MD14G1114900.v1.1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0016328
Physical Location & Seq
Forward (+)
18633071 .. 18633712
642 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1114900.v1.1.491

Sequence Viewer

Length: 642 bp
ATGGCTTCTCCGAAAGAACAAGTCAAGCCTTTAGCCCCAGGAAACTCACACCATCTCCGCAGTGATGAAGAGGAAGTTGGCTCCTTGCACATAAAGCTCGGGCAAAGAAAATACGTACAATGTTGCGGCTGTGTCTCTGCCGTGTTCTTAATCATAGCTGTAACAGCCATAGTCCTCGGATTCACCATGTTTCACGTAAAGGATCCGAAGATCAAGATGAACGAGGTCACATTCCAACGGCTGGAGTTTTCCAACCGAACCCTACGTGCGGATATTAATATAACACTTATTGCGGATGTCTCCATCAAGAACCCTAACGTGGCATCTTTCAAGTATAGCAATGCCACCACTATGGTTTACTACAGTAGGACGGAGGTCGGCGAAGGGAGGACTCCGGCGGGAGTGGCAAAGGCGAGGCGGACGTCGAGGATGAATGTTACGGTGGATATTGTTCGGGGGAAGATCTTGGGCGTGCCGGGGTTCGTGAGCGAGGTGGCTACGGGGGAACTGACCATGACGACTTATACGAGGATTCAGGGTACGGTGAAAGTCGCCACGGTCAAGAAAAATGTAGTGGTTGAATTGAATTGTACCGTACGGTACAATTTTTCAAGTGGGAAGATTCAAAGAAAAGATTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

214

Amino Acids

23.52

Weight (kDa)

9.73

Isoelectric Point (pI)

24.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 100 - 198 9.5e-10 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03460
malus_domestica MD06G1094700.v1.1 MD14G1114900.v1.1
prunus_persica Prupe.5G109900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0196201
rosa_laevigata RLG00000004052
rosa_multiflora Rmu_sc0007292.1_g000014
rosa_roxburghii Rroxscaffold_1G00000810 Rroxscaffold_3G00259650 Rroxscaffold_3G00259660
rosa_rugosa Rorug07G0032000
rosa_samantha Rh7BG159200 Rh7CG163200 Rh7DG158500
rosa_wichuraiana Rw7G013480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 425
AccB7I CCANNNNNTGG 1 cut(s) 241
AciI CCGC 6 cut(s) 58, 126, 269, 293, 398, 418
AclWI GGATC 2 cut(s) 197, 210
AcyI GRCGYC 1 cut(s) 422
AfaI GTAC 5 cut(s) 117, 541, 592, 597, 602
AfiI CCNNNNNNNGG 3 cut(s) 241, 268, 319
AgsI TTSAA 5 cut(s) 331, 581, 586, 612, 626
AjnI CCWGG 1 cut(s) 37
AjuI GAANNNNNNNTTGG 2 cut(s) 60, 92
AluBI AGCT 2 cut(s) 97, 158
AluI AGCT 2 cut(s) 97, 158
Alw26I GTCTC 2 cut(s) 139, 304
AlwI GGATC 2 cut(s) 197, 210
Ama87I CYCGRG 1 cut(s) 98
AseI ATTAAT 1 cut(s) 276
AsuC2I CCSGG 1 cut(s) 477
AsuHPI GGTGA 2 cut(s) 175, 556
AvaI CYCGRG 1 cut(s) 98
BamHI GGATCC 1 cut(s) 202
BccI CCATC 2 cut(s) 60, 311
BceAI ACGGC 2 cut(s) 125, 254
BciT130I CCWGG 1 cut(s) 39
BcnI CCSGG 1 cut(s) 477
BcoDI GTCTC 2 cut(s) 139, 304
BfmI CTRYAG 1 cut(s) 361
BglII AGATCT 1 cut(s) 462
BisI GCNGC 1 cut(s) 127
BlsI GCNGC 1 cut(s) 128
Bme1390I CCNGG 2 cut(s) 39, 477
BmeT110I CYCGRG 1 cut(s) 98
BmiI GGNNCC 2 cut(s) 82, 204
BmrFI CCNGG 2 cut(s) 39, 477
BmsI GCATC 1 cut(s) 332
BoxI GACNNNNGTC 1 cut(s) 374
BpmI CTGGAG 1 cut(s) 263
BpuMI CCSGG 1 cut(s) 477
BsaAI YACGTR 3 cut(s) 115, 196, 266
BsaHI GRCGYC 1 cut(s) 422
BsaJI CCNNGG 4 cut(s) 37, 175, 476, 555
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
Bsc4I CCNNNNNNNGG 3 cut(s) 241, 268, 319
Bse3DI GCAATG 1 cut(s) 346
BseBI CCWGG 1 cut(s) 39
BseDI CCNNGG 4 cut(s) 37, 175, 476, 555
BseGI GGATG 2 cut(s) 301, 435
BseLI CCNNNNNNNGG 3 cut(s) 241, 268, 319
BseMI GCAATG 1 cut(s) 346
BsiHKCI CYCGRG 1 cut(s) 98
BsiSI CCGG 2 cut(s) 395, 476
BsiWI CGTACG 1 cut(s) 595
BslI CCNNNNNNNGG 3 cut(s) 241, 268, 319
BsmAI GTCTC 2 cut(s) 139, 304
BsoBI CYCGRG 1 cut(s) 98
Bsp143I GATC 3 cut(s) 202, 210, 462
BspACI CCGC 6 cut(s) 58, 126, 269, 293, 398, 418
BspLI GGNNCC 2 cut(s) 82, 204
BspPI GGATC 2 cut(s) 197, 210
BsrDI GCAATG 1 cut(s) 346
BssECI CCNNGG 4 cut(s) 37, 175, 476, 555
BssMI GATC 3 cut(s) 202, 210, 462
BssNI GRCGYC 1 cut(s) 422
Bst2UI CCWGG 1 cut(s) 39
Bst4CI ACNGT 6 cut(s) 365, 442, 544, 559, 595, 600
Bst6I CTCTTC 1 cut(s) 63
BstACI GRCGYC 1 cut(s) 422
BstBAI YACGTR 3 cut(s) 115, 196, 266
BstC8I GCNNGC 1 cut(s) 473
BstDSI CCRYGG 1 cut(s) 555
BstF5I GGATG 2 cut(s) 301, 435
BstKTI GATC 3 cut(s) 205, 213, 465
BstMAI GTCTC 2 cut(s) 139, 304
BstMBI GATC 3 cut(s) 202, 210, 462
BstMWI GCNNNNNNNGC 3 cut(s) 94, 164, 404
BstNI CCWGG 1 cut(s) 39
BstPAI GACNNNNGTC 1 cut(s) 374
BstSCI CCNGG 2 cut(s) 37, 475
BstSFI CTRYAG 1 cut(s) 361
BstSNI TACGTA 1 cut(s) 115
BstX2I RGATCY 2 cut(s) 202, 462
BstXI CCANNNNNNTGG 1 cut(s) 352
BstYI RGATCY 2 cut(s) 202, 462
BtgI CCRYGG 1 cut(s) 555
BtsCI GGATG 2 cut(s) 301, 435
BtsI GCAGTG 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 67
Cac8I GCNNGC 1 cut(s) 473
Csp6I GTAC 5 cut(s) 116, 540, 591, 596, 601
CviAII CATG 2 cut(s) 187, 514
CviQI GTAC 5 cut(s) 116, 540, 591, 596, 601
DpnI GATC 3 cut(s) 204, 212, 464
DpnII GATC 3 cut(s) 202, 210, 462
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
EciI GGCGGA 1 cut(s) 433
Eco105I TACGTA 1 cut(s) 115
Eco88I CYCGRG 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 37
FaeI CATG 2 cut(s) 190, 517
FaiI YATR 9 cut(s) 92, 155, 170, 188, 281, 336, 353, 515, 525
FatI CATG 2 cut(s) 186, 513
FauI CCCGC 1 cut(s) 391
Fnu4HI GCNGC 1 cut(s) 127
FokI GGATG 2 cut(s) 308, 442
Fsp4HI GCNGC 1 cut(s) 127
GluI GCNGC 1 cut(s) 127
GsuI CTGGAG 1 cut(s) 263
HapII CCGG 2 cut(s) 395, 476
Hin1I GRCGYC 1 cut(s) 422
Hin1II CATG 2 cut(s) 190, 517
HinfI GANTC 4 cut(s) 180, 391, 532, 622
HpaII CCGG 2 cut(s) 395, 476
HphI GGTGA 2 cut(s) 175, 556
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 3 cut(s) 12, 179, 207
Hpy188III TCNNGA 4 cut(s) 214, 307, 484, 562
Hpy8I GTNNAC 1 cut(s) 358
Hpy99I CGWCG 1 cut(s) 427
HpyAV CCTTC 1 cut(s) 377
HpyCH4III ACNGT 6 cut(s) 365, 442, 544, 559, 595, 600
HpyCH4IV ACGT 5 cut(s) 114, 195, 265, 318, 422
HpyCH4V TGCA 1 cut(s) 88
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 164, 404
HpySE526I ACGT 5 cut(s) 114, 195, 265, 318, 422
Hsp92I GRCGYC 1 cut(s) 422
Hsp92II CATG 2 cut(s) 190, 517
Kzo9I GATC 3 cut(s) 202, 210, 462
LmnI GCTCC 1 cut(s) 86
LpnPI CCDG 6 cut(s) 24, 51, 227, 408, 489, 521
LweI GCATC 1 cut(s) 332
MaeII ACGT 5 cut(s) 114, 195, 265, 318, 422
MaeIII GTNAC 3 cut(s) 160, 226, 436
MalI GATC 3 cut(s) 204, 212, 464
MboI GATC 3 cut(s) 202, 210, 462
MboII GAAGA 4 cut(s) 80, 220, 472, 631
MflI RGATCY 2 cut(s) 202, 462
MluCI AATT 3 cut(s) 581, 586, 604
MlyI GAGTC 1 cut(s) 385
MmeI TCCRAC 2 cut(s) 259, 276
MnlI CCTC 9 cut(s) 64, 185, 217, 367, 381, 408, 420, 484, 522
MseI TTAA 2 cut(s) 149, 276
MslI CAYNNNNRTG 1 cut(s) 350
MspI CCGG 2 cut(s) 395, 476
MspR9I CCNGG 2 cut(s) 39, 477
MvaI CCWGG 1 cut(s) 39
MwoI GCNNNNNNNGC 3 cut(s) 94, 164, 404
NciI CCSGG 1 cut(s) 477
NdeII GATC 3 cut(s) 202, 210, 462
NlaIII CATG 2 cut(s) 190, 517
NlaIV GGNNCC 2 cut(s) 82, 204
NmuCI GTSAC 1 cut(s) 226
PcsI WCGNNNNNNNCGW 1 cut(s) 524
PfeI GAWTC 3 cut(s) 180, 532, 622
Pfl23II CGTACG 1 cut(s) 595
PflMI CCANNNNNTGG 1 cut(s) 241
PkrI GCNGC 1 cut(s) 128
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
Ppu21I YACGTR 3 cut(s) 115, 196, 266
PshAI GACNNNNGTC 1 cut(s) 374
PshBI ATTAAT 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PspLI CGTACG 1 cut(s) 595
PspN4I GGNNCC 2 cut(s) 82, 204
PsuI RGATCY 2 cut(s) 202, 462
RsaI GTAC 5 cut(s) 117, 541, 592, 597, 602
RsaNI GTAC 5 cut(s) 116, 540, 591, 596, 601
RseI CAYNNNNRTG 1 cut(s) 350
SaqAI TTAA 2 cut(s) 149, 276
SatI GCNGC 1 cut(s) 127
Sau3AI GATC 3 cut(s) 202, 210, 462
SchI GAGTC 1 cut(s) 385
ScrFI CCNGG 2 cut(s) 39, 477
SfaNI GCATC 1 cut(s) 332
SfcI CTRYAG 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 350
SnaBI TACGTA 1 cut(s) 115
Sse9I AATT 3 cut(s) 581, 586, 604
SsiI CCGC 6 cut(s) 58, 126, 269, 293, 398, 418
StyD4I CCNGG 2 cut(s) 37, 475
TaaI ACNGT 6 cut(s) 365, 442, 544, 559, 595, 600
TaiI ACGT 5 cut(s) 117, 198, 268, 321, 425
TaqI TCGA 1 cut(s) 425
TasI AATT 3 cut(s) 581, 586, 604
TauI GCSGC 1 cut(s) 129
TfiI GAWTC 3 cut(s) 180, 532, 622
Tru1I TTAA 2 cut(s) 149, 276
Tru9I TTAA 2 cut(s) 149, 276
TscAI CASTG 1 cut(s) 67
TseFI GTSAC 1 cut(s) 226
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 3 cut(s) 81, 233, 446
TspGWI ACGGA 1 cut(s) 386
TspRI CASTG 1 cut(s) 67
Van91I CCANNNNNTGG 1 cut(s) 241
VspI ATTAAT 1 cut(s) 276
ZraI GACGTC 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.