Prupe.5G093100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0015616
Physical Location & Seq
Reverse (-)
10325598 .. 10327815
2218 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G093100.1

Sequence Viewer

Length: 639 bp
ATGAAGATGGAGATCACAGTGATATCAGCCCAAGGCCTCAAAACCACCTCCCCTACTACGTTCTCAAACAAGATCAGAACCTTCATTACCCTCACCACCACCAACGGTGATCACAAGTGCCACGTGTACAGCACAGGGGTGGATGATGAAGGAGGTATCAACCCTACATGGGGTGACAAATTTCATGTCCCTGTGGACACAAGTTTCTTCACAAACAGGTACTCTTGCATATATCTGCAGCTTTACAGCAAGCGGCTCATAATGGGCCGGACCCAGTTGGGCTGGTGCCAAATCTCTGCTCAAGATATTGGGTTTCCGCCGGCCGGTTCAGCACGGTACTTGAGTTACCGGCTACGGGCTAGAGACGGTTCCAGGACCAATGGGATTGTGAACCTTTCTGTGAAGTTGGAAAATTTGGGTCCGGTCAGCGGTCATGGGCAAACAAACTCCGTCAATGCGCCAGCATTTGGCATGTGTGGCACTGGCACAGTCATTGGTACGCCGGTGACAGCTCTACTGCCCCCTTTGGGTGAGTGCTCTGTGAATTGTGAAGGGCAGTTAGATCACGTGGGTTTTGGTTGCAAAGAGGCACATAGATGGGCCACGTGTGATTCTGAAGGGCACCCTTCCAGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

213

Amino Acids

22.96

Weight (kDa)

8.43

Isoelectric Point (pI)

29.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015616)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01760
malus_domestica MD00G1110200.v1.1 MD04G1064800.v1.1
prunus_persica Prupe.5G093100_v2.0.a1
pyrus_communis pycom04g05860 pycom06g07400
rosa_chinensis RchiOBHm_Chr7g0198961
rosa_laevigata RLG00000003829
rosa_multiflora Rmu_sc0006266.1_g000021
rosa_roxburghii Rroxscaffold_3G00257270
rosa_rugosa Rorug07G0051700
rosa_samantha Rh7AG174700 Rh7BG177900 Rh7CG183900 Rh7DG177300
rosa_wichuraiana Rw7G015320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 285, 621
AccB7I CCANNNNNTGG 1 cut(s) 467
AciI CCGC 3 cut(s) 253, 317, 429
AcoI YGGCCR 1 cut(s) 321
AcsI RAATTY 2 cut(s) 179, 412
AcuI CTGAAG 1 cut(s) 636
AcvI CACGTG 3 cut(s) 124, 568, 606
AfaI GTAC 4 cut(s) 128, 221, 338, 499
AfiI CCNNNNNNNGG 7 cut(s) 169, 170, 323, 355, 428, 467, 527
AflIII ACRYGT 2 cut(s) 123, 605
AjnI CCWGG 1 cut(s) 371
AleI CACNNNNGTG 1 cut(s) 137
AluBI AGCT 2 cut(s) 241, 512
AluI AGCT 2 cut(s) 241, 512
Alw21I GWGCWC 1 cut(s) 539
Alw26I GTCTC 1 cut(s) 357
AoxI GGCC 4 cut(s) 34, 265, 321, 600
ApeKI GCWGC 1 cut(s) 238
ApoI RAATTY 2 cut(s) 179, 412
ArsI GACNNNNNNTTYG 2 cut(s) 171, 203
AspLEI GCGC 1 cut(s) 460
AspS9I GGNCC 5 cut(s) 265, 270, 375, 419, 600
AsuHPI GGTGA 5 cut(s) 85, 119, 185, 517, 542
AvaII GGWCC 3 cut(s) 270, 375, 419
BaeGI GKGCMC 1 cut(s) 624
BaeI ACNNNNGTAYC 4 cut(s) 328, 361, 489, 522
BanI GGYRCC 2 cut(s) 285, 621
BbrPI CACGTG 3 cut(s) 124, 568, 606
Bbv12I GWGCWC 1 cut(s) 539
BbvI GCAGC 1 cut(s) 250
BccI CCATC 1 cut(s) 591
BciT130I CCWGG 1 cut(s) 373
BclI TGATCA 1 cut(s) 109
BcoDI GTCTC 1 cut(s) 357
BfaI CTAG 1 cut(s) 360
BfmI CTRYAG 1 cut(s) 236
BisI GCNGC 2 cut(s) 239, 254
BlsI GCNGC 2 cut(s) 240, 255
Bme1390I CCNGG 1 cut(s) 373
Bme18I GGWCC 3 cut(s) 270, 375, 419
BmgT120I GGNCC 5 cut(s) 265, 270, 375, 419, 600
BmiI GGNNCC 5 cut(s) 272, 287, 370, 420, 623
BmrFI CCNGG 1 cut(s) 373
BmrI ACTGGG 1 cut(s) 268
BmuI ACTGGG 1 cut(s) 268
BpuEI CTTGAG 2 cut(s) 285, 361
BsaAI YACGTR 3 cut(s) 124, 568, 606
BsaBI GATNNNNATC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 31
BsaWI WCCGGW 1 cut(s) 421
Bsc4I CCNNNNNNNGG 7 cut(s) 169, 170, 323, 355, 428, 467, 527
Bse118I RCCGGY 4 cut(s) 319, 323, 348, 502
Bse1I ACTGG 2 cut(s) 274, 487
Bse8I GATNNNNATC 1 cut(s) 11
BseBI CCWGG 1 cut(s) 373
BseDI CCNNGG 1 cut(s) 31
BseGI GGATG 1 cut(s) 148
BseJI GATNNNNATC 1 cut(s) 11
BseLI CCNNNNNNNGG 7 cut(s) 169, 170, 323, 355, 428, 467, 527
BseNI ACTGG 2 cut(s) 274, 487
BseSI GKGCMC 1 cut(s) 624
BseX3I CGGCCG 1 cut(s) 321
BseXI GCAGC 1 cut(s) 250
Bsh1285I CGRYCG 1 cut(s) 324
BshFI GGCC 4 cut(s) 36, 267, 323, 602
BshNI GGYRCC 2 cut(s) 285, 621
BsiEI CGRYCG 1 cut(s) 324
BsiHKAI GWGCWC 1 cut(s) 539
BsiSI CCGG 6 cut(s) 268, 320, 324, 349, 422, 503
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 7 cut(s) 169, 170, 323, 355, 428, 467, 527
BsmAI GTCTC 1 cut(s) 357
BsmBI CGTCTC 1 cut(s) 357
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 4 cut(s) 36, 267, 323, 602
Bsp1286I GDGCHC 2 cut(s) 539, 624
Bsp1407I TGTACA 1 cut(s) 126
Bsp143I GATC 4 cut(s) 12, 72, 109, 562
BspACI CCGC 3 cut(s) 253, 317, 429
BspANI GGCC 4 cut(s) 36, 267, 323, 602
BspLI GGNNCC 5 cut(s) 272, 287, 370, 420, 623
BspMAI CTGCAG 1 cut(s) 240
BspT107I GGYRCC 2 cut(s) 285, 621
BsrFI RCCGGY 4 cut(s) 319, 323, 348, 502
BsrGI TGTACA 1 cut(s) 126
BsrI ACTGG 2 cut(s) 274, 487
BssAI RCCGGY 4 cut(s) 319, 323, 348, 502
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 4 cut(s) 12, 72, 109, 562
BssT1I CCWWGG 1 cut(s) 31
Bst2UI CCWGG 1 cut(s) 373
Bst4CI ACNGT 5 cut(s) 19, 107, 336, 368, 490
BstAUI TGTACA 1 cut(s) 126
BstBAI YACGTR 3 cut(s) 124, 568, 606
BstC8I GCNNGC 3 cut(s) 251, 321, 462
BstF5I GGATG 1 cut(s) 148
BstHHI GCGC 1 cut(s) 460
BstKTI GATC 4 cut(s) 15, 75, 112, 565
BstMAI GTCTC 1 cut(s) 357
BstMBI GATC 4 cut(s) 12, 72, 109, 562
BstMCI CGRYCG 1 cut(s) 324
BstMWI GCNNNNNNNGC 2 cut(s) 329, 477
BstNI CCWGG 1 cut(s) 373
BstNSI RCATGY 1 cut(s) 475
BstSCI CCNGG 1 cut(s) 371
BstSFI CTRYAG 1 cut(s) 236
BstSLI GKGCMC 1 cut(s) 624
BstV1I GCAGC 1 cut(s) 250
BstZI CGGCCG 1 cut(s) 321
BsuRI GGCC 4 cut(s) 36, 267, 323, 602
BtsCI GGATG 1 cut(s) 148
BtsIMutI CAGTG 2 cut(s) 24, 480
Cac8I GCNNGC 3 cut(s) 251, 321, 462
CfoI GCGC 1 cut(s) 460
Cfr10I RCCGGY 4 cut(s) 319, 323, 348, 502
Cfr13I GGNCC 5 cut(s) 265, 270, 375, 419, 600
Csp6I GTAC 4 cut(s) 127, 220, 337, 498
CviAII CATG 4 cut(s) 168, 185, 434, 472
CviQI GTAC 4 cut(s) 127, 220, 337, 498
DpnI GATC 4 cut(s) 14, 74, 111, 564
DpnII GATC 4 cut(s) 12, 72, 109, 562
EaeI YGGCCR 1 cut(s) 321
EagI CGGCCG 1 cut(s) 321
EciI GGCGGA 1 cut(s) 306
EclXI CGGCCG 1 cut(s) 321
Eco130I CCWWGG 1 cut(s) 31
Eco147I AGGCCT 1 cut(s) 36
Eco32I GATATC 1 cut(s) 24
Eco47I GGWCC 3 cut(s) 270, 375, 419
Eco52I CGGCCG 1 cut(s) 321
Eco57I CTGAAG 1 cut(s) 636
Eco72I CACGTG 3 cut(s) 124, 568, 606
EcoRII CCWGG 1 cut(s) 371
EcoRV GATATC 1 cut(s) 24
EcoT14I CCWWGG 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 31
Esp3I CGTCTC 1 cut(s) 357
FaeI CATG 4 cut(s) 171, 188, 437, 475
FaiI YATR 8 cut(s) 169, 186, 230, 232, 260, 435, 473, 594
FaqI GGGAC 1 cut(s) 173
FatI CATG 4 cut(s) 167, 184, 433, 471
FbaI TGATCA 1 cut(s) 109
Fnu4HI GCNGC 2 cut(s) 239, 254
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 2 cut(s) 239, 254
FspBI CTAG 1 cut(s) 360
GlaI GCGC 1 cut(s) 459
GluI GCNGC 2 cut(s) 239, 254
HaeIII GGCC 4 cut(s) 36, 267, 323, 602
HapII CCGG 6 cut(s) 268, 320, 324, 349, 422, 503
HhaI GCGC 1 cut(s) 460
Hin1II CATG 4 cut(s) 171, 188, 437, 475
Hin6I GCGC 1 cut(s) 458
HinP1I GCGC 1 cut(s) 458
HinfI GANTC 1 cut(s) 611
HpaII CCGG 6 cut(s) 268, 320, 324, 349, 422, 503
HphI GGTGA 5 cut(s) 85, 119, 185, 517, 542
Hpy166II GTNNAC 3 cut(s) 127, 196, 391
Hpy188I TCNGA 2 cut(s) 77, 616
Hpy188III TCNNGA 2 cut(s) 302, 630
Hpy8I GTNNAC 3 cut(s) 127, 196, 391
HpyAV CCTTC 5 cut(s) 91, 143, 545, 611, 636
HpyCH4III ACNGT 5 cut(s) 19, 107, 336, 368, 490
HpyCH4IV ACGT 4 cut(s) 59, 123, 567, 605
HpyCH4V TGCA 3 cut(s) 228, 238, 582
HpyF10VI GCNNNNNNNGC 2 cut(s) 329, 477
HpySE526I ACGT 4 cut(s) 59, 123, 567, 605
Hsp92II CATG 4 cut(s) 171, 188, 437, 475
HspAI GCGC 1 cut(s) 458
KroI GCCGGC 1 cut(s) 319
KroNI GCCGGC 1 cut(s) 321
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 4 cut(s) 12, 72, 109, 562
Lsp1109I GCAGC 1 cut(s) 250
MaeI CTAG 1 cut(s) 360
MaeII ACGT 4 cut(s) 59, 123, 567, 605
MaeIII GTNAC 3 cut(s) 173, 344, 505
MalI GATC 4 cut(s) 14, 74, 111, 564
MboI GATC 4 cut(s) 12, 72, 109, 562
MboII GAAGA 2 cut(s) 16, 199
MhlI GDGCHC 2 cut(s) 539, 624
MluCI AATT 4 cut(s) 179, 412, 544, 634
MmeI TCCRAC 1 cut(s) 387
MnlI CCTC 5 cut(s) 47, 58, 101, 146, 580
MroNI GCCGGC 1 cut(s) 319
MslI CAYNNNNRTG 2 cut(s) 137, 595
MspA1I CMGCKG 1 cut(s) 429
MspI CCGG 6 cut(s) 268, 320, 324, 349, 422, 503
MspR9I CCNGG 1 cut(s) 373
MvaI CCWGG 1 cut(s) 373
MwoI GCNNNNNNNGC 2 cut(s) 329, 477
NaeI GCCGGC 1 cut(s) 321
NdeII GATC 4 cut(s) 12, 72, 109, 562
NgoMIV GCCGGC 1 cut(s) 319
NlaIII CATG 4 cut(s) 171, 188, 437, 475
NlaIV GGNNCC 5 cut(s) 272, 287, 370, 420, 623
NmuCI GTSAC 2 cut(s) 173, 505
NspI RCATGY 1 cut(s) 475
OliI CACNNNNGTG 1 cut(s) 137
PceI AGGCCT 1 cut(s) 36
PdiI GCCGGC 1 cut(s) 321
PfeI GAWTC 1 cut(s) 611
PflMI CCANNNNNTGG 1 cut(s) 467
PfoI TCCNGGA 1 cut(s) 371
PkrI GCNGC 2 cut(s) 240, 255
PmaCI CACGTG 3 cut(s) 124, 568, 606
PmlI CACGTG 3 cut(s) 124, 568, 606
Ppu21I YACGTR 3 cut(s) 124, 568, 606
Psp6I CCWGG 1 cut(s) 371
PspCI CACGTG 3 cut(s) 124, 568, 606
PspGI CCWGG 1 cut(s) 371
PspN4I GGNNCC 5 cut(s) 272, 287, 370, 420, 623
PspPI GGNCC 5 cut(s) 265, 270, 375, 419, 600
PsrI GAACNNNNNNTAC 2 cut(s) 70, 102
PstI CTGCAG 1 cut(s) 240
RsaI GTAC 4 cut(s) 128, 221, 338, 499
RsaNI GTAC 4 cut(s) 127, 220, 337, 498
RseI CAYNNNNRTG 2 cut(s) 137, 595
SatI GCNGC 2 cut(s) 239, 254
Sau3AI GATC 4 cut(s) 12, 72, 109, 562
Sau96I GGNCC 5 cut(s) 265, 270, 375, 419, 600
ScrFI CCNGG 1 cut(s) 373
SduI GDGCHC 2 cut(s) 539, 624
SfcI CTRYAG 1 cut(s) 236
SgrAI CRCCGGYG 1 cut(s) 502
SinI GGWCC 3 cut(s) 270, 375, 419
SmiMI CAYNNNNRTG 2 cut(s) 137, 595
SmlI CTYRAG 2 cut(s) 300, 340
SmoI CTYRAG 2 cut(s) 300, 340
Sse9I AATT 4 cut(s) 179, 412, 544, 634
SseBI AGGCCT 1 cut(s) 36
SsiI CCGC 3 cut(s) 253, 317, 429
SspMI CTAG 1 cut(s) 360
StuI AGGCCT 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 371
StyI CCWWGG 1 cut(s) 31
TaaI ACNGT 5 cut(s) 19, 107, 336, 368, 490
TaiI ACGT 4 cut(s) 62, 126, 570, 608
TasI AATT 4 cut(s) 179, 412, 544, 634
TatI WGTACW 1 cut(s) 126
TauI GCSGC 1 cut(s) 256
TfiI GAWTC 1 cut(s) 611
TscAI CASTG 2 cut(s) 24, 487
TseFI GTSAC 2 cut(s) 173, 505
TseI GCWGC 1 cut(s) 238
Tsp45I GTSAC 2 cut(s) 173, 505
TspDTI ATGAA 4 cut(s) 17, 73, 162, 173
TspGWI ACGGA 1 cut(s) 439
TspRI CASTG 2 cut(s) 24, 487
Van91I CCANNNNNTGG 1 cut(s) 467
VpaK11BI GGWCC 3 cut(s) 270, 375, 419
XapI RAATTY 2 cut(s) 179, 412
XceI RCATGY 1 cut(s) 475
XspI CTAG 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.