FvH4_5g01970

Ribosomal protein S1-like RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016325
Physical Location & Seq
Reverse (-)
1237913 .. 1239359
1447 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g01970.t1

Sequence Viewer

Length: 483 bp
ATGGCTCAAGCCCCTTCTGCTCCTCCAATGCCTCCAGCGATGGGTGGTACTTCTGATGATCATGGTTCTTTTCAGGGGGTACCTCATGCTGCTCCTGCAAAGCCTCAAAAGGATGCAGGTGTAACGAGAGTTTTGTCAACGAATACTGTGGGTTTAATCAAAGCATGGGAAGAAAGAGAGAAGGCTAAACTGGAAAACAAGGCAAATAAAAGGTTATCTAATGTTGGAACGTGGGAACGAAGCAAGCAAGCAGGTATTGAAGCGCAACAAAGGAAGTATGAGGAGAAACTAGAAAAGAAGAAGGCATTGTACTTTGAGAAGATGCAAAACAAAATAGCTGAAGTCCATAAGGAAGCAGAAGAGAAGAGGATGATGGTTCAAGCTGCAAAAAAGGAAGAATGCCAGAAGGTGGAGGAGATGGCTGAGAAATACCGTGCAACTGGGCATGCACCAAAGAATAAGATATCTTGTTTTCACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L21p S1

Protein Analysis

161

Amino Acids

17.93

Weight (kDa)

9.43

Isoelectric Point (pI)

51.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 52 - 152 5.6e-30 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01970
malus_domestica MD06G1078100.v1.1 MD14G1099100.v1.1
prunus_persica Prupe.5G095900_v2.0.a1 Prupe.5G095900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0198401
rosa_laevigata RLG00000003870
rosa_roxburghii Rroxscaffold_3G00257720
rosa_rugosa Rorug07G0047700 Rorug07G0047700
rosa_samantha Rh7AG171500 Rh7BG174300 Rh7CG180100 Rh7DG173400
rosa_wichuraiana Rw7G014970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 107
Acc36I ACCTGC 2 cut(s) 107, 242
Acc65I GGTACC 1 cut(s) 79
AccB1I GGYRCC 1 cut(s) 79
AccB7I CCANNNNNTGG 1 cut(s) 409
AcuI CTGAAG 1 cut(s) 360
AfaI GTAC 3 cut(s) 49, 81, 311
AfiI CCNNNNNNNGG 2 cut(s) 41, 409
AgsI TTSAA 2 cut(s) 260, 380
AluBI AGCT 2 cut(s) 338, 383
AluI AGCT 2 cut(s) 338, 383
ApeKI GCWGC 2 cut(s) 89, 383
Asp718I GGTACC 1 cut(s) 79
AspLEI GCGC 1 cut(s) 265
AsuHPI GGTGA 1 cut(s) 467
BanI GGYRCC 1 cut(s) 79
BarI GAAGNNNNNNTAC 2 cut(s) 293, 325
BbvI GCAGC 2 cut(s) 76, 370
BccI CCATC 3 cut(s) 34, 367, 412
BclI TGATCA 1 cut(s) 58
BfaI CTAG 1 cut(s) 290
BfuAI ACCTGC 2 cut(s) 107, 242
BisI GCNGC 2 cut(s) 90, 384
BlsI GCNGC 2 cut(s) 91, 385
BmiI GGNNCC 1 cut(s) 81
BmrI ACTGGG 1 cut(s) 450
BmsI GCATC 2 cut(s) 103, 312
BmuI ACTGGG 1 cut(s) 450
BpmI CTGGAG 1 cut(s) 18
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 409
Bse1I ACTGG 2 cut(s) 195, 445
BseGI GGATG 2 cut(s) 118, 375
BseLI CCNNNNNNNGG 2 cut(s) 41, 409
BseMII CTCAG 1 cut(s) 414
BseNI ACTGG 2 cut(s) 195, 445
BseRI GAGGAG 3 cut(s) 12, 296, 428
BseXI GCAGC 2 cut(s) 76, 370
BshNI GGYRCC 1 cut(s) 79
BslI CCNNNNNNNGG 2 cut(s) 41, 409
BsmI GAATGC 1 cut(s) 404
Bsp143I GATC 1 cut(s) 58
BspCNI CTCAG 1 cut(s) 415
BspLI GGNNCC 1 cut(s) 81
BspMI ACCTGC 2 cut(s) 107, 242
BspT107I GGYRCC 1 cut(s) 79
BsrI ACTGG 2 cut(s) 195, 445
BssMI GATC 1 cut(s) 58
Bst4CI ACNGT 2 cut(s) 148, 434
Bst6I CTCTTC 2 cut(s) 354, 359
BstC8I GCNNGC 3 cut(s) 245, 249, 447
BstDEI CTNAG 1 cut(s) 423
BstF5I GGATG 2 cut(s) 118, 375
BstHHI GCGC 1 cut(s) 265
BstKTI GATC 1 cut(s) 61
BstMBI GATC 1 cut(s) 58
BstMWI GCNNNNNNNGC 2 cut(s) 17, 95
BstNSI RCATGY 1 cut(s) 449
BstV1I GCAGC 2 cut(s) 76, 370
BtgZI GCGATG 1 cut(s) 53
BtsCI GGATG 2 cut(s) 118, 375
BveI ACCTGC 2 cut(s) 107, 242
Cac8I GCNNGC 3 cut(s) 245, 249, 447
CfoI GCGC 1 cut(s) 265
Csp6I GTAC 3 cut(s) 48, 80, 310
CviAII CATG 4 cut(s) 62, 86, 165, 446
CviJI RGCY 7 cut(s) 5, 11, 103, 185, 338, 383, 422
CviKI_1 RGCY 7 cut(s) 5, 11, 103, 185, 338, 383, 422
CviQI GTAC 3 cut(s) 48, 80, 310
DdeI CTNAG 1 cut(s) 423
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
Eam1104I CTCTTC 2 cut(s) 354, 359
EarI CTCTTC 2 cut(s) 354, 359
Eco32I GATATC 1 cut(s) 465
Eco57I CTGAAG 1 cut(s) 360
EcoRV GATATC 1 cut(s) 465
FaeI CATG 4 cut(s) 65, 89, 168, 449
FaiI YATR 6 cut(s) 63, 87, 166, 279, 348, 447
FatI CATG 4 cut(s) 61, 85, 164, 445
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 2 cut(s) 90, 384
FokI GGATG 2 cut(s) 125, 382
Fsp4HI GCNGC 2 cut(s) 90, 384
FspBI CTAG 1 cut(s) 290
GlaI GCGC 1 cut(s) 264
GluI GCNGC 2 cut(s) 90, 384
GsuI CTGGAG 1 cut(s) 18
HhaI GCGC 1 cut(s) 265
Hin1II CATG 4 cut(s) 65, 89, 168, 449
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HincII GTYRAC 1 cut(s) 138
HindII GTYRAC 1 cut(s) 138
HphI GGTGA 1 cut(s) 467
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 1 cut(s) 55
Hpy8I GTNNAC 1 cut(s) 138
HpyAV CCTTC 4 cut(s) 24, 175, 295, 400
HpyCH4III ACNGT 2 cut(s) 148, 434
HpyCH4IV ACGT 1 cut(s) 230
HpyCH4V TGCA 6 cut(s) 98, 116, 325, 386, 437, 449
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 95
HpyF3I CTNAG 1 cut(s) 423
HpySE526I ACGT 1 cut(s) 230
Hsp92II CATG 4 cut(s) 65, 89, 168, 449
HspAI GCGC 1 cut(s) 263
KpnI GGTACC 1 cut(s) 83
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 1 cut(s) 58
LmnI GCTCC 2 cut(s) 25, 97
LpnPI CCDG 8 cut(s) 48, 59, 102, 108, 176, 237, 416, 426
Lsp1109I GCAGC 2 cut(s) 76, 370
LweI GCATC 2 cut(s) 103, 312
MaeI CTAG 1 cut(s) 290
MaeII ACGT 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 121
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MboII GAAGA 6 cut(s) 182, 310, 331, 371, 376, 407
MmeI TCCRAC 1 cut(s) 205
MnlI CCTC 7 cut(s) 33, 42, 93, 114, 274, 360, 406
MseI TTAA 1 cut(s) 155
Mva1269I GAATGC 1 cut(s) 404
MwoI GCNNNNNNNGC 2 cut(s) 17, 95
NdeII GATC 1 cut(s) 58
NlaIII CATG 4 cut(s) 65, 89, 168, 449
NlaIV GGNNCC 1 cut(s) 81
NspI RCATGY 1 cut(s) 449
PaeI GCATGC 1 cut(s) 449
PaqCI CACCTGC 1 cut(s) 107
PctI GAATGC 1 cut(s) 404
PflMI CCANNNNNTGG 1 cut(s) 409
PkrI GCNGC 2 cut(s) 91, 385
PspN4I GGNNCC 1 cut(s) 81
RsaI GTAC 3 cut(s) 49, 81, 311
RsaNI GTAC 3 cut(s) 48, 80, 310
SaqAI TTAA 1 cut(s) 155
SatI GCNGC 2 cut(s) 90, 384
Sau3AI GATC 1 cut(s) 58
SetI ASST 8 cut(s) 85, 121, 215, 233, 256, 340, 385, 411
SfaNI GCATC 2 cut(s) 103, 312
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
SphI GCATGC 1 cut(s) 449
SspMI CTAG 1 cut(s) 290
TaaI ACNGT 2 cut(s) 148, 434
TaiI ACGT 1 cut(s) 233
TatI WGTACW 1 cut(s) 309
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TseI GCWGC 2 cut(s) 89, 383
Van91I CCANNNNNTGG 1 cut(s) 409
XceI RCATGY 1 cut(s) 449
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.