Rh7CG180100

Ribosomal protein S1-like RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0016325
Physical Location & Seq
Reverse (-)
15517488 .. 15520123
2636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG180100.1

Sequence Viewer

Length: 504 bp
ATGGCTCAAGCCCCTTCTGCTCCTCCAATGCCTCCAGCGATGGGTGGTTCCCATCGTGGTTCTCATCACGGTTCCCATCATGGTTCTCATCATGGGGTACATCATGCTGCTCCTGCAAAGCCTCGAAAGGATGCAGGTGTAGCGAAAGCTTTGTCAACGAATAATGTGGGTTTAATCAAAGCATGGGAAGATAGCGAGAAGGCAAAAGTGGAAAACAAGGCAAATAAAAAGTTATCTAATGTTGGAACGTGGGAGCGCAGCAAGCAAGCATGTATTGAAGCGCAGCAAAGGAAGTATGAGGAGAAACTAGAAAAGAAGAAGGCATTGTACTTTGAGAAGATGCAAAACAAAATAGCTGAACTCCATAAGGAAGCAGAAGAGAAGAGGATGATGGTTGAAGTTGCAAAAAATGAAGAACGTCAAAAGGTAGAGGAGATGGCTGAGAAATACCGTGCAGCTGGGCATACACCAAAGAATAAGATGTTACCATGTTTTCATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L21p S1

Protein Analysis

167

Amino Acids

18.72

Weight (kDa)

9.58

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 58 - 158 1.2e-28 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01970
malus_domestica MD06G1078100.v1.1 MD14G1099100.v1.1
prunus_persica Prupe.5G095900_v2.0.a1 Prupe.5G095900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0198401
rosa_laevigata RLG00000003870
rosa_roxburghii Rroxscaffold_3G00257720
rosa_rugosa Rorug07G0047700 Rorug07G0047700
rosa_samantha Rh7AG171500 Rh7BG174300 Rh7CG180100 Rh7DG173400
rosa_wichuraiana Rw7G014970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 125
Acc36I ACCTGC 1 cut(s) 125
AfaI GTAC 2 cut(s) 99, 329
AfiI CCNNNNNNNGG 1 cut(s) 41
AgsI TTSAA 2 cut(s) 278, 398
AluBI AGCT 3 cut(s) 149, 356, 458
AluI AGCT 3 cut(s) 149, 356, 458
ApeKI GCWGC 4 cut(s) 107, 258, 283, 455
ArsI GACNNNNNNTTYG 2 cut(s) 137, 169
AspLEI GCGC 2 cut(s) 258, 283
BarI GAAGNNNNNNTAC 2 cut(s) 311, 343
BbvI GCAGC 4 cut(s) 94, 270, 295, 467
BccI CCATC 5 cut(s) 34, 60, 84, 385, 430
BfaI CTAG 1 cut(s) 308
BfuAI ACCTGC 1 cut(s) 125
BisI GCNGC 4 cut(s) 108, 259, 284, 456
BlsI GCNGC 4 cut(s) 109, 260, 285, 457
BmiI GGNNCC 2 cut(s) 49, 73
BmsI GCATC 2 cut(s) 121, 330
BpmI CTGGAG 1 cut(s) 18
Bsc4I CCNNNNNNNGG 1 cut(s) 41
BseGI GGATG 2 cut(s) 136, 393
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMII CTCAG 1 cut(s) 432
BseRI GAGGAG 3 cut(s) 12, 314, 446
BseXI GCAGC 4 cut(s) 94, 270, 295, 467
BseYI CCCAGC 1 cut(s) 458
BsgI GTGCAG 1 cut(s) 474
BslI CCNNNNNNNGG 1 cut(s) 41
BspCNI CTCAG 1 cut(s) 433
BspLI GGNNCC 2 cut(s) 49, 73
BspMI ACCTGC 1 cut(s) 125
Bst4CI ACNGT 2 cut(s) 71, 452
Bst6I CTCTTC 2 cut(s) 372, 377
BstC8I GCNNGC 2 cut(s) 263, 267
BstDEI CTNAG 1 cut(s) 441
BstF5I GGATG 2 cut(s) 136, 393
BstHHI GCGC 2 cut(s) 258, 283
BstMWI GCNNNNNNNGC 4 cut(s) 17, 113, 140, 262
BstNSI RCATGY 1 cut(s) 273
BstV1I GCAGC 4 cut(s) 94, 270, 295, 467
BtgZI GCGATG 1 cut(s) 53
BtsCI GGATG 2 cut(s) 136, 393
BveI ACCTGC 1 cut(s) 125
Cac8I GCNNGC 2 cut(s) 263, 267
CfoI GCGC 2 cut(s) 258, 283
Csp6I GTAC 2 cut(s) 98, 328
CviAII CATG 6 cut(s) 80, 92, 104, 183, 270, 489
CviJI RGCY 7 cut(s) 5, 11, 121, 149, 356, 440, 458
CviKI_1 RGCY 7 cut(s) 5, 11, 121, 149, 356, 440, 458
CviQI GTAC 2 cut(s) 98, 328
DdeI CTNAG 1 cut(s) 441
Eam1104I CTCTTC 2 cut(s) 372, 377
EarI CTCTTC 2 cut(s) 372, 377
FaeI CATG 6 cut(s) 83, 95, 107, 186, 273, 492
FaiI YATR 9 cut(s) 81, 93, 105, 184, 271, 297, 366, 465, 490
FatI CATG 6 cut(s) 79, 91, 103, 182, 269, 488
Fnu4HI GCNGC 4 cut(s) 108, 259, 284, 456
FokI GGATG 2 cut(s) 143, 400
Fsp4HI GCNGC 4 cut(s) 108, 259, 284, 456
FspBI CTAG 1 cut(s) 308
GlaI GCGC 2 cut(s) 257, 282
GluI GCNGC 4 cut(s) 108, 259, 284, 456
GsaI CCCAGC 1 cut(s) 462
GsuI CTGGAG 1 cut(s) 18
HhaI GCGC 2 cut(s) 258, 283
Hin1II CATG 6 cut(s) 83, 95, 107, 186, 273, 492
Hin6I GCGC 2 cut(s) 256, 281
HinP1I GCGC 2 cut(s) 256, 281
HincII GTYRAC 1 cut(s) 156
HindII GTYRAC 1 cut(s) 156
HindIII AAGCTT 1 cut(s) 147
Hpy166II GTNNAC 1 cut(s) 156
Hpy188III TCNNGA 1 cut(s) 501
Hpy8I GTNNAC 1 cut(s) 156
HpyAV CCTTC 3 cut(s) 24, 193, 313
HpyCH4III ACNGT 2 cut(s) 71, 452
HpyCH4IV ACGT 2 cut(s) 248, 418
HpyCH4V TGCA 5 cut(s) 116, 134, 343, 404, 455
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 113, 140, 262
HpyF3I CTNAG 1 cut(s) 441
HpySE526I ACGT 2 cut(s) 248, 418
Hsp92II CATG 6 cut(s) 83, 95, 107, 186, 273, 492
HspAI GCGC 2 cut(s) 256, 281
LmnI GCTCC 3 cut(s) 25, 115, 253
LpnPI CCDG 4 cut(s) 48, 120, 126, 444
Lsp1109I GCAGC 4 cut(s) 94, 270, 295, 467
LweI GCATC 2 cut(s) 121, 330
MaeI CTAG 1 cut(s) 308
MaeII ACGT 2 cut(s) 248, 418
MaeIII GTNAC 1 cut(s) 483
MboII GAAGA 6 cut(s) 200, 328, 349, 389, 394, 425
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 6 cut(s) 33, 42, 132, 292, 378, 424
MseI TTAA 1 cut(s) 173
MspA1I CMGCKG 1 cut(s) 458
MwoI GCNNNNNNNGC 4 cut(s) 17, 113, 140, 262
NlaIII CATG 6 cut(s) 83, 95, 107, 186, 273, 492
NlaIV GGNNCC 2 cut(s) 49, 73
NspI RCATGY 1 cut(s) 273
PaqCI CACCTGC 1 cut(s) 125
PkrI GCNGC 4 cut(s) 109, 260, 285, 457
PspFI CCCAGC 1 cut(s) 458
PspN4I GGNNCC 2 cut(s) 49, 73
PvuII CAGCTG 1 cut(s) 458
RsaI GTAC 2 cut(s) 99, 329
RsaNI GTAC 2 cut(s) 98, 328
SaqAI TTAA 1 cut(s) 173
SatI GCNGC 4 cut(s) 108, 259, 284, 456
SetI ASST 7 cut(s) 139, 151, 251, 358, 421, 429, 460
SfaNI GCATC 2 cut(s) 121, 330
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
SspMI CTAG 1 cut(s) 308
TaaI ACNGT 2 cut(s) 71, 452
TaiI ACGT 2 cut(s) 251, 421
TaqI TCGA 1 cut(s) 124
TatI WGTACW 1 cut(s) 327
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TseI GCWGC 4 cut(s) 107, 258, 283, 455
TspDTI ATGAA 2 cut(s) 426, 485
XceI RCATGY 1 cut(s) 273
XspI CTAG 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.