MD06G1078100.v1.1

Remorin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0016325
Physical Location & Seq
Reverse (-)
19302542 .. 19310274
7733 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1078100.v1.1.491

Sequence Viewer

Length: 438 bp
ATGGCGAGCCCAGTGCCAACACCACCTGAAAAAGAAAAGGCTACTCCTGCAATAGTTGAAAAGGATGCAGGTGCAATTAGAAAAGTTTTGTCAACCAAGTCATTGGGTTTAATCAAAGCATGGGAAGAACGCGAGAAAACAAAAGTAGACAACAAAGCAAATAAAAAGTTATCTAATGTTGTGGCATGGGAGCTAAGCAAACAAGCGGCTATTGATGCGCGTCAAAAGAAGTATGAGCAAAAACTAGAAAAGAAGAAGGCTTTGTACGTTGAAAAGATGCAAAACAAAATAGCTGGAATCCATAAGACAGCAGAAGAGAAGAAGGCAATGGTTGAAGAGGCGAAAAGGATAGAACGTAATAAGGTGGGCGAGAAGGCTGACGATTTCCGTGAAATAGGGCATGTACCAAAGAAAATCCTATCATGTTTTAACTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C Remorin_N

Protein Analysis

146

Amino Acids

16.4

Weight (kDa)

9.66

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 37 - 138 2.5e-27 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01970
malus_domestica MD06G1078100.v1.1 MD14G1099100.v1.1
prunus_persica Prupe.5G095900_v2.0.a1 Prupe.5G095900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0198401
rosa_laevigata RLG00000003870
rosa_roxburghii Rroxscaffold_3G00257720
rosa_rugosa Rorug07G0047700 Rorug07G0047700
rosa_samantha Rh7AG171500 Rh7BG174300 Rh7CG180100 Rh7DG173400
rosa_wichuraiana Rw7G014970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 59
Acc36I ACCTGC 1 cut(s) 59
AccI GTMKAC 1 cut(s) 147
AccII CGCG 2 cut(s) 132, 220
AciI CCGC 1 cut(s) 206
AfaI GTAC 2 cut(s) 266, 405
AgsI TTSAA 3 cut(s) 59, 272, 335
AluBI AGCT 2 cut(s) 193, 293
AluI AGCT 2 cut(s) 193, 293
AspLEI GCGC 1 cut(s) 220
BanII GRGCYC 1 cut(s) 11
BarI GAAGNNNNNNTAC 2 cut(s) 248, 280
BcgI CGANNNNNNTGC 1 cut(s) 29
BfaI CTAG 1 cut(s) 245
BfuAI ACCTGC 1 cut(s) 59
BisI GCNGC 1 cut(s) 207
BlpI GCTNAGC 1 cut(s) 194
BlsI GCNGC 1 cut(s) 208
BmrI ACTGGG 1 cut(s) 5
BmsI GCATC 3 cut(s) 55, 205, 267
BmuI ACTGGG 1 cut(s) 5
Bpu1102I GCTNAGC 1 cut(s) 194
Bse1I ACTGG 1 cut(s) 11
Bse3DI GCAATG 1 cut(s) 333
BseGI GGATG 1 cut(s) 70
BseMI GCAATG 1 cut(s) 333
BseNI ACTGG 1 cut(s) 11
Bsh1236I CGCG 2 cut(s) 132, 220
Bsp1286I GDGCHC 1 cut(s) 11
Bsp1720I GCTNAGC 1 cut(s) 194
BspACI CCGC 1 cut(s) 206
BspFNI CGCG 2 cut(s) 132, 220
BspMI ACCTGC 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 333
BsrI ACTGG 1 cut(s) 11
Bst4CI ACNGT 1 cut(s) 434
Bst6I CTCTTC 2 cut(s) 309, 330
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 194
BstF5I GGATG 1 cut(s) 70
BstFNI CGCG 2 cut(s) 132, 220
BstHHI GCGC 1 cut(s) 220
BstMWI GCNNNNNNNGC 2 cut(s) 47, 215
BstNSI RCATGY 1 cut(s) 404
BstUI CGCG 2 cut(s) 132, 220
BstXI CCANNNNNNTGG 1 cut(s) 103
BtsCI GGATG 1 cut(s) 70
BtsIMutI CAGTG 1 cut(s) 18
BveI ACCTGC 1 cut(s) 59
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 220
CseI GACGC 1 cut(s) 209
Csp6I GTAC 2 cut(s) 265, 404
CviAII CATG 4 cut(s) 120, 186, 401, 423
CviJI RGCY 7 cut(s) 9, 41, 193, 209, 260, 293, 377
CviKI_1 RGCY 7 cut(s) 9, 41, 193, 209, 260, 293, 377
CviQI GTAC 2 cut(s) 265, 404
DdeI CTNAG 1 cut(s) 194
Eam1104I CTCTTC 2 cut(s) 309, 330
EarI CTCTTC 2 cut(s) 309, 330
Eco24I GRGCYC 1 cut(s) 11
EcoT38I GRGCYC 1 cut(s) 11
FaeI CATG 4 cut(s) 123, 189, 404, 426
FaiI YATR 6 cut(s) 121, 187, 234, 303, 402, 424
FatI CATG 4 cut(s) 119, 185, 400, 422
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 1 cut(s) 77
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 1 cut(s) 245
GlaI GCGC 1 cut(s) 219
GluI GCNGC 1 cut(s) 207
HgaI GACGC 1 cut(s) 209
HhaI GCGC 1 cut(s) 220
Hin1II CATG 4 cut(s) 123, 189, 404, 426
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HincII GTYRAC 1 cut(s) 93
HindII GTYRAC 1 cut(s) 93
HinfI GANTC 1 cut(s) 297
Hpy166II GTNNAC 2 cut(s) 93, 148
Hpy8I GTNNAC 2 cut(s) 93, 148
HpyAV CCTTC 3 cut(s) 250, 316, 367
HpyCH4III ACNGT 1 cut(s) 434
HpyCH4IV ACGT 2 cut(s) 267, 355
HpyCH4V TGCA 4 cut(s) 50, 68, 74, 280
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 215
HpyF3I CTNAG 1 cut(s) 194
HpySE526I ACGT 2 cut(s) 267, 355
Hsp92II CATG 4 cut(s) 123, 189, 404, 426
HspAI GCGC 1 cut(s) 218
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 5 cut(s) 24, 39, 54, 60, 279
LweI GCATC 3 cut(s) 55, 205, 267
MaeI CTAG 1 cut(s) 245
MaeII ACGT 2 cut(s) 267, 355
MboII GAAGA 5 cut(s) 137, 265, 326, 331, 347
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 1 cut(s) 75
MnlI CCTC 1 cut(s) 331
MseI TTAA 2 cut(s) 110, 429
MvnI CGCG 2 cut(s) 132, 220
MwoI GCNNNNNNNGC 2 cut(s) 47, 215
NlaIII CATG 4 cut(s) 123, 189, 404, 426
NspI RCATGY 1 cut(s) 404
PaqCI CACCTGC 1 cut(s) 59
PfeI GAWTC 1 cut(s) 297
PkrI GCNGC 1 cut(s) 208
RsaI GTAC 2 cut(s) 266, 405
RsaNI GTAC 2 cut(s) 265, 404
SaqAI TTAA 2 cut(s) 110, 429
SatI GCNGC 1 cut(s) 207
SduI GDGCHC 1 cut(s) 11
SetI ASST 7 cut(s) 28, 73, 195, 270, 295, 358, 366
SfaNI GCATC 3 cut(s) 55, 205, 267
Sse9I AATT 1 cut(s) 75
SsiI CCGC 1 cut(s) 206
SspMI CTAG 1 cut(s) 245
TaaI ACNGT 1 cut(s) 434
TaiI ACGT 2 cut(s) 270, 358
TasI AATT 1 cut(s) 75
TauI GCSGC 1 cut(s) 209
TfiI GAWTC 1 cut(s) 297
Tru1I TTAA 2 cut(s) 110, 429
Tru9I TTAA 2 cut(s) 110, 429
TscAI CASTG 1 cut(s) 18
TspGWI ACGGA 1 cut(s) 377
TspRI CASTG 1 cut(s) 18
XceI RCATGY 1 cut(s) 404
XmiI GTMKAC 1 cut(s) 147
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.