG 1 cut(s) 1026
BstH2I RGCGCY 2 cut(s) 22, 599
BstHHI GCGC 4 cut(s) 21, 598, 694, 739
BstKTI GATC 2 cut(s) 462, 568
BstMAI GTCTC 1 cut(s) 1373
BstMBI GATC 2 cut(s) 459, 565
BstMWI GCNNNNNNNGC 1 cut(s) 1277
BstNI CCWGG 1 cut(s) 646
BstSCI CCNGG 4 cut(s) 135, 294, 363, 644
BstSLI GKGCMC 1 cut(s) 324
BstUI CGCG 1 cut(s) 1026
BstV2I GAAGAC 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 565
BstYI RGATCY 1 cut(s) 565
BsuI GTATCC 1 cut(s) 1171
BsuRI GGCC 5 cut(s) 159, 227, 333, 363, 644
BtgI CCRYGG 1 cut(s) 1326
BtsCI GGATG 3 cut(s) 1252, 1360, 1399
BtsI GCAGTG 1 cut(s) 962
BtsIMutI CAGTG 2 cut(s) 462, 962
Cac8I GCNNGC 1 cut(s) 157
CfoI GCGC 4 cut(s) 21, 598, 694, 739
Cfr10I RCCGGY 2 cut(s) 155, 853
Cfr13I GGNCC 3 cut(s) 331, 361, 540
CseI GACGC 1 cut(s) 92
Csp6I GTAC 4 cut(s) 274, 382, 580, 1443
CviAII CATG 5 cut(s) 250, 1091, 1327, 1390, 1460
CviQI GTAC 4 cut(s) 274, 382, 580, 1443
DdeI CTNAG 6 cut(s) 40, 64, 161, 335, 657, 1086
DinI GGCGCC 1 cut(s) 597
DpnI GATC 2 cut(s) 461, 567
DpnII GATC 2 cut(s) 459, 565
Ecl136II GAGCTC 2 cut(s) 37, 217
Eco130I CCWWGG 1 cut(s) 1326
Eco147I AGGCCT 1 cut(s) 227
Eco24I GRGCYC 3 cut(s) 39, 219, 1326
Eco47I GGWCC 1 cut(s) 540
Eco47III AGCGCT 1 cut(s) 20
Eco53kI GAGCTC 2 cut(s) 37, 217
Eco72I CACGTG 1 cut(s) 558
EcoICRI GAGCTC 2 cut(s) 37, 217
EcoO109I RGGNCCY 1 cut(s) 331
EcoRI GAATTC 1 cut(s) 1618
EcoRII CCWGG 1 cut(s) 644
EcoT14I CCWWGG 1 cut(s) 1326
EcoT38I GRGCYC 3 cut(s) 39, 219, 1326
EgeI GGCGCC 1 cut(s) 597
EheI GGCGCC 1 cut(s) 597
ErhI CCWWGG 1 cut(s) 1326
FaeI CATG 5 cut(s) 253, 1094, 1330, 1393, 1463
FalI AAGNNNNNCTT 4 cut(s) 272, 304, 944, 976
FaqI GGGAC 3 cut(s) 494, 553, 725
FatI CATG 5 cut(s) 249, 1090, 1326, 1389, 1459
FbaI TGATCA 1 cut(s) 459
Fnu4HI GCNGC 4 cut(s) 446, 467, 591, 594
FokI GGATG 3 cut(s) 1259, 1367, 1406
FriOI GRGCYC 3 cut(s) 39, 219, 1326
Fsp4HI GCNGC 4 cut(s) 446, 467, 591, 594
FspBI CTAG 4 cut(s) 1293, 1446, 1491, 1629
GlaI GCGC 4 cut(s) 20, 597, 693, 738
GluI GCNGC 4 cut(s) 446, 467, 591, 594
HaeII RGCGCY 2 cut(s) 22, 599
HaeIII GGCC 5 cut(s) 159, 227, 333, 363, 644
HgaI GACGC 1 cut(s) 92
HhaI GCGC 4 cut(s) 21, 598, 694, 739
Hin1I GRCGYC 2 cut(s) 234, 596
Hin1II CATG 5 cut(s) 253, 1094, 1330, 1393, 1463
Hin6I GCGC 4 cut(s) 19, 596, 692, 737
HinP1I GCGC 4 cut(s) 19, 596, 692, 737
HincII GTYRAC 1 cut(s) 1510
HindII GTYRAC 1 cut(s) 1510
Hpy166II GTNNAC 4 cut(s) 382, 846, 1310, 1510
Hpy188I TCNGA 5 cut(s) 149, 338, 1165, 1185, 1486
Hpy188III TCNNGA 3 cut(s) 428, 968, 1265
Hpy8I GTNNAC 4 cut(s) 382, 846, 1310, 1510
Hpy99I CGWCG 2 cut(s) 236, 578
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4IV ACGT 3 cut(s) 234, 390, 557
HpyCH4V TGCA 3 cut(s) 253, 511, 1649
HpyF10VI GCNNNNNNNGC 1 cut(s) 1277
HpyF3I CTNAG 6 cut(s) 40, 64, 161, 335, 657, 1086
HpySE526I ACGT 3 cut(s) 234, 390, 557
Hsp92I GRCGYC 2 cut(s) 234, 596
Hsp92II CATG 5 cut(s) 253, 1094, 1330, 1393, 1463
HspAI GCGC 4 cut(s) 19, 596, 692, 737
KasI GGCGCC 1 cut(s) 595
KroI GCCGGC 1 cut(s) 155
KroNI GCCGGC 1 cut(s) 157
Ksp22I TGATCA 1 cut(s) 459
Kzo9I GATC 2 cut(s) 459, 565
LmnI GCTCC 3 cut(s) 222, 835, 1369
LweI GCATC 2 cut(s) 54, 612
MaeI CTAG 4 cut(s) 1293, 1446, 1491, 1629
MaeII ACGT 3 cut(s) 234, 390, 557
MaeIII GTNAC 1 cut(s) 386
MalI GATC 2 cut(s) 461, 567
MboI GATC 2 cut(s) 459, 565
MflI RGATCY 1 cut(s) 565
MhlI GDGCHC 5 cut(s) 39, 219, 324, 1326, 1374
MluCI AATT 2 cut(s) 1314, 1618
Mly113I GGCGCC 1 cut(s) 596
MlyI GAGTC 1 cut(s) 159
MmeI TCCRAC 1 cut(s) 378
MroNI GCCGGC 1 cut(s) 155
MroXI GAANNNNTTC 1 cut(s) 287
MseI TTAA 2 cut(s) 942, 1684
MslI CAYNNNNRTG 1 cut(s) 1095
MspR9I CCNGG 4 cut(s) 137, 296, 365, 646
MvaI CCWGG 1 cut(s) 646
MvnI CGCG 1 cut(s) 1026
MwoI GCNNNNNNNGC 1 cut(s) 1277
NaeI GCCGGC 1 cut(s) 157
NarI GGCGCC 1 cut(s) 596
NciI CCSGG 3 cut(s) 137, 296, 365
NcoI CCATGG 1 cut(s) 1326
NdeII GATC 2 cut(s) 459, 565
NgoMIV GCCGGC 1 cut(s) 155
NlaIII CATG 5 cut(s) 253, 1094, 1330, 1393, 1463
NlaIV GGNNCC 5 cut(s) 541, 567, 597, 837, 1083
NmuCI GTSAC 1 cut(s) 386
PceI AGGCCT 1 cut(s) 227
PcsI WCGNNNNNNNCGW 3 cut(s) 30, 324, 579
PdiI GCCGGC 1 cut(s) 157
PdmI GAANNNNTTC 1 cut(s) 287
PflFI GACNNNGTC 1 cut(s) 143
PkrI GCNGC 4 cut(s) 447, 468, 592, 595
PleI GAGTC 1 cut(s) 158
PluTI GGCGCC 1 cut(s) 599
PmaCI CACGTG 1 cut(s) 558
PmlI CACGTG 1 cut(s) 558
PpsI GAGTC 1 cut(s) 158
Ppu21I YACGTR 1 cut(s) 558
Psp124BI GAGCTC 2 cut(s) 39, 219
Psp6I CCWGG 1 cut(s) 644
PspCI CACGTG 1 cut(s) 558
PspGI CCWGG 1 cut(s) 644
PspN4I GGNNCC 5 cut(s) 541, 567, 597, 837, 1083
PspPI GGNCC 3 cut(s) 331, 361, 540
PsuI RGATCY 1 cut(s) 565
PsyI GACNNNGTC 1 cut(s) 143
RsaI GTAC 4 cut(s) 275, 383, 581, 1444
RsaNI GTAC 4 cut(s) 274, 382, 580, 1443
RseI CAYNNNNRTG 1 cut(s) 1095
SacI GAGCTC 2 cut(s) 39, 219
SaqAI TTAA 2 cut(s) 942, 1684
SatI GCNGC 4 cut(s) 446, 467, 591, 594
Sau3AI GATC 2 cut(s) 459, 565
Sau96I GGNCC 3 cut(s) 331, 361, 540
ScaI AGTACT 1 cut(s) 1444
SchI GAGTC 1 cut(s) 159
ScrFI CCNGG 4 cut(s) 137, 296, 365, 646
SduI GDGCHC 5 cut(s) 39, 219, 324, 1326, 1374
SfaNI GCATC 2 cut(s) 54, 612
SfoI GGCGCC 1 cut(s) 597
SinI GGWCC 1 cut(s) 540
SmiMI CAYNNNNRTG 1 cut(s) 1095
SpeI ACTAGT 1 cut(s) 1292
Sse9I AATT 2 cut(s) 1314, 1618
SseBI AGGCCT 1 cut(s) 227
SspDI GGCGCC 1 cut(s) 595
SspMI CTAG 4 cut(s) 1293, 1446, 1491, 1629
SstI GAGCTC 2 cut(s) 39, 219
StuI AGGCCT 1 cut(s) 227
StyD4I CCNGG 4 cut(s) 135, 294, 363, 644
StyI CCWWGG 1 cut(s) 1326
TaaI ACNGT 1 cut(s) 386
TaiI ACGT 3 cut(s) 237, 393, 560
TaqI TCGA 6 cut(s) 24, 48, 72, 78, 99, 977
TasI AATT 2 cut(s) 1314, 1618
TatI WGTACW 1 cut(s) 1442
TauI GCSGC 4 cut(s) 448, 469, 593, 596
Tru1I TTAA 2 cut(s) 942, 1684
Tru9I TTAA 2 cut(s) 942, 1684
TscAI CASTG 2 cut(s) 462, 962
TseFI GTSAC 1 cut(s) 386
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 3 cut(s) 1191, 1236, 1470
TspRI CASTG 2 cut(s) 462, 962
Tth111I GACNNNGTC 1 cut(s) 143
VpaK11BI GGWCC 1 cut(s) 540
XapI RAATTY 1 cut(s) 1618
XcmI CCANNNNNNNNNTGG 1 cut(s) 610
XmnI GAANNNNTTC 1 cut(s) 287
XspI CTAG 4 cut(s) 1293, 1446, 1491, 1629
ZraI GACGTC 1 cut(s) 235
ZrmI AGTACT 1 cut(s) 1444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.