FvH4_5g03460

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016328
Physical Location & Seq
Forward (+)
2059392 .. 2060482
1091 bp
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UTR
Exon/CDS
Intron
FvH4_5g03460.t1

Sequence Viewer

Length: 669 bp
ATGGCTACTAGTCCCTTTAGCCCGACCGAGCAAGTAAAGCCCTTAGCCCCATCATCAAGGTACAGCGTTCGCAGCCATGACTTGGAAGAAGACGTCGTCGCTTCCGTCCACCTAAAGCTCACCCAAAGAAAATACGTCCACTGCTGCGGCCTCGCCTCCGCCATGTTCTTGATCCTCGCCGTCATCGCCATCGTCCTCGGCTTCACCGTCTTCCACGTCAAGGGCCCCAAGATCACCATGAACGGTGTCACGATCACTAACGGAAGTTTAACGAACGGTTCCAACATCACTATCATGGTAGATGTGTCGATCAAAAACCCTAACGTCGCGTCGTTTAGGTATGAAAACACGTCCACTTTGGTTTACTTCAACGGGACGGAGGTCGGCGAGGGGAGGAGCCCAGCAGGGGTGGCGAAGGCGAGGAGGACGATGAGGATGAACGTGACGGTGGATATTGTTCCGGCGAAGATCTTGGCCGTGCCGGAGTTTAATAAAGAGTCTAAGGCGGGGGCGTTGACTTTTACTAGCTTTACGAGCGCTCATGGGAAGGTGAAAGTTGCTATGGTGAAGAAGAATGTTGTGGTTGAGCTGAATTGTACCATGGTGTACAATTTAGCGAGCGGAGGGATTCAGGCCGGAGATAAGTGCAGACGGCGAGTTAGACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

223

Amino Acids

23.99

Weight (kDa)

9.86

Isoelectric Point (pI)

32.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 102 - 200 1.5e-09 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03460
malus_domestica MD06G1094700.v1.1 MD14G1114900.v1.1
prunus_persica Prupe.5G109900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0196201
rosa_laevigata RLG00000004052
rosa_multiflora Rmu_sc0007292.1_g000014
rosa_roxburghii Rroxscaffold_1G00000810 Rroxscaffold_3G00259650 Rroxscaffold_3G00259660
rosa_rugosa Rorug07G0032000
rosa_samantha Rh7BG159200 Rh7CG163200 Rh7DG158500
rosa_wichuraiana Rw7G013480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 96
AccB7I CCANNNNNTGG 1 cut(s) 82
AccBSI CCGCTC 1 cut(s) 621
AccII CGCG 1 cut(s) 329
AciI CCGC 4 cut(s) 147, 159, 506, 621
AclWI GGATC 1 cut(s) 166
AcoI YGGCCR 1 cut(s) 474
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 3 cut(s) 62, 598, 608
AfeI AGCGCT 1 cut(s) 538
AfiI CCNNNNNNNGG 3 cut(s) 82, 220, 406
AflIII ACRYGT 1 cut(s) 348
AgsI TTSAA 1 cut(s) 370
AhlI ACTAGT 1 cut(s) 8
AjiI CACGTC 2 cut(s) 217, 351
AluBI AGCT 3 cut(s) 118, 528, 589
AluI AGCT 3 cut(s) 118, 528, 589
AlwI GGATC 1 cut(s) 166
Aor51HI AGCGCT 1 cut(s) 538
AoxI GGCC 4 cut(s) 148, 223, 474, 633
ApaI GGGCCC 1 cut(s) 227
ApeKI GCWGC 2 cut(s) 72, 144
AspLEI GCGC 1 cut(s) 539
AspS9I GGNCC 2 cut(s) 223, 224
AsuHPI GGTGA 5 cut(s) 112, 196, 226, 562, 577
BaeGI GKGCMC 1 cut(s) 227
BanII GRGCYC 2 cut(s) 227, 401
BbsI GAAGAC 2 cut(s) 96, 202
BbvI GCAGC 2 cut(s) 84, 131
BccI CCATC 2 cut(s) 58, 197
BceAI ACGGC 2 cut(s) 164, 461
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 2 cut(s) 9, 525
BfoI RGCGCY 1 cut(s) 540
BglII AGATCT 1 cut(s) 468
BisI GCNGC 3 cut(s) 73, 145, 148
BlsI GCNGC 3 cut(s) 74, 146, 149
BmgBI CACGTC 2 cut(s) 217, 351
BmgT120I GGNCC 2 cut(s) 223, 224
BmiI GGNNCC 4 cut(s) 225, 226, 280, 398
BoxI GACNNNNGTC 1 cut(s) 380
BpiI GAAGAC 2 cut(s) 96, 202
Bpu10I CCTNAGC 1 cut(s) 43
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 196, 600
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 220, 406
BseDI CCNNGG 2 cut(s) 196, 600
BseGI GGATG 1 cut(s) 441
BseLI CCNNNNNNNGG 3 cut(s) 82, 220, 406
BseRI GAGGAG 2 cut(s) 409, 436
BseSI GKGCMC 1 cut(s) 227
BseXI GCAGC 2 cut(s) 84, 131
BseYI CCCAGC 1 cut(s) 400
BsgI GTGCAG 1 cut(s) 667
Bsh1236I CGCG 1 cut(s) 329
Bsh1285I CGRYCG 1 cut(s) 27
BshFI GGCC 4 cut(s) 150, 225, 476, 635
BsiEI CGRYCG 1 cut(s) 27
BsiSI CCGG 3 cut(s) 461, 482, 636
BslFI GGGAC 1 cut(s) 388
BslI CCNNNNNNNGG 3 cut(s) 82, 220, 406
BsmFI GGGAC 1 cut(s) 388
BsnI GGCC 4 cut(s) 150, 225, 476, 635
Bsp120I GGGCCC 1 cut(s) 223
Bsp1286I GDGCHC 2 cut(s) 227, 401
Bsp1407I TGTACA 1 cut(s) 606
Bsp143I GATC 5 cut(s) 171, 231, 252, 309, 468
Bsp19I CCATGG 1 cut(s) 600
BspACI CCGC 4 cut(s) 147, 159, 506, 621
BspANI GGCC 4 cut(s) 150, 225, 476, 635
BspFNI CGCG 1 cut(s) 329
BspLI GGNNCC 4 cut(s) 225, 226, 280, 398
BspPI GGATC 1 cut(s) 166
BsrBI CCGCTC 1 cut(s) 621
BsrGI TGTACA 1 cut(s) 606
BssECI CCNNGG 2 cut(s) 196, 600
BssMI GATC 5 cut(s) 171, 231, 252, 309, 468
BssNI GRCGYC 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 600
Bst4CI ACNGT 4 cut(s) 208, 245, 278, 448
BstACI GRCGYC 1 cut(s) 93
BstAUI TGTACA 1 cut(s) 606
BstC8I GCNNGC 1 cut(s) 619
BstDEI CTNAG 2 cut(s) 43, 501
BstDSI CCRYGG 1 cut(s) 600
BstF5I GGATG 1 cut(s) 441
BstFNI CGCG 1 cut(s) 329
BstH2I RGCGCY 1 cut(s) 540
BstHHI GCGC 1 cut(s) 539
BstKTI GATC 5 cut(s) 174, 234, 255, 312, 471
BstMBI GATC 5 cut(s) 171, 231, 252, 309, 468
BstMCI CGRYCG 1 cut(s) 27
BstMWI GCNNNNNNNGC 5 cut(s) 37, 72, 185, 410, 534
BstPAI GACNNNNGTC 1 cut(s) 380
BstSLI GKGCMC 1 cut(s) 227
BstUI CGCG 1 cut(s) 329
BstV1I GCAGC 2 cut(s) 84, 131
BstV2I GAAGAC 2 cut(s) 96, 202
BstX2I RGATCY 1 cut(s) 468
BstYI RGATCY 1 cut(s) 468
BsuRI GGCC 4 cut(s) 150, 225, 476, 635
BtgI CCRYGG 1 cut(s) 600
BtgZI GCGATG 1 cut(s) 169
BtrI CACGTC 2 cut(s) 217, 351
BtsCI GGATG 1 cut(s) 441
BtsI GCAGTG 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 619
CfoI GCGC 1 cut(s) 539
Cfr13I GGNCC 2 cut(s) 223, 224
CseI GACGC 1 cut(s) 318
Csp6I GTAC 3 cut(s) 61, 597, 607
CviAII CATG 6 cut(s) 77, 163, 238, 295, 542, 601
CviQI GTAC 3 cut(s) 61, 597, 607
DdeI CTNAG 2 cut(s) 43, 501
DpnI GATC 5 cut(s) 173, 233, 254, 311, 470
DpnII GATC 5 cut(s) 171, 231, 252, 309, 468
EaeI YGGCCR 1 cut(s) 474
EciI GGCGGA 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 600
Eco24I GRGCYC 2 cut(s) 227, 401
Eco47III AGCGCT 1 cut(s) 538
EcoO109I RGGNCCY 2 cut(s) 223, 224
EcoT14I CCWWGG 1 cut(s) 600
EcoT38I GRGCYC 2 cut(s) 227, 401
ErhI CCWWGG 1 cut(s) 600
FaeI CATG 6 cut(s) 80, 166, 241, 298, 545, 604
FaiI YATR 8 cut(s) 78, 164, 239, 296, 342, 543, 563, 602
FaqI GGGAC 1 cut(s) 388
FatI CATG 6 cut(s) 76, 162, 237, 294, 541, 600
FauI CCCGC 1 cut(s) 499
Fnu4HI GCNGC 3 cut(s) 73, 145, 148
FokI GGATG 1 cut(s) 448
FriOI GRGCYC 2 cut(s) 227, 401
Fsp4HI GCNGC 3 cut(s) 73, 145, 148
FspBI CTAG 2 cut(s) 9, 525
GlaI GCGC 1 cut(s) 538
GluI GCNGC 3 cut(s) 73, 145, 148
GsaI CCCAGC 1 cut(s) 404
HaeII RGCGCY 1 cut(s) 540
HaeIII GGCC 4 cut(s) 150, 225, 476, 635
HapII CCGG 3 cut(s) 461, 482, 636
HgaI GACGC 1 cut(s) 318
HhaI GCGC 1 cut(s) 539
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 6 cut(s) 80, 166, 241, 298, 545, 604
Hin6I GCGC 1 cut(s) 537
HinP1I GCGC 1 cut(s) 537
HincII GTYRAC 1 cut(s) 516
HindII GTYRAC 1 cut(s) 516
HinfI GANTC 2 cut(s) 497, 628
HpaII CCGG 3 cut(s) 461, 482, 636
HphI GGTGA 5 cut(s) 112, 196, 226, 562, 577
Hpy166II GTNNAC 6 cut(s) 109, 139, 354, 364, 516, 607
Hpy188III TCNNGA 2 cut(s) 169, 250
Hpy8I GTNNAC 6 cut(s) 109, 139, 354, 364, 516, 607
Hpy99I CGWCG 4 cut(s) 98, 101, 329, 334
HpyAV CCTTC 2 cut(s) 409, 541
HpyCH4III ACNGT 4 cut(s) 208, 245, 278, 448
HpyCH4IV ACGT 6 cut(s) 93, 135, 216, 324, 350, 441
HpyCH4V TGCA 1 cut(s) 648
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 72, 185, 410, 534
HpyF3I CTNAG 2 cut(s) 43, 501
HpySE526I ACGT 6 cut(s) 93, 135, 216, 324, 350, 441
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 6 cut(s) 80, 166, 241, 298, 545, 604
HspAI GCGC 1 cut(s) 537
Kzo9I GATC 5 cut(s) 171, 231, 252, 309, 468
LmnI GCTCC 1 cut(s) 396
LpnPI CCDG 6 cut(s) 390, 414, 474, 495, 617, 649
Lsp1109I GCAGC 2 cut(s) 84, 131
MaeI CTAG 2 cut(s) 9, 525
MaeII ACGT 6 cut(s) 93, 135, 216, 324, 350, 441
MaeIII GTNAC 2 cut(s) 247, 442
MalI GATC 5 cut(s) 173, 233, 254, 311, 470
MbiI CCGCTC 1 cut(s) 621
MboI GATC 5 cut(s) 171, 231, 252, 309, 468
MboII GAAGA 6 cut(s) 98, 101, 202, 478, 580, 583
MflI RGATCY 1 cut(s) 468
MhlI GDGCHC 2 cut(s) 227, 401
MluCI AATT 2 cut(s) 592, 610
MlyI GAGTC 1 cut(s) 506
MmeI TCCRAC 1 cut(s) 306
MseI TTAA 2 cut(s) 269, 489
MslI CAYNNNNRTG 1 cut(s) 293
MspI CCGG 3 cut(s) 461, 482, 636
MvnI CGCG 1 cut(s) 329
MwoI GCNNNNNNNGC 5 cut(s) 37, 72, 185, 410, 534
NcoI CCATGG 1 cut(s) 600
NdeII GATC 5 cut(s) 171, 231, 252, 309, 468
NlaIII CATG 6 cut(s) 80, 166, 241, 298, 545, 604
NlaIV GGNNCC 4 cut(s) 225, 226, 280, 398
NmeAIII GCCGAG 1 cut(s) 177
NmuCI GTSAC 2 cut(s) 247, 442
PcsI WCGNNNNNNNCGW 2 cut(s) 102, 204
PfeI GAWTC 1 cut(s) 628
PflFI GACNNNGTC 1 cut(s) 95
PflMI CCANNNNNTGG 1 cut(s) 82
PkrI GCNGC 3 cut(s) 74, 146, 149
PleI GAGTC 1 cut(s) 505
PpsI GAGTC 1 cut(s) 505
PshAI GACNNNNGTC 1 cut(s) 380
PspFI CCCAGC 1 cut(s) 400
PspN4I GGNNCC 4 cut(s) 225, 226, 280, 398
PspOMI GGGCCC 1 cut(s) 223
PspPI GGNCC 2 cut(s) 223, 224
PsuI RGATCY 1 cut(s) 468
PsyI GACNNNGTC 1 cut(s) 95
RsaI GTAC 3 cut(s) 62, 598, 608
RsaNI GTAC 3 cut(s) 61, 597, 607
RseI CAYNNNNRTG 1 cut(s) 293
SaqAI TTAA 2 cut(s) 269, 489
SatI GCNGC 3 cut(s) 73, 145, 148
Sau3AI GATC 5 cut(s) 171, 231, 252, 309, 468
Sau96I GGNCC 2 cut(s) 223, 224
SchI GAGTC 1 cut(s) 506
SduI GDGCHC 2 cut(s) 227, 401
SmiMI CAYNNNNRTG 1 cut(s) 293
SpeI ACTAGT 1 cut(s) 8
Sse9I AATT 2 cut(s) 592, 610
SsiI CCGC 4 cut(s) 147, 159, 506, 621
SspMI CTAG 2 cut(s) 9, 525
StyI CCWWGG 1 cut(s) 600
TaaI ACNGT 4 cut(s) 208, 245, 278, 448
TaiI ACGT 6 cut(s) 96, 138, 219, 327, 353, 444
TaqI TCGA 1 cut(s) 308
TaqII GACCGA 1 cut(s) 41
TasI AATT 2 cut(s) 592, 610
TatI WGTACW 1 cut(s) 606
TauI GCSGC 1 cut(s) 150
TfiI GAWTC 1 cut(s) 628
Tru1I TTAA 2 cut(s) 269, 489
Tru9I TTAA 2 cut(s) 269, 489
TscAI CASTG 1 cut(s) 146
TseFI GTSAC 2 cut(s) 247, 442
TseI GCWGC 2 cut(s) 72, 144
Tsp45I GTSAC 2 cut(s) 247, 442
TspDTI ATGAA 3 cut(s) 254, 357, 452
TspGWI ACGGA 3 cut(s) 94, 276, 392
TspRI CASTG 1 cut(s) 146
Tth111I GACNNNGTC 1 cut(s) 95
Van91I CCANNNNNTGG 1 cut(s) 82
XspI CTAG 2 cut(s) 9, 525
ZraI GACGTC 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.