Rh7BG159200

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0016328
Physical Location & Seq
Reverse (-)
12011449 .. 12012765
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG159200.1

Sequence Viewer

Length: 660 bp
ATGGCTAGTCCGTTTAACCCGAGAGAGCAAGTAAAGCCCTTAGCCCCATCATCAAGATACAGCGTTCGCAGCCATGACTTGGAAGACGACGTCCCTTCCCTCCACATAACTAAGTTCAGCCAAAGAAATTACTACTGCTGCGGCCTCGCCGCCGCCATGTTCTTGATCCTCGCCGTCATCGCCATCGTCCTCGGCTTCACCGTCTTCCATGTGAAGGGCCCGAGGATCACGATGAACGGTTTCACGATCGAACAGCTGACGAGTACTGCTAACGGAAGTTTACAGACCGGTTCCAATATCACTCTTCTGGCGGATGTCTCGATCAAGAACCCTAACGTGGCGTCGTTCAAGTATGAAAACACGACCACTTTGGTTTACGTCAACGGGACGGAGGTCGGCGAGGGGAGGAGCCCGGCGGGGGTGGCGAAGGCGAGGAGGACGATGAGGATGAACGTGACGGTGGATATTGTTCCGGCGAAGATCCGGACCGTGCCGGAGGAAGGGGTGTTAAATTTTACTACCTTTACGAGAGTTAATGGCAACGTGAAAGTTGTTATGGTGAAGAGGAATGTTGTGGTTGAGCTGAATTGTACCATGACATACAATTTTACAAGCCAAGGGATTCAGAGACATAAATGCAAACCGCGAGTTAGACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

219

Amino Acids

24.2

Weight (kDa)

9.88

Isoelectric Point (pI)

38.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 106 - 198 7.4e-11 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03460
malus_domestica MD06G1094700.v1.1 MD14G1114900.v1.1
prunus_persica Prupe.5G109900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0196201
rosa_laevigata RLG00000004052
rosa_multiflora Rmu_sc0007292.1_g000014
rosa_roxburghii Rroxscaffold_1G00000810 Rroxscaffold_3G00259650 Rroxscaffold_3G00259660
rosa_rugosa Rorug07G0032000
rosa_samantha Rh7BG159200 Rh7CG163200 Rh7DG158500
rosa_wichuraiana Rw7G013480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 93
AccB7I CCANNNNNTGG 1 cut(s) 79
AccII CGCG 1 cut(s) 646
AccIII TCCGGA 1 cut(s) 483
AciI CCGC 6 cut(s) 141, 150, 153, 311, 416, 644
AclWI GGATC 3 cut(s) 160, 233, 475
AcsI RAATTY 1 cut(s) 511
AcyI GRCGYC 2 cut(s) 90, 341
AfaI GTAC 2 cut(s) 265, 592
AfiI CCNNNNNNNGG 5 cut(s) 79, 214, 337, 418, 500
AgeI ACCGGT 1 cut(s) 287
AgsI TTSAA 1 cut(s) 349
AluBI AGCT 2 cut(s) 256, 583
AluI AGCT 2 cut(s) 256, 583
Alw26I GTCTC 2 cut(s) 322, 622
AlwI GGATC 3 cut(s) 160, 233, 475
Ama87I CYCGRG 2 cut(s) 19, 220
Aor13HI TCCGGA 1 cut(s) 483
AoxI GGCC 2 cut(s) 142, 217
ApaI GGGCCC 1 cut(s) 221
ApeKI GCWGC 2 cut(s) 69, 138
ApoI RAATTY 1 cut(s) 511
AsiGI ACCGGT 1 cut(s) 287
Asp700I GAANNNNTTC 1 cut(s) 239
AspS9I GGNCC 3 cut(s) 217, 218, 486
AsuC2I CCSGG 1 cut(s) 413
AsuHPI GGTGA 2 cut(s) 190, 571
AvaI CYCGRG 2 cut(s) 19, 220
AvaII GGWCC 1 cut(s) 486
BaeGI GKGCMC 1 cut(s) 221
BanII GRGCYC 2 cut(s) 221, 413
BbsI GAAGAC 2 cut(s) 90, 196
BbvI GCAGC 2 cut(s) 81, 125
BccI CCATC 2 cut(s) 55, 191
BceAI ACGGC 1 cut(s) 158
BcnI CCSGG 1 cut(s) 413
BcoDI GTCTC 2 cut(s) 322, 622
BfaI CTAG 1 cut(s) 6
BisI GCNGC 5 cut(s) 70, 139, 142, 150, 153
BlsI GCNGC 5 cut(s) 71, 140, 143, 151, 154
BmcAI AGTACT 1 cut(s) 265
Bme1390I CCNGG 1 cut(s) 413
Bme18I GGWCC 1 cut(s) 486
BmeT110I CYCGRG 2 cut(s) 19, 220
BmgT120I GGNCC 3 cut(s) 217, 218, 486
BmiI GGNNCC 3 cut(s) 219, 292, 410
BmrFI CCNGG 1 cut(s) 413
BoxI GACNNNNGTC 1 cut(s) 392
BpiI GAAGAC 2 cut(s) 90, 196
Bpu10I CCTNAGC 1 cut(s) 40
BpuMI CCSGG 1 cut(s) 413
BsaHI GRCGYC 2 cut(s) 90, 341
BsaJI CCNNGG 3 cut(s) 190, 221, 616
BsaWI WCCGGW 2 cut(s) 287, 483
Bsc4I CCNNNNNNNGG 5 cut(s) 79, 214, 337, 418, 500
Bse118I RCCGGY 1 cut(s) 287
BseAI TCCGGA 1 cut(s) 483
BseDI CCNNGG 3 cut(s) 190, 221, 616
BseGI GGATG 2 cut(s) 319, 453
BseLI CCNNNNNNNGG 5 cut(s) 79, 214, 337, 418, 500
BseRI GAGGAG 2 cut(s) 421, 448
BseSI GKGCMC 1 cut(s) 221
BseXI GCAGC 2 cut(s) 81, 125
Bsh1236I CGCG 1 cut(s) 646
Bsh1285I CGRYCG 1 cut(s) 249
BshFI GGCC 2 cut(s) 144, 219
BshTI ACCGGT 1 cut(s) 287
BsiEI CGRYCG 1 cut(s) 249
BsiHKCI CYCGRG 2 cut(s) 19, 220
BsiSI CCGG 5 cut(s) 288, 413, 473, 484, 494
BslFI GGGAC 2 cut(s) 77, 400
BslI CCNNNNNNNGG 5 cut(s) 79, 214, 337, 418, 500
BsmAI GTCTC 2 cut(s) 322, 622
BsmFI GGGAC 2 cut(s) 77, 400
BsnI GGCC 2 cut(s) 144, 219
BsoBI CYCGRG 2 cut(s) 19, 220
Bsp120I GGGCCC 1 cut(s) 217
Bsp1286I GDGCHC 2 cut(s) 221, 413
Bsp13I TCCGGA 1 cut(s) 483
Bsp143I GATC 5 cut(s) 165, 225, 246, 321, 480
BspACI CCGC 6 cut(s) 141, 150, 153, 311, 416, 644
BspANI GGCC 2 cut(s) 144, 219
BspEI TCCGGA 1 cut(s) 483
BspFNI CGCG 1 cut(s) 646
BspLI GGNNCC 3 cut(s) 219, 292, 410
BspPI GGATC 3 cut(s) 160, 233, 475
BsrFI RCCGGY 1 cut(s) 287
BssAI RCCGGY 1 cut(s) 287
BssECI CCNNGG 3 cut(s) 190, 221, 616
BssMI GATC 5 cut(s) 165, 225, 246, 321, 480
BssNI GRCGYC 2 cut(s) 90, 341
BssT1I CCWWGG 1 cut(s) 616
Bst4CI ACNGT 4 cut(s) 202, 239, 460, 490
Bst6I CTCTTC 2 cut(s) 309, 557
BstACI GRCGYC 2 cut(s) 90, 341
BstDEI CTNAG 2 cut(s) 40, 111
BstF5I GGATG 2 cut(s) 319, 453
BstFNI CGCG 1 cut(s) 646
BstKTI GATC 5 cut(s) 168, 228, 249, 324, 483
BstMAI GTCTC 2 cut(s) 322, 622
BstMBI GATC 5 cut(s) 165, 225, 246, 321, 480
BstMCI CGRYCG 1 cut(s) 249
BstMWI GCNNNNNNNGC 4 cut(s) 34, 69, 179, 422
BstPAI GACNNNNGTC 1 cut(s) 392
BstSCI CCNGG 1 cut(s) 411
BstSLI GKGCMC 1 cut(s) 221
BstUI CGCG 1 cut(s) 646
BstV1I GCAGC 2 cut(s) 81, 125
BstV2I GAAGAC 2 cut(s) 90, 196
BstX2I RGATCY 1 cut(s) 480
BstYI RGATCY 1 cut(s) 480
BsuRI GGCC 2 cut(s) 144, 219
BtgZI GCGATG 1 cut(s) 163
BtsCI GGATG 2 cut(s) 319, 453
Cfr10I RCCGGY 1 cut(s) 287
Cfr13I GGNCC 3 cut(s) 217, 218, 486
CpoI CGGWCCG 1 cut(s) 486
CseI GACGC 1 cut(s) 330
Csp6I GTAC 2 cut(s) 264, 591
CspAI ACCGGT 1 cut(s) 287
CspI CGGWCCG 1 cut(s) 486
CviAII CATG 4 cut(s) 74, 157, 209, 595
CviQI GTAC 2 cut(s) 264, 591
DdeI CTNAG 2 cut(s) 40, 111
DpnI GATC 5 cut(s) 167, 227, 248, 323, 482
DpnII GATC 5 cut(s) 165, 225, 246, 321, 480
Eam1104I CTCTTC 2 cut(s) 309, 557
EarI CTCTTC 2 cut(s) 309, 557
EciI GGCGGA 1 cut(s) 326
Eco130I CCWWGG 1 cut(s) 616
Eco24I GRGCYC 2 cut(s) 221, 413
Eco47I GGWCC 1 cut(s) 486
Eco88I CYCGRG 2 cut(s) 19, 220
EcoO109I RGGNCCY 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 616
EcoT38I GRGCYC 2 cut(s) 221, 413
ErhI CCWWGG 1 cut(s) 616
FaeI CATG 4 cut(s) 77, 160, 212, 598
FaiI YATR 9 cut(s) 75, 107, 158, 210, 354, 557, 596, 601, 633
FaqI GGGAC 2 cut(s) 77, 400
FatI CATG 4 cut(s) 73, 156, 208, 594
FauI CCCGC 1 cut(s) 409
Fnu4HI GCNGC 5 cut(s) 70, 139, 142, 150, 153
FokI GGATG 2 cut(s) 326, 460
FriOI GRGCYC 2 cut(s) 221, 413
Fsp4HI GCNGC 5 cut(s) 70, 139, 142, 150, 153
FspBI CTAG 1 cut(s) 6
GluI GCNGC 5 cut(s) 70, 139, 142, 150, 153
HaeIII GGCC 2 cut(s) 144, 219
HapII CCGG 5 cut(s) 288, 413, 473, 484, 494
HgaI GACGC 1 cut(s) 330
Hin1I GRCGYC 2 cut(s) 90, 341
Hin1II CATG 4 cut(s) 77, 160, 212, 598
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HinfI GANTC 1 cut(s) 622
HpaII CCGG 5 cut(s) 288, 413, 473, 484, 494
HphI GGTGA 2 cut(s) 190, 571
Hpy166II GTNNAC 3 cut(s) 281, 376, 382
Hpy188I TCNGA 1 cut(s) 627
Hpy188III TCNNGA 7 cut(s) 54, 163, 229, 244, 319, 325, 484
Hpy8I GTNNAC 3 cut(s) 281, 376, 382
Hpy99I CGWCG 2 cut(s) 92, 346
HpyAV CCTTC 4 cut(s) 105, 208, 421, 494
HpyCH4III ACNGT 4 cut(s) 202, 239, 460, 490
HpyCH4IV ACGT 5 cut(s) 90, 336, 378, 453, 543
HpyCH4V TGCA 1 cut(s) 639
HpyF10VI GCNNNNNNNGC 4 cut(s) 34, 69, 179, 422
HpyF3I CTNAG 2 cut(s) 40, 111
HpySE526I ACGT 5 cut(s) 90, 336, 378, 453, 543
Hsp92I GRCGYC 2 cut(s) 90, 341
Hsp92II CATG 4 cut(s) 77, 160, 212, 598
Kpn2I TCCGGA 1 cut(s) 483
Kzo9I GATC 5 cut(s) 165, 225, 246, 321, 480
LmnI GCTCC 1 cut(s) 408
LpnPI CCDG 6 cut(s) 293, 301, 426, 486, 497, 507
Lsp1109I GCAGC 2 cut(s) 81, 125
MaeI CTAG 1 cut(s) 6
MaeII ACGT 5 cut(s) 90, 336, 378, 453, 543
MaeIII GTNAC 1 cut(s) 454
MalI GATC 5 cut(s) 167, 227, 248, 323, 482
MboI GATC 5 cut(s) 165, 225, 246, 321, 480
MboII GAAGA 5 cut(s) 95, 196, 296, 490, 574
MflI RGATCY 1 cut(s) 480
MhlI GDGCHC 2 cut(s) 221, 413
MluCI AATT 4 cut(s) 127, 511, 586, 604
MroI TCCGGA 1 cut(s) 483
MroXI GAANNNNTTC 1 cut(s) 239
MseI TTAA 3 cut(s) 15, 509, 534
MspA1I CMGCKG 1 cut(s) 256
MspI CCGG 5 cut(s) 288, 413, 473, 484, 494
MspR9I CCNGG 1 cut(s) 413
MvnI CGCG 1 cut(s) 646
MwoI GCNNNNNNNGC 4 cut(s) 34, 69, 179, 422
NciI CCSGG 1 cut(s) 413
NdeII GATC 5 cut(s) 165, 225, 246, 321, 480
NlaIII CATG 4 cut(s) 77, 160, 212, 598
NlaIV GGNNCC 3 cut(s) 219, 292, 410
NmeAIII GCCGAG 1 cut(s) 171
NmuCI GTSAC 1 cut(s) 454
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PdmI GAANNNNTTC 1 cut(s) 239
PfeI GAWTC 1 cut(s) 622
PflFI GACNNNGTC 1 cut(s) 89
PflMI CCANNNNNTGG 1 cut(s) 79
PinAI ACCGGT 1 cut(s) 287
PkrI GCNGC 5 cut(s) 71, 140, 143, 151, 154
Ple19I CGATCG 1 cut(s) 249
PshAI GACNNNNGTC 1 cut(s) 392
PspN4I GGNNCC 3 cut(s) 219, 292, 410
PspOMI GGGCCC 1 cut(s) 217
PspPI GGNCC 3 cut(s) 217, 218, 486
PsuI RGATCY 1 cut(s) 480
PsyI GACNNNGTC 1 cut(s) 89
PvuI CGATCG 1 cut(s) 249
PvuII CAGCTG 1 cut(s) 256
RsaI GTAC 2 cut(s) 265, 592
RsaNI GTAC 2 cut(s) 264, 591
Rsr2I CGGWCCG 1 cut(s) 486
RsrII CGGWCCG 1 cut(s) 486
SaqAI TTAA 3 cut(s) 15, 509, 534
SatI GCNGC 5 cut(s) 70, 139, 142, 150, 153
Sau3AI GATC 5 cut(s) 165, 225, 246, 321, 480
Sau96I GGNCC 3 cut(s) 217, 218, 486
ScaI AGTACT 1 cut(s) 265
ScrFI CCNGG 1 cut(s) 413
SduI GDGCHC 2 cut(s) 221, 413
SetI ASST 9 cut(s) 93, 258, 339, 381, 396, 456, 524, 546, 585
SinI GGWCC 1 cut(s) 486
Sse9I AATT 4 cut(s) 127, 511, 586, 604
SsiI CCGC 6 cut(s) 141, 150, 153, 311, 416, 644
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 1 cut(s) 411
StyI CCWWGG 1 cut(s) 616
TaaI ACNGT 4 cut(s) 202, 239, 460, 490
TaiI ACGT 5 cut(s) 93, 339, 381, 456, 546
TaqI TCGA 2 cut(s) 249, 320
TasI AATT 4 cut(s) 127, 511, 586, 604
TatI WGTACW 1 cut(s) 263
TauI GCSGC 3 cut(s) 144, 152, 155
TfiI GAWTC 1 cut(s) 622
Tru1I TTAA 3 cut(s) 15, 509, 534
Tru9I TTAA 3 cut(s) 15, 509, 534
TseFI GTSAC 1 cut(s) 454
TseI GCWGC 2 cut(s) 69, 138
Tsp45I GTSAC 1 cut(s) 454
TspDTI ATGAA 3 cut(s) 248, 369, 464
TspGWI ACGGA 2 cut(s) 288, 404
Tth111I GACNNNGTC 1 cut(s) 89
Van91I CCANNNNNTGG 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 486
XapI RAATTY 1 cut(s) 511
XmnI GAANNNNTTC 1 cut(s) 239
XspI CTAG 1 cut(s) 6
ZraI GACGTC 1 cut(s) 91
ZrmI AGTACT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.