MD14G1099100.v1.1

Pollen-specific protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0016325
Physical Location & Seq
Reverse (-)
15143964 .. 15148095
4132 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1099100.v1.1.491

Sequence Viewer

Length: 366 bp
ATGGCGAGCCCAGCGCCAACAACACCAGAAAAAGAAAAGGCTGTTCCTGCAAAAGTTGAAAAGGATGCAGGTTTGATTAGAAAAGCAAAGAAAAAGTTTTCTAATGTTGTGGCTTGGGAGCTAAGCAAGCAAGCAACCATTGATGCACGTCAAAAGAAATATGAGCAAAAACTAGAAAAGAAGAAGGCTTTGTACGTTGAAAAGATGCAAAACAAACTAGCTGAAATCCATAAGGCAGCAGAAGAGAAGAGGGCGATGGTTGTAGAGGGGAAAAGGATAGAACATAATAAGGTGGGCAAGAAGGCTGACGATTTCCGTGAAGTAGGGCTTGTACCAAAGAAAATCCTACCATGTTTTAACTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LIM

Protein Analysis

122

Amino Acids

13.79

Weight (kDa)

9.82

Isoelectric Point (pI)

47.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 23 - 114 6e-20 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01970
malus_domestica MD06G1078100.v1.1 MD14G1099100.v1.1
prunus_persica Prupe.5G095900_v2.0.a1 Prupe.5G095900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0198401
rosa_laevigata RLG00000003870
rosa_roxburghii Rroxscaffold_3G00257720
rosa_rugosa Rorug07G0047700 Rorug07G0047700
rosa_samantha Rh7AG171500 Rh7BG174300 Rh7CG180100 Rh7DG173400
rosa_wichuraiana Rw7G014970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 59
AfaI GTAC 2 cut(s) 194, 333
AgsI TTSAA 2 cut(s) 59, 200
AjiI CACGTC 1 cut(s) 149
AluBI AGCT 2 cut(s) 121, 221
AluI AGCT 2 cut(s) 121, 221
ApeKI GCWGC 1 cut(s) 236
AspLEI GCGC 1 cut(s) 16
BanII GRGCYC 1 cut(s) 11
BarI GAAGNNNNNNTAC 2 cut(s) 176, 208
BbvI GCAGC 1 cut(s) 248
BccI CCATC 1 cut(s) 250
BfaI CTAG 2 cut(s) 173, 218
BfoI RGCGCY 1 cut(s) 17
BfuAI ACCTGC 1 cut(s) 59
BisI GCNGC 1 cut(s) 237
BlpI GCTNAGC 1 cut(s) 122
BlsI GCNGC 1 cut(s) 238
BmgBI CACGTC 1 cut(s) 149
BmsI GCATC 3 cut(s) 55, 133, 195
Bpu1102I GCTNAGC 1 cut(s) 122
BseGI GGATG 1 cut(s) 70
BseXI GCAGC 1 cut(s) 248
BseYI CCCAGC 1 cut(s) 10
Bsp1286I GDGCHC 1 cut(s) 11
Bsp1720I GCTNAGC 1 cut(s) 122
BspMI ACCTGC 1 cut(s) 59
Bst6I CTCTTC 2 cut(s) 237, 242
BstC8I GCNNGC 3 cut(s) 7, 128, 132
BstDEI CTNAG 1 cut(s) 122
BstF5I GGATG 1 cut(s) 70
BstH2I RGCGCY 1 cut(s) 17
BstHHI GCGC 1 cut(s) 16
BstMWI GCNNNNNNNGC 3 cut(s) 11, 47, 127
BstV1I GCAGC 1 cut(s) 248
BtgZI GCGATG 1 cut(s) 269
BtrI CACGTC 1 cut(s) 149
BtsCI GGATG 1 cut(s) 70
BveI ACCTGC 1 cut(s) 59
Cac8I GCNNGC 3 cut(s) 7, 128, 132
CfoI GCGC 1 cut(s) 16
Csp6I GTAC 2 cut(s) 193, 332
CviAII CATG 1 cut(s) 351
CviJI RGCY 8 cut(s) 9, 41, 113, 121, 188, 221, 305, 328
CviKI_1 RGCY 8 cut(s) 9, 41, 113, 121, 188, 221, 305, 328
CviQI GTAC 2 cut(s) 193, 332
DdeI CTNAG 1 cut(s) 122
Eam1104I CTCTTC 2 cut(s) 237, 242
EarI CTCTTC 2 cut(s) 237, 242
Eco24I GRGCYC 1 cut(s) 11
EcoT38I GRGCYC 1 cut(s) 11
FaeI CATG 1 cut(s) 354
FaiI YATR 4 cut(s) 162, 231, 285, 352
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FatI CATG 1 cut(s) 350
Fnu4HI GCNGC 1 cut(s) 237
FokI GGATG 1 cut(s) 77
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 1 cut(s) 237
FspBI CTAG 2 cut(s) 173, 218
GlaI GCGC 1 cut(s) 15
GluI GCNGC 1 cut(s) 237
GsaI CCCAGC 1 cut(s) 14
HaeII RGCGCY 1 cut(s) 17
HhaI GCGC 1 cut(s) 16
Hin1II CATG 1 cut(s) 354
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HpyAV CCTTC 2 cut(s) 178, 295
HpyCH4IV ACGT 2 cut(s) 148, 195
HpyCH4V TGCA 4 cut(s) 50, 68, 146, 208
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 47, 127
HpyF3I CTNAG 1 cut(s) 122
HpySE526I ACGT 2 cut(s) 148, 195
Hsp92II CATG 1 cut(s) 354
HspAI GCGC 1 cut(s) 14
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 4 cut(s) 24, 39, 54, 60
Lsp1109I GCAGC 1 cut(s) 248
LweI GCATC 3 cut(s) 55, 133, 195
MaeI CTAG 2 cut(s) 173, 218
MaeII ACGT 2 cut(s) 148, 195
MboII GAAGA 3 cut(s) 193, 254, 259
MhlI GDGCHC 1 cut(s) 11
MnlI CCTC 2 cut(s) 243, 259
MseI TTAA 1 cut(s) 357
MwoI GCNNNNNNNGC 3 cut(s) 11, 47, 127
NlaIII CATG 1 cut(s) 354
PkrI GCNGC 1 cut(s) 238
PspFI CCCAGC 1 cut(s) 10
RsaI GTAC 2 cut(s) 194, 333
RsaNI GTAC 2 cut(s) 193, 332
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 1 cut(s) 237
SduI GDGCHC 1 cut(s) 11
SetI ASST 6 cut(s) 73, 123, 151, 198, 223, 294
SfaNI GCATC 3 cut(s) 55, 133, 195
SspMI CTAG 2 cut(s) 173, 218
TaiI ACGT 2 cut(s) 151, 198
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TseI GCWGC 1 cut(s) 236
TspGWI ACGGA 1 cut(s) 305
XspI CTAG 2 cut(s) 173, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.