Rroxscaffold_3G00259650

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0016328
Physical Location & Seq
Forward (+)
54066010 .. 54066687
678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00259650.1

Sequence Viewer

Length: 678 bp
ATGGCTAGTCCGTTTAACCCGAGAGAGCAAGTAAAGCCCTTAGCCCCATCATCAAGATACAGCGTTCGCAGCCATGACTTGGAAGACGACGTCCCTTCCCTCCACATAACTAAGTTCAGCCAAAGAAATTACTACTGCTGCGGCCTCGCCGCTGCCATGTTCTTGATCCTCGCCGTCATCGCCATCGTCCTCGGCTTCACCGTCTTCCACGTGAAGGGCCCGAGGATCACGATGAACGGCGTCACGATCGAACAACTGACGAGTACTGCTAACGGAAGTTTACAGACCGATTCCAATATCACTCTTCTGGCGGATGTCTCGATCAAGAACCCTAACGTGGCGTCGTTCAAGTATGAAAACACGACCACTTTGGTTTACTTCTACGGGACGGAGGTCGGCGAGGGGAGGAGCCCGGCGGGGGTGGCGAAGGCGAGGAGGACGATGAGGATGAACATGACGGTGGATATTGTTCCGGCGAAGATCGTAGCCGTGCCGGAGTTTTCCAAAGAGTTTGCGGCAAGGGTGTTGAATTTGACTAGCTTTACGAGAGTTCATGGCAAGGTGAAAGTTGTTATGGTGAAGAGGAATGTTGTGGTTGACCTGAATTGTACCATGACATACAATTTTACAAGCCAAGGGATTCAGGGAGATAAATGCAAACAGCGAGTTAGACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

225

Amino Acids

24.89

Weight (kDa)

9.69

Isoelectric Point (pI)

37.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 106 - 204 4.4e-09 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03460
malus_domestica MD06G1094700.v1.1 MD14G1114900.v1.1
prunus_persica Prupe.5G109900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0196201
rosa_laevigata RLG00000004052
rosa_multiflora Rmu_sc0007292.1_g000014
rosa_roxburghii Rroxscaffold_1G00000810 Rroxscaffold_3G00259650 Rroxscaffold_3G00259660
rosa_rugosa Rorug07G0032000
rosa_samantha Rh7BG159200 Rh7CG163200 Rh7DG158500
rosa_wichuraiana Rw7G013480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 93
AccB7I CCANNNNNTGG 1 cut(s) 79
AciI CCGC 5 cut(s) 141, 150, 311, 416, 515
AclWI GGATC 2 cut(s) 160, 233
AcsI RAATTY 1 cut(s) 529
AcvI CACGTG 1 cut(s) 211
AcyI GRCGYC 3 cut(s) 90, 240, 341
AfaI GTAC 2 cut(s) 265, 610
AfiI CCNNNNNNNGG 4 cut(s) 79, 214, 337, 418
AgsI TTSAA 2 cut(s) 349, 529
AluBI AGCT 1 cut(s) 540
AluI AGCT 1 cut(s) 540
Alw26I GTCTC 1 cut(s) 322
AlwI GGATC 2 cut(s) 160, 233
Ama87I CYCGRG 2 cut(s) 19, 220
AoxI GGCC 2 cut(s) 142, 217
ApaI GGGCCC 1 cut(s) 221
ApeKI GCWGC 3 cut(s) 69, 138, 152
ApoI RAATTY 1 cut(s) 529
AspS9I GGNCC 2 cut(s) 217, 218
AsuC2I CCSGG 1 cut(s) 413
AsuHPI GGTGA 3 cut(s) 190, 574, 589
AvaI CYCGRG 2 cut(s) 19, 220
BaeGI GKGCMC 1 cut(s) 221
BanII GRGCYC 2 cut(s) 221, 413
BbrPI CACGTG 1 cut(s) 211
BbsI GAAGAC 2 cut(s) 90, 196
BbvI GCAGC 3 cut(s) 81, 125, 139
BccI CCATC 2 cut(s) 55, 191
BceAI ACGGC 3 cut(s) 158, 253, 473
BcnI CCSGG 1 cut(s) 413
BcoDI GTCTC 1 cut(s) 322
BfaI CTAG 2 cut(s) 6, 537
BisI GCNGC 6 cut(s) 70, 139, 142, 150, 153, 516
BlsI GCNGC 6 cut(s) 71, 140, 143, 151, 154, 517
BmcAI AGTACT 1 cut(s) 265
Bme1390I CCNGG 1 cut(s) 413
BmeT110I CYCGRG 2 cut(s) 19, 220
BmgT120I GGNCC 2 cut(s) 217, 218
BmiI GGNNCC 2 cut(s) 219, 410
BmrFI CCNGG 1 cut(s) 413
BoxI GACNNNNGTC 1 cut(s) 392
BpiI GAAGAC 2 cut(s) 90, 196
Bpu10I CCTNAGC 1 cut(s) 40
BpuMI CCSGG 1 cut(s) 413
BsaAI YACGTR 1 cut(s) 211
BsaHI GRCGYC 3 cut(s) 90, 240, 341
BsaJI CCNNGG 3 cut(s) 190, 221, 634
Bsc4I CCNNNNNNNGG 4 cut(s) 79, 214, 337, 418
BseDI CCNNGG 3 cut(s) 190, 221, 634
BseGI GGATG 2 cut(s) 319, 453
BseLI CCNNNNNNNGG 4 cut(s) 79, 214, 337, 418
BseRI GAGGAG 2 cut(s) 421, 448
BseSI GKGCMC 1 cut(s) 221
BseXI GCAGC 3 cut(s) 81, 125, 139
Bsh1285I CGRYCG 1 cut(s) 249
BshFI GGCC 2 cut(s) 144, 219
BsiEI CGRYCG 1 cut(s) 249
BsiHKCI CYCGRG 2 cut(s) 19, 220
BsiSI CCGG 3 cut(s) 413, 473, 494
BslFI GGGAC 2 cut(s) 77, 400
BslI CCNNNNNNNGG 4 cut(s) 79, 214, 337, 418
BsmAI GTCTC 1 cut(s) 322
BsmFI GGGAC 2 cut(s) 77, 400
BsnI GGCC 2 cut(s) 144, 219
BsoBI CYCGRG 2 cut(s) 19, 220
Bsp120I GGGCCC 1 cut(s) 217
Bsp1286I GDGCHC 2 cut(s) 221, 413
Bsp143I GATC 5 cut(s) 165, 225, 246, 321, 480
BspACI CCGC 5 cut(s) 141, 150, 311, 416, 515
BspANI GGCC 2 cut(s) 144, 219
BspLI GGNNCC 2 cut(s) 219, 410
BspPI GGATC 2 cut(s) 160, 233
BssECI CCNNGG 3 cut(s) 190, 221, 634
BssMI GATC 5 cut(s) 165, 225, 246, 321, 480
BssNI GRCGYC 3 cut(s) 90, 240, 341
BssT1I CCWWGG 1 cut(s) 634
Bst4CI ACNGT 2 cut(s) 202, 460
Bst6I CTCTTC 2 cut(s) 309, 575
BstACI GRCGYC 3 cut(s) 90, 240, 341
BstBAI YACGTR 1 cut(s) 211
BstDEI CTNAG 2 cut(s) 40, 111
BstF5I GGATG 2 cut(s) 319, 453
BstKTI GATC 5 cut(s) 168, 228, 249, 324, 483
BstMAI GTCTC 1 cut(s) 322
BstMBI GATC 5 cut(s) 165, 225, 246, 321, 480
BstMCI CGRYCG 1 cut(s) 249
BstMWI GCNNNNNNNGC 4 cut(s) 34, 69, 179, 422
BstPAI GACNNNNGTC 1 cut(s) 392
BstSCI CCNGG 1 cut(s) 411
BstSLI GKGCMC 1 cut(s) 221
BstV1I GCAGC 3 cut(s) 81, 125, 139
BstV2I GAAGAC 2 cut(s) 90, 196
BsuRI GGCC 2 cut(s) 144, 219
BtgZI GCGATG 1 cut(s) 163
BtsCI GGATG 2 cut(s) 319, 453
Cfr13I GGNCC 2 cut(s) 217, 218
CseI GACGC 2 cut(s) 229, 330
Csp6I GTAC 2 cut(s) 264, 609
CviAII CATG 5 cut(s) 74, 157, 454, 554, 613
CviQI GTAC 2 cut(s) 264, 609
DdeI CTNAG 2 cut(s) 40, 111
DpnI GATC 5 cut(s) 167, 227, 248, 323, 482
DpnII GATC 5 cut(s) 165, 225, 246, 321, 480
Eam1104I CTCTTC 2 cut(s) 309, 575
EarI CTCTTC 2 cut(s) 309, 575
EciI GGCGGA 1 cut(s) 326
Eco130I CCWWGG 1 cut(s) 634
Eco24I GRGCYC 2 cut(s) 221, 413
Eco72I CACGTG 1 cut(s) 211
Eco88I CYCGRG 2 cut(s) 19, 220
EcoO109I RGGNCCY 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 634
EcoT38I GRGCYC 2 cut(s) 221, 413
ErhI CCWWGG 1 cut(s) 634
FaeI CATG 5 cut(s) 77, 160, 457, 557, 616
FaiI YATR 9 cut(s) 75, 107, 158, 354, 455, 555, 575, 614, 619
FaqI GGGAC 2 cut(s) 77, 400
FatI CATG 5 cut(s) 73, 156, 453, 553, 612
FauI CCCGC 1 cut(s) 409
Fnu4HI GCNGC 6 cut(s) 70, 139, 142, 150, 153, 516
FokI GGATG 2 cut(s) 326, 460
FriOI GRGCYC 2 cut(s) 221, 413
Fsp4HI GCNGC 6 cut(s) 70, 139, 142, 150, 153, 516
FspBI CTAG 2 cut(s) 6, 537
GluI GCNGC 6 cut(s) 70, 139, 142, 150, 153, 516
HaeIII GGCC 2 cut(s) 144, 219
HapII CCGG 3 cut(s) 413, 473, 494
HgaI GACGC 2 cut(s) 229, 330
Hin1I GRCGYC 3 cut(s) 90, 240, 341
Hin1II CATG 5 cut(s) 77, 160, 457, 557, 616
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
HinfI GANTC 2 cut(s) 290, 640
HpaII CCGG 3 cut(s) 413, 473, 494
HphI GGTGA 3 cut(s) 190, 574, 589
Hpy166II GTNNAC 3 cut(s) 281, 376, 598
Hpy188III TCNNGA 6 cut(s) 54, 163, 229, 244, 319, 325
Hpy8I GTNNAC 3 cut(s) 281, 376, 598
Hpy99I CGWCG 2 cut(s) 92, 346
HpyAV CCTTC 3 cut(s) 105, 208, 421
HpyCH4III ACNGT 2 cut(s) 202, 460
HpyCH4IV ACGT 3 cut(s) 90, 210, 336
HpyCH4V TGCA 1 cut(s) 657
HpyF10VI GCNNNNNNNGC 4 cut(s) 34, 69, 179, 422
HpyF3I CTNAG 2 cut(s) 40, 111
HpySE526I ACGT 3 cut(s) 90, 210, 336
Hsp92I GRCGYC 3 cut(s) 90, 240, 341
Hsp92II CATG 5 cut(s) 77, 160, 457, 557, 616
Kzo9I GATC 5 cut(s) 165, 225, 246, 321, 480
LmnI GCTCC 1 cut(s) 408
LpnPI CCDG 6 cut(s) 293, 426, 486, 507, 614, 629
Lsp1109I GCAGC 3 cut(s) 81, 125, 139
MaeI CTAG 2 cut(s) 6, 537
MaeII ACGT 3 cut(s) 90, 210, 336
MaeIII GTNAC 1 cut(s) 241
MalI GATC 5 cut(s) 167, 227, 248, 323, 482
MboI GATC 5 cut(s) 165, 225, 246, 321, 480
MboII GAAGA 5 cut(s) 95, 196, 296, 490, 592
MhlI GDGCHC 2 cut(s) 221, 413
MluCI AATT 4 cut(s) 127, 529, 604, 622
MseI TTAA 1 cut(s) 15
MslI CAYNNNNRTG 1 cut(s) 458
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 3 cut(s) 413, 473, 494
MspR9I CCNGG 1 cut(s) 413
MwoI GCNNNNNNNGC 4 cut(s) 34, 69, 179, 422
NciI CCSGG 1 cut(s) 413
NdeII GATC 5 cut(s) 165, 225, 246, 321, 480
NlaIII CATG 5 cut(s) 77, 160, 457, 557, 616
NlaIV GGNNCC 2 cut(s) 219, 410
NmeAIII GCCGAG 1 cut(s) 171
NmuCI GTSAC 1 cut(s) 241
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PfeI GAWTC 2 cut(s) 290, 640
PflFI GACNNNGTC 1 cut(s) 89
PflMI CCANNNNNTGG 1 cut(s) 79
PkrI GCNGC 6 cut(s) 71, 140, 143, 151, 154, 517
Ple19I CGATCG 1 cut(s) 249
PmaCI CACGTG 1 cut(s) 211
PmlI CACGTG 1 cut(s) 211
Ppu21I YACGTR 1 cut(s) 211
PshAI GACNNNNGTC 1 cut(s) 392
PspCI CACGTG 1 cut(s) 211
PspN4I GGNNCC 2 cut(s) 219, 410
PspOMI GGGCCC 1 cut(s) 217
PspPI GGNCC 2 cut(s) 217, 218
PsyI GACNNNGTC 1 cut(s) 89
PvuI CGATCG 1 cut(s) 249
RsaI GTAC 2 cut(s) 265, 610
RsaNI GTAC 2 cut(s) 264, 609
RseI CAYNNNNRTG 1 cut(s) 458
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 6 cut(s) 70, 139, 142, 150, 153, 516
Sau3AI GATC 5 cut(s) 165, 225, 246, 321, 480
Sau96I GGNCC 2 cut(s) 217, 218
ScaI AGTACT 1 cut(s) 265
ScrFI CCNGG 1 cut(s) 413
SduI GDGCHC 2 cut(s) 221, 413
SetI ASST 7 cut(s) 93, 213, 339, 396, 542, 564, 603
SmiMI CAYNNNNRTG 1 cut(s) 458
Sse9I AATT 4 cut(s) 127, 529, 604, 622
SsiI CCGC 5 cut(s) 141, 150, 311, 416, 515
SspMI CTAG 2 cut(s) 6, 537
StyD4I CCNGG 1 cut(s) 411
StyI CCWWGG 1 cut(s) 634
TaaI ACNGT 2 cut(s) 202, 460
TaiI ACGT 3 cut(s) 93, 213, 339
TaqI TCGA 2 cut(s) 249, 320
TaqII GACCGA 1 cut(s) 302
TasI AATT 4 cut(s) 127, 529, 604, 622
TatI WGTACW 1 cut(s) 263
TauI GCSGC 3 cut(s) 144, 152, 518
TfiI GAWTC 2 cut(s) 290, 640
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 3 cut(s) 69, 138, 152
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 4 cut(s) 248, 369, 464, 542
TspGWI ACGGA 2 cut(s) 288, 404
Tth111I GACNNNGTC 1 cut(s) 89
Van91I CCANNNNNTGG 1 cut(s) 79
XapI RAATTY 1 cut(s) 529
XspI CTAG 2 cut(s) 6, 537
ZraI GACGTC 1 cut(s) 91
ZrmI AGTACT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.