Rh7CG183900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0015616
Physical Location & Seq
Forward (+)
16051436 .. 16052086
651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG183900.1

Sequence Viewer

Length: 651 bp
ATGAAGCACAGCAACCAACCAGTAATGGAGATCACAGTGATATCAGCTCAAGGCCTCAAGAACTCTTCTCACTTTTCCCAGAAGATTAGACCCTTTATCACCCTCACCACTACTCCACCGGCTGCCACACCATGCCAGTCCTCCGGCGACGAGAAGTGCCACTTGTACAAAACGAGGGTGGATGATGAAGGTGGGATCAACCCAACATGGGGTGACAAGTTCTTGGTTCCTCTGGATGCTAATTTCGTTAGCAACAGGTATTCTTGCATATATCTCCAGCTTTACACTAAGCGGCTCATAATGGGCCGGGCTCAGCTGGGCTGGTGCCAAATCCCGGCGTATGATTTTGTCGGGTTCCCAGCGACGGGCTCGGTCCGGTACCTGAGTTACCGGCTACGGGCTAGGGACGGTACGAGGACTCATGGGGTTGTGAACGTGGCTATCAAGTTGGAGAATTTGGCGCCGGTAAGCAATCAGAGGGTGGTGTCAGTAAACTCTAACTCATCGACATTTGACACGTGTGGCACGGTTATTGGTACGCCGGTGGCACAGCTATCACCTTTGGCGGGTGAGTGCTCCGTTACGTGTCAGGGGCAGATAAGTCGCTTTGGTTTTGGTTGTAAAGAGGGAAATAGATGGAGTCATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

216

Amino Acids

23.72

Weight (kDa)

9.19

Isoelectric Point (pI)

31.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 9 - 113 9.6e-08 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015616)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01760
malus_domestica MD00G1110200.v1.1 MD04G1064800.v1.1
prunus_persica Prupe.5G093100_v2.0.a1
pyrus_communis pycom04g05860 pycom06g07400
rosa_chinensis RchiOBHm_Chr7g0198961
rosa_laevigata RLG00000003829
rosa_multiflora Rmu_sc0006266.1_g000021
rosa_roxburghii Rroxscaffold_3G00257270
rosa_rugosa Rorug07G0051700
rosa_samantha Rh7AG174700 Rh7BG177900 Rh7CG183900 Rh7DG177300
rosa_wichuraiana Rw7G015320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 378
AccB1I GGYRCC 3 cut(s) 324, 378, 460
AciI CCGC 2 cut(s) 292, 566
AclWI GGATC 1 cut(s) 203
AcsI RAATTY 1 cut(s) 454
AcvI CACGTG 1 cut(s) 519
AcyI GRCGYC 1 cut(s) 461
AfaI GTAC 4 cut(s) 167, 380, 412, 538
AfiI CCNNNNNNNGG 7 cut(s) 208, 209, 334, 364, 365, 397, 566
AflIII ACRYGT 3 cut(s) 516, 518, 584
AluBI AGCT 4 cut(s) 47, 280, 316, 553
AluI AGCT 4 cut(s) 47, 280, 316, 553
Alw21I GWGCWC 1 cut(s) 578
AlwI GGATC 1 cut(s) 203
AoxI GGCC 2 cut(s) 52, 304
ApeKI GCWGC 1 cut(s) 122
ApoI RAATTY 1 cut(s) 454
Asp718I GGTACC 1 cut(s) 378
AspLEI GCGC 1 cut(s) 463
AspS9I GGNCC 2 cut(s) 304, 373
AsuC2I CCSGG 2 cut(s) 308, 335
AsuHPI GGTGA 5 cut(s) 91, 97, 224, 549, 581
AvaII GGWCC 1 cut(s) 373
BaeI ACNNNNGTAYC 4 cut(s) 370, 403, 528, 561
BanI GGYRCC 3 cut(s) 324, 378, 460
BanII GRGCYC 2 cut(s) 313, 371
BbrPI CACGTG 1 cut(s) 519
Bbv12I GWGCWC 1 cut(s) 578
BbvI GCAGC 1 cut(s) 109
BccI CCATC 1 cut(s) 630
BcgI CGANNNNNNTGC 2 cut(s) 584, 618
BcnI CCSGG 2 cut(s) 308, 335
BfaI CTAG 1 cut(s) 402
BfoI RGCGCY 1 cut(s) 464
BisI GCNGC 2 cut(s) 123, 293
BlpI GCTNAGC 1 cut(s) 312
BlsI GCNGC 2 cut(s) 124, 294
Bme1390I CCNGG 2 cut(s) 308, 335
Bme18I GGWCC 1 cut(s) 373
BmgT120I GGNCC 2 cut(s) 304, 373
BmiI GGNNCC 5 cut(s) 228, 326, 356, 380, 462
BmrFI CCNGG 2 cut(s) 308, 335
BmsI GCATC 1 cut(s) 226
BpmI CTGGAG 1 cut(s) 260
Bpu1102I GCTNAGC 1 cut(s) 312
BpuEI CTTGAG 2 cut(s) 33, 41
BpuMI CCSGG 2 cut(s) 308, 335
BsaAI YACGTR 2 cut(s) 519, 585
BsaHI GRCGYC 1 cut(s) 461
BsaWI WCCGGW 1 cut(s) 375
BsaXI ACNNNNNCTCC 2 cut(s) 97, 127
Bsc4I CCNNNNNNNGG 7 cut(s) 208, 209, 334, 364, 365, 397, 566
Bse118I RCCGGY 4 cut(s) 118, 390, 463, 541
Bse1I ACTGG 2 cut(s) 20, 136
BseGI GGATG 2 cut(s) 187, 241
BseLI CCNNNNNNNGG 7 cut(s) 208, 209, 334, 364, 365, 397, 566
BseMII CTCAG 2 cut(s) 326, 374
BseNI ACTGG 2 cut(s) 20, 136
BseXI GCAGC 1 cut(s) 109
BseYI CCCAGC 2 cut(s) 316, 358
BshFI GGCC 2 cut(s) 54, 306
BshNI GGYRCC 3 cut(s) 324, 378, 460
BsiHKAI GWGCWC 1 cut(s) 578
BsiSI CCGG 8 cut(s) 119, 144, 307, 335, 376, 391, 464, 542
BslFI GGGAC 1 cut(s) 419
BslI CCNNNNNNNGG 7 cut(s) 208, 209, 334, 364, 365, 397, 566
BsmFI GGGAC 1 cut(s) 419
BsnI GGCC 2 cut(s) 54, 306
Bsp1286I GDGCHC 3 cut(s) 313, 371, 578
Bsp1407I TGTACA 1 cut(s) 165
Bsp143I GATC 2 cut(s) 30, 195
Bsp1720I GCTNAGC 1 cut(s) 312
BspACI CCGC 2 cut(s) 292, 566
BspANI GGCC 2 cut(s) 54, 306
BspCNI CTCAG 2 cut(s) 325, 375
BspLI GGNNCC 5 cut(s) 228, 326, 356, 380, 462
BspPI GGATC 1 cut(s) 203
BspT107I GGYRCC 3 cut(s) 324, 378, 460
BsrFI RCCGGY 4 cut(s) 118, 390, 463, 541
BsrGI TGTACA 1 cut(s) 165
BsrI ACTGG 2 cut(s) 20, 136
BssAI RCCGGY 4 cut(s) 118, 390, 463, 541
BssMI GATC 2 cut(s) 30, 195
BssNI GRCGYC 1 cut(s) 461
Bst4CI ACNGT 3 cut(s) 37, 410, 529
Bst6I CTCTTC 1 cut(s) 70
BstACI GRCGYC 1 cut(s) 461
BstAUI TGTACA 1 cut(s) 165
BstBAI YACGTR 2 cut(s) 519, 585
BstDEI CTNAG 3 cut(s) 288, 312, 383
BstF5I GGATG 2 cut(s) 187, 241
BstH2I RGCGCY 1 cut(s) 464
BstHHI GCGC 1 cut(s) 463
BstKTI GATC 2 cut(s) 33, 198
BstMBI GATC 2 cut(s) 30, 195
BstSCI CCNGG 2 cut(s) 306, 333
BstV1I GCAGC 1 cut(s) 109
BsuRI GGCC 2 cut(s) 54, 306
BtsCI GGATG 2 cut(s) 187, 241
BtsIMutI CAGTG 1 cut(s) 42
CfoI GCGC 1 cut(s) 463
Cfr10I RCCGGY 4 cut(s) 118, 390, 463, 541
Cfr13I GGNCC 2 cut(s) 304, 373
CpoI CGGWCCG 1 cut(s) 373
Csp6I GTAC 4 cut(s) 166, 379, 411, 537
CspI CGGWCCG 1 cut(s) 373
CviAII CATG 4 cut(s) 132, 207, 422, 644
CviQI GTAC 4 cut(s) 166, 379, 411, 537
DdeI CTNAG 3 cut(s) 288, 312, 383
DinI GGCGCC 1 cut(s) 462
DpnI GATC 2 cut(s) 32, 197
DpnII GATC 2 cut(s) 30, 195
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
Eco147I AGGCCT 1 cut(s) 54
Eco24I GRGCYC 2 cut(s) 313, 371
Eco32I GATATC 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 373
Eco72I CACGTG 1 cut(s) 519
EcoRV GATATC 1 cut(s) 42
EcoT38I GRGCYC 2 cut(s) 313, 371
EgeI GGCGCC 1 cut(s) 462
EheI GGCGCC 1 cut(s) 462
FaeI CATG 4 cut(s) 135, 210, 425, 647
FaiI YATR 8 cut(s) 133, 208, 269, 271, 299, 342, 423, 645
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FaqI GGGAC 1 cut(s) 419
FatI CATG 4 cut(s) 131, 206, 421, 643
FauI CCCGC 1 cut(s) 559
Fnu4HI GCNGC 2 cut(s) 123, 293
FokI GGATG 2 cut(s) 194, 248
FriOI GRGCYC 2 cut(s) 313, 371
Fsp4HI GCNGC 2 cut(s) 123, 293
FspBI CTAG 1 cut(s) 402
GlaI GCGC 1 cut(s) 462
GluI GCNGC 2 cut(s) 123, 293
GsaI CCCAGC 2 cut(s) 320, 362
GsuI CTGGAG 1 cut(s) 260
HaeII RGCGCY 1 cut(s) 464
HaeIII GGCC 2 cut(s) 54, 306
HapII CCGG 8 cut(s) 119, 144, 307, 335, 376, 391, 464, 542
HhaI GCGC 1 cut(s) 463
Hin1I GRCGYC 1 cut(s) 461
Hin1II CATG 4 cut(s) 135, 210, 425, 647
Hin6I GCGC 1 cut(s) 461
HinP1I GCGC 1 cut(s) 461
HinfI GANTC 2 cut(s) 418, 640
HpaII CCGG 8 cut(s) 119, 144, 307, 335, 376, 391, 464, 542
HphI GGTGA 5 cut(s) 91, 97, 224, 549, 581
Hpy166II GTNNAC 2 cut(s) 433, 493
Hpy188I TCNGA 1 cut(s) 477
Hpy188III TCNNGA 2 cut(s) 58, 233
Hpy8I GTNNAC 2 cut(s) 433, 493
Hpy99I CGWCG 2 cut(s) 152, 367
HpyAV CCTTC 1 cut(s) 182
HpyCH4III ACNGT 3 cut(s) 37, 410, 529
HpyCH4IV ACGT 3 cut(s) 435, 518, 584
HpyCH4V TGCA 1 cut(s) 267
HpyF3I CTNAG 3 cut(s) 288, 312, 383
HpySE526I ACGT 3 cut(s) 435, 518, 584
Hsp92I GRCGYC 1 cut(s) 461
Hsp92II CATG 4 cut(s) 135, 210, 425, 647
HspAI GCGC 1 cut(s) 461
KasI GGCGCC 1 cut(s) 460
KpnI GGTACC 1 cut(s) 382
Kzo9I GATC 2 cut(s) 30, 195
LmnI GCTCC 1 cut(s) 581
Lsp1109I GCAGC 1 cut(s) 109
LweI GCATC 1 cut(s) 226
MaeI CTAG 1 cut(s) 402
MaeII ACGT 3 cut(s) 435, 518, 584
MaeIII GTNAC 3 cut(s) 212, 386, 580
MalI GATC 2 cut(s) 32, 197
MboI GATC 2 cut(s) 30, 195
MboII GAAGA 2 cut(s) 57, 94
MhlI GDGCHC 3 cut(s) 313, 371, 578
MluCI AATT 2 cut(s) 241, 454
Mly113I GGCGCC 1 cut(s) 461
MlyI GAGTC 2 cut(s) 412, 649
MmeI TCCRAC 1 cut(s) 429
MnlI CCTC 8 cut(s) 65, 113, 151, 168, 240, 408, 471, 619
MspA1I CMGCKG 1 cut(s) 316
MspI CCGG 8 cut(s) 119, 144, 307, 335, 376, 391, 464, 542
MspR9I CCNGG 2 cut(s) 308, 335
NarI GGCGCC 1 cut(s) 461
NciI CCSGG 2 cut(s) 308, 335
NdeII GATC 2 cut(s) 30, 195
NlaIII CATG 4 cut(s) 135, 210, 425, 647
NlaIV GGNNCC 5 cut(s) 228, 326, 356, 380, 462
NmuCI GTSAC 1 cut(s) 212
PceI AGGCCT 1 cut(s) 54
PkrI GCNGC 2 cut(s) 124, 294
PleI GAGTC 2 cut(s) 412, 648
PluTI GGCGCC 1 cut(s) 464
PmaCI CACGTG 1 cut(s) 519
PmlI CACGTG 1 cut(s) 519
PpsI GAGTC 2 cut(s) 412, 648
Ppu21I YACGTR 2 cut(s) 519, 585
PspCI CACGTG 1 cut(s) 519
PspFI CCCAGC 2 cut(s) 316, 358
PspN4I GGNNCC 5 cut(s) 228, 326, 356, 380, 462
PspPI GGNCC 2 cut(s) 304, 373
PvuII CAGCTG 1 cut(s) 316
RsaI GTAC 4 cut(s) 167, 380, 412, 538
RsaNI GTAC 4 cut(s) 166, 379, 411, 537
Rsr2I CGGWCCG 1 cut(s) 373
RsrII CGGWCCG 1 cut(s) 373
SatI GCNGC 2 cut(s) 123, 293
Sau3AI GATC 2 cut(s) 30, 195
Sau96I GGNCC 2 cut(s) 304, 373
SchI GAGTC 2 cut(s) 412, 649
ScrFI CCNGG 2 cut(s) 308, 335
SduI GDGCHC 3 cut(s) 313, 371, 578
SfaNI GCATC 1 cut(s) 226
SfoI GGCGCC 1 cut(s) 462
SgrAI CRCCGGYG 1 cut(s) 541
SinI GGWCC 1 cut(s) 373
SmlI CTYRAG 2 cut(s) 48, 56
SmoI CTYRAG 2 cut(s) 48, 56
Sse9I AATT 2 cut(s) 241, 454
SseBI AGGCCT 1 cut(s) 54
SsiI CCGC 2 cut(s) 292, 566
SspDI GGCGCC 1 cut(s) 460
SspMI CTAG 1 cut(s) 402
StuI AGGCCT 1 cut(s) 54
StyD4I CCNGG 2 cut(s) 306, 333
TaaI ACNGT 3 cut(s) 37, 410, 529
TaiI ACGT 3 cut(s) 438, 521, 587
TaqI TCGA 1 cut(s) 506
TaqII GACCGA 1 cut(s) 361
TasI AATT 2 cut(s) 241, 454
TatI WGTACW 1 cut(s) 165
TauI GCSGC 1 cut(s) 295
TscAI CASTG 1 cut(s) 42
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 1 cut(s) 122
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 2 cut(s) 17, 201
TspGWI ACGGA 1 cut(s) 568
TspRI CASTG 1 cut(s) 42
VpaK11BI GGWCC 1 cut(s) 373
XapI RAATTY 1 cut(s) 454
XspI CTAG 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.