Rh7DG173400

Ribosomal protein S1-like RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0016325
Physical Location & Seq
Forward (+)
15810040 .. 15813211
3172 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG173400.1

Sequence Viewer

Length: 483 bp
ATGGCTCAAGCCCCTTCTGCTCCTCCATTAATGCCTCCAGCGATGGGCGGTTCCCATCATGGTTCTCATCATGGGGTACATCATGCTGCTCCTGCAAAGCCTCGAAAGGATGCAGGTGTAGCGAAAGCTTTGTCAACGAATAATGTGGGTTTAATCAAAGCATGGGAAGATAGCGAGAAGGCAAAAGTGGAAAACAAGGCAAATAAAAAGTTATCTAATGTTGGAACGTGGGAGCGCAGCAAGCAAGCATGTATTGAAGCGCAGCAAAGGAAGTATGAGGAGAAACTAGAAAAGAAGAAGGCATTGTACTTTGAGAAGATGCAAAACAAAATAGCTGAACTCCATAAGGAAGCAGAAGAGAAGAGGATGATGGTTGAAGTTGCAAAAAATGAAGAACGTCAAAAGGTAGAGGAGATGGCTGAGAAATACCGTGCAGCTGGGCATACACCAAAGAATAAGATGTTACCATGTTTTCATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L21p S1

Protein Analysis

160

Amino Acids

17.97

Weight (kDa)

9.5

Isoelectric Point (pI)

51.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 51 - 151 1e-28 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01970
malus_domestica MD06G1078100.v1.1 MD14G1099100.v1.1
prunus_persica Prupe.5G095900_v2.0.a1 Prupe.5G095900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0198401
rosa_laevigata RLG00000003870
rosa_roxburghii Rroxscaffold_3G00257720
rosa_rugosa Rorug07G0047700 Rorug07G0047700
rosa_samantha Rh7AG171500 Rh7BG174300 Rh7CG180100 Rh7DG173400
rosa_wichuraiana Rw7G014970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 104
Acc36I ACCTGC 1 cut(s) 104
AciI CCGC 1 cut(s) 48
AfaI GTAC 2 cut(s) 78, 308
AfiI CCNNNNNNNGG 1 cut(s) 44
AgsI TTSAA 2 cut(s) 257, 377
AluBI AGCT 3 cut(s) 128, 335, 437
AluI AGCT 3 cut(s) 128, 335, 437
ApeKI GCWGC 4 cut(s) 86, 237, 262, 434
ArsI GACNNNNNNTTYG 2 cut(s) 116, 148
AseI ATTAAT 1 cut(s) 29
AspLEI GCGC 2 cut(s) 237, 262
BarI GAAGNNNNNNTAC 2 cut(s) 290, 322
BbvI GCAGC 4 cut(s) 73, 249, 274, 446
BccI CCATC 4 cut(s) 37, 63, 364, 409
BfaI CTAG 1 cut(s) 287
BfuAI ACCTGC 1 cut(s) 104
BisI GCNGC 4 cut(s) 87, 238, 263, 435
BlsI GCNGC 4 cut(s) 88, 239, 264, 436
BmiI GGNNCC 1 cut(s) 52
BmsI GCATC 2 cut(s) 100, 309
BpmI CTGGAG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 44
BseGI GGATG 2 cut(s) 115, 372
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMII CTCAG 1 cut(s) 411
BseRI GAGGAG 3 cut(s) 12, 293, 425
BseXI GCAGC 4 cut(s) 73, 249, 274, 446
BseYI CCCAGC 1 cut(s) 437
BsgI GTGCAG 1 cut(s) 453
BslI CCNNNNNNNGG 1 cut(s) 44
BspACI CCGC 1 cut(s) 48
BspCNI CTCAG 1 cut(s) 412
BspLI GGNNCC 1 cut(s) 52
BspMI ACCTGC 1 cut(s) 104
Bst4CI ACNGT 1 cut(s) 431
Bst6I CTCTTC 2 cut(s) 351, 356
BstC8I GCNNGC 2 cut(s) 242, 246
BstDEI CTNAG 1 cut(s) 420
BstF5I GGATG 2 cut(s) 115, 372
BstHHI GCGC 2 cut(s) 237, 262
BstMWI GCNNNNNNNGC 4 cut(s) 17, 92, 119, 241
BstNSI RCATGY 1 cut(s) 252
BstV1I GCAGC 4 cut(s) 73, 249, 274, 446
BtgZI GCGATG 1 cut(s) 56
BtsCI GGATG 2 cut(s) 115, 372
BveI ACCTGC 1 cut(s) 104
Cac8I GCNNGC 2 cut(s) 242, 246
CfoI GCGC 2 cut(s) 237, 262
Csp6I GTAC 2 cut(s) 77, 307
CviAII CATG 6 cut(s) 59, 71, 83, 162, 249, 468
CviJI RGCY 7 cut(s) 5, 11, 100, 128, 335, 419, 437
CviKI_1 RGCY 7 cut(s) 5, 11, 100, 128, 335, 419, 437
CviQI GTAC 2 cut(s) 77, 307
DdeI CTNAG 1 cut(s) 420
Eam1104I CTCTTC 2 cut(s) 351, 356
EarI CTCTTC 2 cut(s) 351, 356
FaeI CATG 6 cut(s) 62, 74, 86, 165, 252, 471
FaiI YATR 9 cut(s) 60, 72, 84, 163, 250, 276, 345, 444, 469
FatI CATG 6 cut(s) 58, 70, 82, 161, 248, 467
Fnu4HI GCNGC 4 cut(s) 87, 238, 263, 435
FokI GGATG 2 cut(s) 122, 379
Fsp4HI GCNGC 4 cut(s) 87, 238, 263, 435
FspBI CTAG 1 cut(s) 287
GlaI GCGC 2 cut(s) 236, 261
GluI GCNGC 4 cut(s) 87, 238, 263, 435
GsaI CCCAGC 1 cut(s) 441
GsuI CTGGAG 1 cut(s) 21
HhaI GCGC 2 cut(s) 237, 262
Hin1II CATG 6 cut(s) 62, 74, 86, 165, 252, 471
Hin6I GCGC 2 cut(s) 235, 260
HinP1I GCGC 2 cut(s) 235, 260
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HindIII AAGCTT 1 cut(s) 126
Hpy166II GTNNAC 1 cut(s) 135
Hpy188III TCNNGA 1 cut(s) 480
Hpy8I GTNNAC 1 cut(s) 135
HpyAV CCTTC 3 cut(s) 24, 172, 292
HpyCH4III ACNGT 1 cut(s) 431
HpyCH4IV ACGT 2 cut(s) 227, 397
HpyCH4V TGCA 5 cut(s) 95, 113, 322, 383, 434
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 92, 119, 241
HpyF3I CTNAG 1 cut(s) 420
HpySE526I ACGT 2 cut(s) 227, 397
Hsp92II CATG 6 cut(s) 62, 74, 86, 165, 252, 471
HspAI GCGC 2 cut(s) 235, 260
LmnI GCTCC 3 cut(s) 25, 94, 232
LpnPI CCDG 4 cut(s) 51, 99, 105, 423
Lsp1109I GCAGC 4 cut(s) 73, 249, 274, 446
LweI GCATC 2 cut(s) 100, 309
MaeI CTAG 1 cut(s) 287
MaeII ACGT 2 cut(s) 227, 397
MaeIII GTNAC 1 cut(s) 462
MboII GAAGA 6 cut(s) 179, 307, 328, 368, 373, 404
MmeI TCCRAC 1 cut(s) 202
MnlI CCTC 6 cut(s) 33, 45, 111, 271, 357, 403
MseI TTAA 2 cut(s) 29, 152
MspA1I CMGCKG 1 cut(s) 437
MwoI GCNNNNNNNGC 4 cut(s) 17, 92, 119, 241
NlaIII CATG 6 cut(s) 62, 74, 86, 165, 252, 471
NlaIV GGNNCC 1 cut(s) 52
NspI RCATGY 1 cut(s) 252
PaqCI CACCTGC 1 cut(s) 104
PkrI GCNGC 4 cut(s) 88, 239, 264, 436
PshBI ATTAAT 1 cut(s) 29
PspFI CCCAGC 1 cut(s) 437
PspN4I GGNNCC 1 cut(s) 52
PvuII CAGCTG 1 cut(s) 437
RsaI GTAC 2 cut(s) 78, 308
RsaNI GTAC 2 cut(s) 77, 307
SaqAI TTAA 2 cut(s) 29, 152
SatI GCNGC 4 cut(s) 87, 238, 263, 435
SetI ASST 7 cut(s) 118, 130, 230, 337, 400, 408, 439
SfaNI GCATC 2 cut(s) 100, 309
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
SsiI CCGC 1 cut(s) 48
SspMI CTAG 1 cut(s) 287
TaaI ACNGT 1 cut(s) 431
TaiI ACGT 2 cut(s) 230, 400
TaqI TCGA 1 cut(s) 103
TatI WGTACW 1 cut(s) 306
Tru1I TTAA 2 cut(s) 29, 152
Tru9I TTAA 2 cut(s) 29, 152
TseI GCWGC 4 cut(s) 86, 237, 262, 434
TspDTI ATGAA 2 cut(s) 405, 464
VspI ATTAAT 1 cut(s) 29
XceI RCATGY 1 cut(s) 252
XspI CTAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.