Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0016328

Physical Location & Seq

Genomic Coordinates Forward (+)

54078249 .. 54080044

Gene Structure 1796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00259660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGCCTAAGTTCAAGTATGAGAAACTAGACGCGTGGGTTTACTACCACAGGAAGAAGGTCGGGGAGGGGAAGAGTCCTAGGGGTGTGGCCATGGGGAGAAGGACACCGAGAATGAATGTGACAATGGAGCTTGTTCCGGCAATTATCATTGGCGTGCTGGAGTTTGGTGACGAATTCAAGGAAGGGGCGTTGACTATGACTAGCTTCACAAGACGAAGAGTGCATCATTGGCTACTCTATACGCTTTACAAAGGTGGTGACATAGCGGAAAGATTTTGCTCACGCGGAGCAAAATTTACTATTACTATCAGCTTTCCCACTATGTTGCCACCGAAAAACAACTTTGGTGACACTAAGTTTCATCATGCCACCGGGAAGCTGCGACCATTTGACAAAGCAAGGAACTCGCCGCCTAAGCGAGCAAACAAGGTACACAAGGTGTGCAGTCCGGACAGAGCCTCGTCGCCCTACCCAAAAGTGGTAGGGACTTATTACCGGCATATAGCCACGTCGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

172

Amino Acids

19.76

Weight (kDa)

10.2

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016328)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03460
malus_domestica	MD06G1094700.v1.1 MD14G1114900.v1.1
prunus_persica	Prupe.5G109900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0196201
rosa_laevigata	RLG00000004052
rosa_multiflora	Rmu_sc0007292.1_g000014
rosa_roxburghii	Rroxscaffold_1G00000810 Rroxscaffold_3G00259650 Rroxscaffold_3G00259660
rosa_rugosa	Rorug07G0032000
rosa_samantha	Rh7BG159200 Rh7CG163200 Rh7DG158500
rosa_wichuraiana	Rw7G013480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	32, 285
AccIII	TCCGGA	1 cut(s)	448
AciI	CCGC	3 cut(s)	266, 285, 410
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	2 cut(s)	173, 293
AdeI	CACNNNGTG	1 cut(s)	439
AfaI	GTAC	2 cut(s)	432, 515
AfiI	CCNNNNNNNGG	1 cut(s)	478
AflIII	ACRYGT	1 cut(s)	30
AgsI	TTSAA	2 cut(s)	13, 178
AjiI	CACGTC	1 cut(s)	510
AluBI	AGCT	4 cut(s)	130, 204, 312, 379
AluI	AGCT	4 cut(s)	130, 204, 312, 379
Aor13HI	TCCGGA	1 cut(s)	448
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	1 cut(s)	379
ApoI	RAATTY	2 cut(s)	173, 293
AspA2I	CCTAGG	1 cut(s)	77
AsuC2I	CCSGG	1 cut(s)	373
AsuHPI	GGTGA	3 cut(s)	179, 269, 359
AvrII	CCTAGG	1 cut(s)	77
BalI	TGGCCA	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	366
BcgI	CGANNNNNNTGC	2 cut(s)	387, 421
BcnI	CCSGG	1 cut(s)	373
BfaI	CTAG	3 cut(s)	26, 78, 201
BisI	GCNGC	2 cut(s)	380, 410
BlnI	CCTAGG	1 cut(s)	77
BlsI	GCNGC	2 cut(s)	381, 411
Bme1390I	CCNGG	1 cut(s)	373
BmgBI	CACGTC	1 cut(s)	510
BmrFI	CCNGG	1 cut(s)	373
BmsI	GCATC	1 cut(s)	232
BpmI	CTGGAG	1 cut(s)	179
Bpu10I	CCTNAGC	1 cut(s)	414
BpuMI	CCSGG	1 cut(s)	373
BsaJI	CCNNGG	2 cut(s)	77, 90
BsaWI	WCCGGW	1 cut(s)	448
Bsc4I	CCNNNNNNNGG	1 cut(s)	478
Bse118I	RCCGGY	1 cut(s)	495
BseAI	TCCGGA	1 cut(s)	448
BseDI	CCNNGG	2 cut(s)	77, 90
BseLI	CCNNNNNNNGG	1 cut(s)	478
BseXI	GCAGC	1 cut(s)	366
BsgI	GTGCAG	1 cut(s)	463
Bsh1236I	CGCG	2 cut(s)	32, 285
BshFI	GGCC	1 cut(s)	89
BsiSI	CCGG	4 cut(s)	137, 372, 449, 496
BslFI	GGGAC	1 cut(s)	499
BslI	CCNNNNNNNGG	1 cut(s)	478
BsmFI	GGGAC	1 cut(s)	499
BsnI	GGCC	1 cut(s)	89
Bsp13I	TCCGGA	1 cut(s)	448
Bsp19I	CCATGG	1 cut(s)	90
BspACI	CCGC	3 cut(s)	266, 285, 410
BspANI	GGCC	1 cut(s)	89
BspEI	TCCGGA	1 cut(s)	448
BspFNI	CGCG	2 cut(s)	32, 285
BsrFI	RCCGGY	1 cut(s)	495
BssAI	RCCGGY	1 cut(s)	495
BssECI	CCNNGG	2 cut(s)	77, 90
BssT1I	CCWWGG	2 cut(s)	77, 90
Bst6I	CTCTTC	2 cut(s)	65, 211
BstC8I	GCNNGC	2 cut(s)	155, 420
BstDEI	CTNAG	3 cut(s)	6, 354, 414
BstDSI	CCRYGG	1 cut(s)	90
BstFNI	CGCG	2 cut(s)	32, 285
BstMWI	GCNNNNNNNGC	2 cut(s)	229, 415
BstSCI	CCNGG	1 cut(s)	371
BstUI	CGCG	2 cut(s)	32, 285
BstV1I	GCAGC	1 cut(s)	366
BsuRI	GGCC	1 cut(s)	89
BtgI	CCRYGG	1 cut(s)	90
BtrI	CACGTC	1 cut(s)	510
Cac8I	GCNNGC	2 cut(s)	155, 420
Cfr10I	RCCGGY	1 cut(s)	495
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	2 cut(s)	431, 514
CviAII	CATG	2 cut(s)	91, 365
CviJI	RGCY	8 cut(s)	89, 130, 204, 232, 312, 379, 458, 506
CviKI_1	RGCY	8 cut(s)	89, 130, 204, 232, 312, 379, 458, 506
CviQI	GTAC	2 cut(s)	431, 514
DdeI	CTNAG	3 cut(s)	6, 354, 414
DraIII	CACNNNGTG	1 cut(s)	439
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	2 cut(s)	65, 211
EarI	CTCTTC	2 cut(s)	65, 211
Eco130I	CCWWGG	2 cut(s)	77, 90
EcoRI	GAATTC	1 cut(s)	173
EcoT14I	CCWWGG	2 cut(s)	77, 90
ErhI	CCWWGG	2 cut(s)	77, 90
FaeI	CATG	2 cut(s)	94, 368
FaiI	YATR	9 cut(s)	18, 92, 197, 240, 263, 323, 366, 501, 503
FaqI	GGGAC	1 cut(s)	499
FatI	CATG	2 cut(s)	90, 364
Fnu4HI	GCNGC	2 cut(s)	380, 410
Fsp4HI	GCNGC	2 cut(s)	380, 410
FspBI	CTAG	3 cut(s)	26, 78, 201
GluI	GCNGC	2 cut(s)	380, 410
GsuI	CTGGAG	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	4 cut(s)	137, 372, 449, 496
HgaI	GACGC	1 cut(s)	38
Hin1II	CATG	2 cut(s)	94, 368
HincII	GTYRAC	1 cut(s)	192
HindII	GTYRAC	1 cut(s)	192
HinfI	GANTC	1 cut(s)	73
HpaII	CCGG	4 cut(s)	137, 372, 449, 496
HphI	GGTGA	3 cut(s)	179, 269, 359
Hpy166II	GTNNAC	3 cut(s)	40, 192, 433
Hpy188III	TCNNGA	1 cut(s)	449
Hpy8I	GTNNAC	3 cut(s)	40, 192, 433
Hpy99I	CGWCG	2 cut(s)	466, 514
HpyAV	CCTTC	3 cut(s)	49, 93, 176
HpyCH4IV	ACGT	1 cut(s)	509
HpyCH4V	TGCA	2 cut(s)	223, 444
HpyF10VI	GCNNNNNNNGC	2 cut(s)	229, 415
HpyF3I	CTNAG	3 cut(s)	6, 354, 414
HpySE526I	ACGT	1 cut(s)	509
Hsp92II	CATG	2 cut(s)	94, 368
Kpn2I	TCCGGA	1 cut(s)	448
LmnI	GCTCC	2 cut(s)	127, 287
LpnPI	CCDG	6 cut(s)	34, 143, 150, 385, 462, 509
Lsp1109I	GCAGC	1 cut(s)	366
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	3 cut(s)	26, 78, 201
MaeII	ACGT	1 cut(s)	509
MaeIII	GTNAC	4 cut(s)	118, 167, 257, 347
MboII	GAAGA	3 cut(s)	64, 82, 228
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	3 cut(s)	141, 173, 293
MluI	ACGCGT	1 cut(s)	30
MluNI	TGGCCA	1 cut(s)	89
MlyI	GAGTC	1 cut(s)	82
MnlI	CCTC	2 cut(s)	58, 469
Mox20I	TGGCCA	1 cut(s)	89
MroI	TCCGGA	1 cut(s)	448
MscI	TGGCCA	1 cut(s)	89
MslI	CAYNNNNRTG	1 cut(s)	152
Msp20I	TGGCCA	1 cut(s)	89
MspI	CCGG	4 cut(s)	137, 372, 449, 496
MspR9I	CCNGG	1 cut(s)	373
MvnI	CGCG	2 cut(s)	32, 285
MwoI	GCNNNNNNNGC	2 cut(s)	229, 415
NciI	CCSGG	1 cut(s)	373
NcoI	CCATGG	1 cut(s)	90
NlaIII	CATG	2 cut(s)	94, 368
NmuCI	GTSAC	4 cut(s)	118, 167, 257, 347
PkrI	GCNGC	2 cut(s)	381, 411
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
RsaI	GTAC	2 cut(s)	432, 515
RsaNI	GTAC	2 cut(s)	431, 514
RseI	CAYNNNNRTG	1 cut(s)	152
SatI	GCNGC	2 cut(s)	380, 410
SchI	GAGTC	1 cut(s)	82
ScrFI	CCNGG	1 cut(s)	373
SetI	ASST	9 cut(s)	60, 132, 206, 256, 314, 381, 432, 441, 512
SfaNI	GCATC	1 cut(s)	232
SmiMI	CAYNNNNRTG	1 cut(s)	152
Sse9I	AATT	3 cut(s)	141, 173, 293
SsiI	CCGC	3 cut(s)	266, 285, 410
SspMI	CTAG	3 cut(s)	26, 78, 201
StyD4I	CCNGG	1 cut(s)	371
StyI	CCWWGG	2 cut(s)	77, 90
TaiI	ACGT	1 cut(s)	512
TasI	AATT	3 cut(s)	141, 173, 293
TauI	GCSGC	1 cut(s)	412
TseFI	GTSAC	4 cut(s)	118, 167, 257, 347
TseI	GCWGC	1 cut(s)	379
Tsp45I	GTSAC	4 cut(s)	118, 167, 257, 347
TspDTI	ATGAA	2 cut(s)	128, 350
XapI	RAATTY	2 cut(s)	173, 293
XmaJI	CCTAGG	1 cut(s)	77
XspI	CTAG	3 cut(s)	26, 78, 201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.