RchiOBHm_Chr7g0198401

Ribosomal protein S1-like RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0016325
Physical Location & Seq
Forward (+)
16256824 .. 16259451
2628 bp
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UTR
Exon/CDS
Intron
PRQ17751

Sequence Viewer

Length: 480 bp
ATGGCTCAAGCCCCTTCTGCTCCTCCAATGCCTCCAGCGATGGGCGGTTCCCATCATGGTTCTCATCATGGGGTGCATCATGCTGCTCCTGCAAAGCCTCGAAAGGATGCAGGTGTAGCGAAAGCTTTGTCAACGAATAATGTGGGTTTAATCAAAGCATGGGAAGATAGCGAGAAGGCAAAAGTGGAAAACAAGGCAAATAAAAAGTTATCTAATGTTGGAACGTGGGAGCGCAGCAAGCAAGCATGTATTGAAGCGCAGCAAAGGAAGTATGAGGAGAAACTAGAAAAGAAGAAGGCATTGTACTTTGAGAAGATGCAAAACAAAATAGCTGAACTCCATAAGGAAGCAGAAGAGAAGAGGATGATGGTTGAAGTTGCAAAAAATGAAGAACGTCAAAAGGTAGAGGAGATGGCTGAGAAATACCGTGCAGCTGGGCATACACCAAAGAATAAGATGTTACCATGTTTTCATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L21p S1

Protein Analysis

159

Amino Acids

17.86

Weight (kDa)

9.5

Isoelectric Point (pI)

51.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 50 - 150 1e-28 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01970
malus_domestica MD06G1078100.v1.1 MD14G1099100.v1.1
prunus_persica Prupe.5G095900_v2.0.a1 Prupe.5G095900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0198401
rosa_laevigata RLG00000003870
rosa_roxburghii Rroxscaffold_3G00257720
rosa_rugosa Rorug07G0047700 Rorug07G0047700
rosa_samantha Rh7AG171500 Rh7BG174300 Rh7CG180100 Rh7DG173400
rosa_wichuraiana Rw7G014970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 101
Acc36I ACCTGC 1 cut(s) 101
AciI CCGC 1 cut(s) 45
AfaI GTAC 1 cut(s) 305
AfiI CCNNNNNNNGG 1 cut(s) 41
AgsI TTSAA 2 cut(s) 254, 374
AluBI AGCT 3 cut(s) 125, 332, 434
AluI AGCT 3 cut(s) 125, 332, 434
ApeKI GCWGC 4 cut(s) 83, 234, 259, 431
ArsI GACNNNNNNTTYG 2 cut(s) 113, 145
AspLEI GCGC 2 cut(s) 234, 259
BarI GAAGNNNNNNTAC 2 cut(s) 287, 319
BbvI GCAGC 4 cut(s) 70, 246, 271, 443
BccI CCATC 4 cut(s) 34, 60, 361, 406
BfaI CTAG 1 cut(s) 284
BfuAI ACCTGC 1 cut(s) 101
BisI GCNGC 4 cut(s) 84, 235, 260, 432
BlsI GCNGC 4 cut(s) 85, 236, 261, 433
BmiI GGNNCC 1 cut(s) 49
BmsI GCATC 3 cut(s) 85, 97, 306
BpmI CTGGAG 1 cut(s) 18
Bsc4I CCNNNNNNNGG 1 cut(s) 41
BseGI GGATG 2 cut(s) 112, 369
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMII CTCAG 1 cut(s) 408
BseRI GAGGAG 3 cut(s) 12, 290, 422
BseXI GCAGC 4 cut(s) 70, 246, 271, 443
BseYI CCCAGC 1 cut(s) 434
BsgI GTGCAG 1 cut(s) 450
BslI CCNNNNNNNGG 1 cut(s) 41
BspACI CCGC 1 cut(s) 45
BspCNI CTCAG 1 cut(s) 409
BspLI GGNNCC 1 cut(s) 49
BspMI ACCTGC 1 cut(s) 101
Bst4CI ACNGT 1 cut(s) 428
Bst6I CTCTTC 2 cut(s) 348, 353
BstC8I GCNNGC 2 cut(s) 239, 243
BstDEI CTNAG 1 cut(s) 417
BstF5I GGATG 2 cut(s) 112, 369
BstHHI GCGC 2 cut(s) 234, 259
BstMWI GCNNNNNNNGC 4 cut(s) 17, 89, 116, 238
BstNSI RCATGY 1 cut(s) 249
BstV1I GCAGC 4 cut(s) 70, 246, 271, 443
BtgZI GCGATG 1 cut(s) 53
BtsCI GGATG 2 cut(s) 112, 369
BveI ACCTGC 1 cut(s) 101
Cac8I GCNNGC 2 cut(s) 239, 243
CfoI GCGC 2 cut(s) 234, 259
Csp6I GTAC 1 cut(s) 304
CviAII CATG 6 cut(s) 56, 68, 80, 159, 246, 465
CviJI RGCY 7 cut(s) 5, 11, 97, 125, 332, 416, 434
CviKI_1 RGCY 7 cut(s) 5, 11, 97, 125, 332, 416, 434
CviQI GTAC 1 cut(s) 304
DdeI CTNAG 1 cut(s) 417
Eam1104I CTCTTC 2 cut(s) 348, 353
EarI CTCTTC 2 cut(s) 348, 353
FaeI CATG 6 cut(s) 59, 71, 83, 162, 249, 468
FaiI YATR 9 cut(s) 57, 69, 81, 160, 247, 273, 342, 441, 466
FatI CATG 6 cut(s) 55, 67, 79, 158, 245, 464
Fnu4HI GCNGC 4 cut(s) 84, 235, 260, 432
FokI GGATG 2 cut(s) 119, 376
Fsp4HI GCNGC 4 cut(s) 84, 235, 260, 432
FspBI CTAG 1 cut(s) 284
GlaI GCGC 2 cut(s) 233, 258
GluI GCNGC 4 cut(s) 84, 235, 260, 432
GsaI CCCAGC 1 cut(s) 438
GsuI CTGGAG 1 cut(s) 18
HhaI GCGC 2 cut(s) 234, 259
Hin1II CATG 6 cut(s) 59, 71, 83, 162, 249, 468
Hin6I GCGC 2 cut(s) 232, 257
HinP1I GCGC 2 cut(s) 232, 257
HincII GTYRAC 1 cut(s) 132
HindII GTYRAC 1 cut(s) 132
HindIII AAGCTT 1 cut(s) 123
Hpy166II GTNNAC 1 cut(s) 132
Hpy188III TCNNGA 1 cut(s) 477
Hpy8I GTNNAC 1 cut(s) 132
HpyAV CCTTC 3 cut(s) 24, 169, 289
HpyCH4III ACNGT 1 cut(s) 428
HpyCH4IV ACGT 2 cut(s) 224, 394
HpyCH4V TGCA 6 cut(s) 76, 92, 110, 319, 380, 431
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 89, 116, 238
HpyF3I CTNAG 1 cut(s) 417
HpySE526I ACGT 2 cut(s) 224, 394
Hsp92II CATG 6 cut(s) 59, 71, 83, 162, 249, 468
HspAI GCGC 2 cut(s) 232, 257
LmnI GCTCC 3 cut(s) 25, 91, 229
LpnPI CCDG 4 cut(s) 48, 96, 102, 420
Lsp1109I GCAGC 4 cut(s) 70, 246, 271, 443
LweI GCATC 3 cut(s) 85, 97, 306
MaeI CTAG 1 cut(s) 284
MaeII ACGT 2 cut(s) 224, 394
MaeIII GTNAC 1 cut(s) 459
MboII GAAGA 6 cut(s) 176, 304, 325, 365, 370, 401
MmeI TCCRAC 1 cut(s) 199
MnlI CCTC 6 cut(s) 33, 42, 108, 268, 354, 400
MseI TTAA 1 cut(s) 149
MspA1I CMGCKG 1 cut(s) 434
MwoI GCNNNNNNNGC 4 cut(s) 17, 89, 116, 238
NlaIII CATG 6 cut(s) 59, 71, 83, 162, 249, 468
NlaIV GGNNCC 1 cut(s) 49
NspI RCATGY 1 cut(s) 249
PaqCI CACCTGC 1 cut(s) 101
PkrI GCNGC 4 cut(s) 85, 236, 261, 433
PspFI CCCAGC 1 cut(s) 434
PspN4I GGNNCC 1 cut(s) 49
PvuII CAGCTG 1 cut(s) 434
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
SaqAI TTAA 1 cut(s) 149
SatI GCNGC 4 cut(s) 84, 235, 260, 432
SetI ASST 7 cut(s) 115, 127, 227, 334, 397, 405, 436
SfaNI GCATC 3 cut(s) 85, 97, 306
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
SsiI CCGC 1 cut(s) 45
SspMI CTAG 1 cut(s) 284
TaaI ACNGT 1 cut(s) 428
TaiI ACGT 2 cut(s) 227, 397
TaqI TCGA 1 cut(s) 100
TatI WGTACW 1 cut(s) 303
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TseI GCWGC 4 cut(s) 83, 234, 259, 431
TspDTI ATGAA 2 cut(s) 402, 461
XceI RCATGY 1 cut(s) 249
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.