Rroxscaffold_3G00257720

Ribosomal protein S1-like RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0016325
Physical Location & Seq
Reverse (-)
52037851 .. 52040091
2241 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00257720.1

Sequence Viewer

Length: 465 bp
ATGCCTCCGGCGATGGGTGGTTCCCATCGTGGTTCCCATCATGGTTCTCATCAGGGGGCACATCATGCTGCTCCTGCAAAACCTCGAAAGGATGCAGGTGTAGCGAAAGCTTTGTCAACGAATAATGTGGGTTTAATCAAAGCATGGGAAGATAGCGAGAAGGCAAAAGTGGAAAACAAGGCAAATAAAAAGTTATCTAATGTTGGAACGTGGGAGCGCAGCAAGCAAGCATGTATTGAAGCGCAGCAAAGGAAGTATGAGGAGAAACTAGAAAAGAAGAAGGCATTGTACTTTGAGAAGATGCAAAACAAAATAGCTGAACTCCATAAGGAAGCAGAAGAGAAGAGGATGATGGTTGAAGTTGCAAAAAATGAAGAACGTCAAAAGGTAGAGGAGTTGGCTGAGAAATACCGTGCAGCTGGGCATACACCAAAGAATAAGATGTTACCATGTTTTCATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L21p S1

Protein Analysis

154

Amino Acids

17.39

Weight (kDa)

9.58

Isoelectric Point (pI)

45.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 45 - 145 1.8e-28 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01970
malus_domestica MD06G1078100.v1.1 MD14G1099100.v1.1
prunus_persica Prupe.5G095900_v2.0.a1 Prupe.5G095900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0198401
rosa_laevigata RLG00000003870
rosa_roxburghii Rroxscaffold_3G00257720
rosa_rugosa Rorug07G0047700 Rorug07G0047700
rosa_samantha Rh7AG171500 Rh7BG174300 Rh7CG180100 Rh7DG173400
rosa_wichuraiana Rw7G014970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 86
Acc36I ACCTGC 1 cut(s) 86
AfaI GTAC 1 cut(s) 290
AfiI CCNNNNNNNGG 1 cut(s) 14
AgsI TTSAA 2 cut(s) 239, 359
AluBI AGCT 3 cut(s) 110, 317, 419
AluI AGCT 3 cut(s) 110, 317, 419
ApeKI GCWGC 4 cut(s) 68, 219, 244, 416
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
AspLEI GCGC 2 cut(s) 219, 244
BaeGI GKGCMC 1 cut(s) 61
BarI GAAGNNNNNNTAC 2 cut(s) 272, 304
BbvI GCAGC 4 cut(s) 55, 231, 256, 428
BccI CCATC 4 cut(s) 7, 33, 45, 346
BfaI CTAG 1 cut(s) 269
BfuAI ACCTGC 1 cut(s) 86
BisI GCNGC 4 cut(s) 69, 220, 245, 417
BlsI GCNGC 4 cut(s) 70, 221, 246, 418
BmiI GGNNCC 2 cut(s) 22, 34
BmsI GCATC 2 cut(s) 82, 291
Bsc4I CCNNNNNNNGG 1 cut(s) 14
BseGI GGATG 2 cut(s) 97, 354
BseLI CCNNNNNNNGG 1 cut(s) 14
BseMII CTCAG 1 cut(s) 393
BseRI GAGGAG 2 cut(s) 275, 407
BseSI GKGCMC 1 cut(s) 61
BseXI GCAGC 4 cut(s) 55, 231, 256, 428
BseYI CCCAGC 1 cut(s) 419
BsgI GTGCAG 1 cut(s) 435
BsiSI CCGG 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 61
BspCNI CTCAG 1 cut(s) 394
BspLI GGNNCC 2 cut(s) 22, 34
BspMI ACCTGC 1 cut(s) 86
Bst4CI ACNGT 1 cut(s) 413
Bst6I CTCTTC 2 cut(s) 333, 338
BstAPI GCANNNNNTGC 1 cut(s) 65
BstC8I GCNNGC 2 cut(s) 224, 228
BstDEI CTNAG 1 cut(s) 402
BstF5I GGATG 2 cut(s) 97, 354
BstHHI GCGC 2 cut(s) 219, 244
BstMWI GCNNNNNNNGC 4 cut(s) 65, 74, 101, 223
BstNSI RCATGY 1 cut(s) 234
BstSLI GKGCMC 1 cut(s) 61
BstV1I GCAGC 4 cut(s) 55, 231, 256, 428
BtgZI GCGATG 1 cut(s) 26
BtsCI GGATG 2 cut(s) 97, 354
BveI ACCTGC 1 cut(s) 86
Cac8I GCNNGC 2 cut(s) 224, 228
CfoI GCGC 2 cut(s) 219, 244
Csp6I GTAC 1 cut(s) 289
CviAII CATG 5 cut(s) 41, 65, 144, 231, 450
CviJI RGCY 4 cut(s) 110, 317, 401, 419
CviKI_1 RGCY 4 cut(s) 110, 317, 401, 419
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 1 cut(s) 402
Eam1104I CTCTTC 2 cut(s) 333, 338
EarI CTCTTC 2 cut(s) 333, 338
FaeI CATG 5 cut(s) 44, 68, 147, 234, 453
FaiI YATR 8 cut(s) 42, 66, 145, 232, 258, 327, 426, 451
FatI CATG 5 cut(s) 40, 64, 143, 230, 449
Fnu4HI GCNGC 4 cut(s) 69, 220, 245, 417
FokI GGATG 2 cut(s) 104, 361
Fsp4HI GCNGC 4 cut(s) 69, 220, 245, 417
FspBI CTAG 1 cut(s) 269
GlaI GCGC 2 cut(s) 218, 243
GluI GCNGC 4 cut(s) 69, 220, 245, 417
GsaI CCCAGC 1 cut(s) 423
HapII CCGG 1 cut(s) 8
HhaI GCGC 2 cut(s) 219, 244
Hin1II CATG 5 cut(s) 44, 68, 147, 234, 453
Hin6I GCGC 2 cut(s) 217, 242
HinP1I GCGC 2 cut(s) 217, 242
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HindIII AAGCTT 1 cut(s) 108
HpaII CCGG 1 cut(s) 8
Hpy166II GTNNAC 1 cut(s) 117
Hpy188III TCNNGA 1 cut(s) 462
Hpy8I GTNNAC 1 cut(s) 117
HpyAV CCTTC 2 cut(s) 154, 274
HpyCH4III ACNGT 1 cut(s) 413
HpyCH4IV ACGT 2 cut(s) 209, 379
HpyCH4V TGCA 5 cut(s) 77, 95, 304, 365, 416
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 74, 101, 223
HpyF3I CTNAG 1 cut(s) 402
HpySE526I ACGT 2 cut(s) 209, 379
Hsp92II CATG 5 cut(s) 44, 68, 147, 234, 453
HspAI GCGC 2 cut(s) 217, 242
LmnI GCTCC 2 cut(s) 76, 214
LpnPI CCDG 5 cut(s) 21, 38, 81, 87, 405
Lsp1109I GCAGC 4 cut(s) 55, 231, 256, 428
LweI GCATC 2 cut(s) 82, 291
MaeI CTAG 1 cut(s) 269
MaeII ACGT 2 cut(s) 209, 379
MaeIII GTNAC 1 cut(s) 444
MboII GAAGA 6 cut(s) 161, 289, 310, 350, 355, 386
MhlI GDGCHC 1 cut(s) 61
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 5 cut(s) 15, 93, 253, 339, 385
MseI TTAA 1 cut(s) 134
MspA1I CMGCKG 1 cut(s) 419
MspI CCGG 1 cut(s) 8
MwoI GCNNNNNNNGC 4 cut(s) 65, 74, 101, 223
NlaIII CATG 5 cut(s) 44, 68, 147, 234, 453
NlaIV GGNNCC 2 cut(s) 22, 34
NspI RCATGY 1 cut(s) 234
PaqCI CACCTGC 1 cut(s) 86
PkrI GCNGC 4 cut(s) 70, 221, 246, 418
PspFI CCCAGC 1 cut(s) 419
PspN4I GGNNCC 2 cut(s) 22, 34
PvuII CAGCTG 1 cut(s) 419
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
SaqAI TTAA 1 cut(s) 134
SatI GCNGC 4 cut(s) 69, 220, 245, 417
SduI GDGCHC 1 cut(s) 61
SetI ASST 8 cut(s) 85, 100, 112, 212, 319, 382, 390, 421
SfaNI GCATC 2 cut(s) 82, 291
SspMI CTAG 1 cut(s) 269
TaaI ACNGT 1 cut(s) 413
TaiI ACGT 2 cut(s) 212, 382
TaqI TCGA 1 cut(s) 85
TatI WGTACW 1 cut(s) 288
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TseI GCWGC 4 cut(s) 68, 219, 244, 416
TspDTI ATGAA 2 cut(s) 387, 446
XceI RCATGY 1 cut(s) 234
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.