RLG00000003870

Ribosomal protein S1-like RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0016325
Physical Location & Seq
Reverse (-)
53775572 .. 53779321
3750 bp
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UTR
Exon/CDS
Intron
RLM00000003870

Sequence Viewer

Length: 492 bp
ATGGCTCAAGCCCCTTCTGCTCCTCCGATGCCTCCAGCGATGGATGGTTCCCATCGTGGTTCTCATCATGGTTCCCATCATGGGGTACATCATGCTGCTCCTGCAAAGCCTCGAAAGGATGCAGGTATAGCGAAAGCTTTGTCAACGAATAATGTGGGTTTAATCAAAGCATGGGAAGATAGCGAGAAGGCAAAAGTGGAAAACAAGGCAAATAAAAAGTTATCTAATGTTGGAACGTGGGAGCGCAGCAAGCAAGCATGTATTGAAGCGCAGCAAAGGAAGTATGAGGAGAAACTAGAAAAGAAGAAGGCATTGTACTTTGAGAAGATGCAAAACAAAATAGCTGAACTCCATAAGGAAGCAGAAGAGAAGAGGATGATGGTTGAAGTTGCAAAAAATGAAGAACGTCAAAAGGTAGAGGAGATGGCTGAGAAATACCGTGCAGCTGGGCATACACCAAAGAATAAGATGTTACCATGTTTTCATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L21p S1

Protein Analysis

164

Amino Acids

18.37

Weight (kDa)

9.5

Isoelectric Point (pI)

48.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 54 - 154 1.1e-28 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01970
malus_domestica MD06G1078100.v1.1 MD14G1099100.v1.1
prunus_persica Prupe.5G095900_v2.0.a1 Prupe.5G095900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0198401
rosa_laevigata RLG00000003870
rosa_roxburghii Rroxscaffold_3G00257720
rosa_rugosa Rorug07G0047700 Rorug07G0047700
rosa_samantha Rh7AG171500 Rh7BG174300 Rh7CG180100 Rh7DG173400
rosa_wichuraiana Rw7G014970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 113
AfaI GTAC 2 cut(s) 87, 317
AfiI CCNNNNNNNGG 2 cut(s) 81, 82
AgsI TTSAA 2 cut(s) 266, 386
AluBI AGCT 3 cut(s) 137, 344, 446
AluI AGCT 3 cut(s) 137, 344, 446
ApeKI GCWGC 4 cut(s) 95, 246, 271, 443
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
AspLEI GCGC 2 cut(s) 246, 271
BarI GAAGNNNNNNTAC 2 cut(s) 299, 331
BbvI GCAGC 4 cut(s) 82, 258, 283, 455
BccI CCATC 6 cut(s) 34, 38, 60, 84, 373, 418
BfaI CTAG 1 cut(s) 296
BfuAI ACCTGC 1 cut(s) 113
BisI GCNGC 4 cut(s) 96, 247, 272, 444
BlsI GCNGC 4 cut(s) 97, 248, 273, 445
BmiI GGNNCC 2 cut(s) 49, 73
BmsI GCATC 3 cut(s) 18, 109, 318
BpmI CTGGAG 1 cut(s) 18
Bsc4I CCNNNNNNNGG 2 cut(s) 81, 82
BseGI GGATG 3 cut(s) 49, 124, 381
BseLI CCNNNNNNNGG 2 cut(s) 81, 82
BseMII CTCAG 1 cut(s) 420
BseRI GAGGAG 3 cut(s) 12, 302, 434
BseXI GCAGC 4 cut(s) 82, 258, 283, 455
BseYI CCCAGC 1 cut(s) 446
BsgI GTGCAG 1 cut(s) 462
BslI CCNNNNNNNGG 2 cut(s) 81, 82
BspCNI CTCAG 1 cut(s) 421
BspLI GGNNCC 2 cut(s) 49, 73
BspMI ACCTGC 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 440
Bst6I CTCTTC 2 cut(s) 360, 365
BstC8I GCNNGC 2 cut(s) 251, 255
BstDEI CTNAG 1 cut(s) 429
BstF5I GGATG 3 cut(s) 49, 124, 381
BstHHI GCGC 2 cut(s) 246, 271
BstMWI GCNNNNNNNGC 4 cut(s) 17, 101, 128, 250
BstNSI RCATGY 1 cut(s) 261
BstV1I GCAGC 4 cut(s) 82, 258, 283, 455
BtgZI GCGATG 1 cut(s) 53
BtsCI GGATG 3 cut(s) 49, 124, 381
BveI ACCTGC 1 cut(s) 113
Cac8I GCNNGC 2 cut(s) 251, 255
CfoI GCGC 2 cut(s) 246, 271
Csp6I GTAC 2 cut(s) 86, 316
CviAII CATG 6 cut(s) 68, 80, 92, 171, 258, 477
CviJI RGCY 7 cut(s) 5, 11, 109, 137, 344, 428, 446
CviKI_1 RGCY 7 cut(s) 5, 11, 109, 137, 344, 428, 446
CviQI GTAC 2 cut(s) 86, 316
DdeI CTNAG 1 cut(s) 429
Eam1104I CTCTTC 2 cut(s) 360, 365
EarI CTCTTC 2 cut(s) 360, 365
FaeI CATG 6 cut(s) 71, 83, 95, 174, 261, 480
FatI CATG 6 cut(s) 67, 79, 91, 170, 257, 476
Fnu4HI GCNGC 4 cut(s) 96, 247, 272, 444
FokI GGATG 3 cut(s) 56, 131, 388
Fsp4HI GCNGC 4 cut(s) 96, 247, 272, 444
FspBI CTAG 1 cut(s) 296
GlaI GCGC 2 cut(s) 245, 270
GluI GCNGC 4 cut(s) 96, 247, 272, 444
GsaI CCCAGC 1 cut(s) 450
GsuI CTGGAG 1 cut(s) 18
HhaI GCGC 2 cut(s) 246, 271
Hin1II CATG 6 cut(s) 71, 83, 95, 174, 261, 480
Hin6I GCGC 2 cut(s) 244, 269
HinP1I GCGC 2 cut(s) 244, 269
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HindIII AAGCTT 1 cut(s) 135
Hpy166II GTNNAC 1 cut(s) 144
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 1 cut(s) 489
Hpy8I GTNNAC 1 cut(s) 144
HpyAV CCTTC 3 cut(s) 24, 181, 301
HpyCH4III ACNGT 1 cut(s) 440
HpyCH4IV ACGT 2 cut(s) 236, 406
HpyCH4V TGCA 5 cut(s) 104, 122, 331, 392, 443
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 101, 128, 250
HpyF3I CTNAG 1 cut(s) 429
HpySE526I ACGT 2 cut(s) 236, 406
Hsp92II CATG 6 cut(s) 71, 83, 95, 174, 261, 480
HspAI GCGC 2 cut(s) 244, 269
LmnI GCTCC 3 cut(s) 25, 103, 241
LpnPI CCDG 4 cut(s) 48, 108, 114, 432
Lsp1109I GCAGC 4 cut(s) 82, 258, 283, 455
LweI GCATC 3 cut(s) 18, 109, 318
MaeI CTAG 1 cut(s) 296
MaeII ACGT 2 cut(s) 236, 406
MaeIII GTNAC 1 cut(s) 471
MboII GAAGA 6 cut(s) 188, 316, 337, 377, 382, 413
MmeI TCCRAC 1 cut(s) 211
MnlI CCTC 6 cut(s) 33, 42, 120, 280, 366, 412
MseI TTAA 1 cut(s) 161
MspA1I CMGCKG 1 cut(s) 446
MwoI GCNNNNNNNGC 4 cut(s) 17, 101, 128, 250
NlaIII CATG 6 cut(s) 71, 83, 95, 174, 261, 480
NlaIV GGNNCC 2 cut(s) 49, 73
NspI RCATGY 1 cut(s) 261
PkrI GCNGC 4 cut(s) 97, 248, 273, 445
PspFI CCCAGC 1 cut(s) 446
PspN4I GGNNCC 2 cut(s) 49, 73
PvuII CAGCTG 1 cut(s) 446
RsaI GTAC 2 cut(s) 87, 317
RsaNI GTAC 2 cut(s) 86, 316
SaqAI TTAA 1 cut(s) 161
SatI GCNGC 4 cut(s) 96, 247, 272, 444
SetI ASST 7 cut(s) 127, 139, 239, 346, 409, 417, 448
SfaNI GCATC 3 cut(s) 18, 109, 318
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
SspMI CTAG 1 cut(s) 296
TaaI ACNGT 1 cut(s) 440
TaiI ACGT 2 cut(s) 239, 409
TaqI TCGA 1 cut(s) 112
TatI WGTACW 1 cut(s) 315
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TseI GCWGC 4 cut(s) 95, 246, 271, 443
TspDTI ATGAA 2 cut(s) 414, 473
XceI RCATGY 1 cut(s) 261
XspI CTAG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.