MD06G1094700.v1.1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0016328
Physical Location & Seq
Forward (+)
22706966 .. 22707625
660 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1094700.v1.1.491

Sequence Viewer

Length: 660 bp
ATGGCTTCTCCTAAAGAACAAGTCAAGCCTTTAGCCCTAGCCAACTCACACTATCTCCGCAGTGATGAAGAGGAAGTCGCCTCCTTGCACATAAAGCTCAAGCAAAGAAAATACGTGCACTGTTGCGGCTGTGTCTCTGCCGTTTTCTTAATCATAGCTGTAACAGCCATAGTCCTCGGATTCACCGTGTTTCATGTAAAGGATCCGAAGATCAAGATGAACAAGGTCACAGTCCAACGGCTGGAGTTTGCCAATGGAAACCTACGTACGGATACTAATATAACACTCCTAGCGGATGTCTCCGTCAAAAATCCTAACGTGGCATCTTTCAAGTATAGCAATGCCACCACTTTGGTTTACTACAGCGGGACAGAGGTCGGCGAAGGGAGGACTCCAGCGGGAGTGGCAAAGGCGAGGCGGACATCGAGGATGAATGTTACGGTGGATATTGTTCCCGGGAAGATCTTGGGCGTACCGGGGCTCATGAGGGAGGTAGCTTCAGGGGAACTGACCATGACGACTTATACGAGAATTCAGGGTAAGGTGAAAGTCGTTATGGTCAAGAAAAATGTAGTGGTTGAATTGAATTGTACCGTGAGGTACAATTTTTCAAGCGGGGAGATTCAAGGAAAAGATTGCAAACGGAGGGTTCGTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

220

Amino Acids

24.16

Weight (kDa)

9.83

Isoelectric Point (pI)

28.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 100 - 198 1.1e-12 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03460
malus_domestica MD06G1094700.v1.1 MD14G1114900.v1.1
prunus_persica Prupe.5G109900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0196201
rosa_laevigata RLG00000004052
rosa_multiflora Rmu_sc0007292.1_g000014
rosa_roxburghii Rroxscaffold_1G00000810 Rroxscaffold_3G00259650 Rroxscaffold_3G00259660
rosa_rugosa Rorug07G0032000
rosa_samantha Rh7BG159200 Rh7CG163200 Rh7DG158500
rosa_wichuraiana Rw7G013480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 241
AciI CCGC 7 cut(s) 58, 126, 293, 366, 398, 418, 615
AclWI GGATC 2 cut(s) 197, 210
AcsI RAATTY 1 cut(s) 531
AcuI CTGAAG 1 cut(s) 483
AfaI GTAC 4 cut(s) 268, 474, 592, 602
AfiI CCNNNNNNNGG 2 cut(s) 241, 268
AgsI TTSAA 5 cut(s) 331, 581, 586, 612, 626
AluBI AGCT 3 cut(s) 97, 158, 497
AluI AGCT 3 cut(s) 97, 158, 497
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 2 cut(s) 139, 304
Alw44I GTGCAC 1 cut(s) 116
AlwI GGATC 2 cut(s) 197, 210
Ama87I CYCGRG 1 cut(s) 455
ApaLI GTGCAC 1 cut(s) 116
ApoI RAATTY 1 cut(s) 531
AsuC2I CCSGG 3 cut(s) 456, 457, 477
AsuHPI GGTGA 2 cut(s) 175, 556
AvaI CYCGRG 1 cut(s) 455
BaeGI GKGCMC 1 cut(s) 120
BamHI GGATCC 1 cut(s) 202
BanII GRGCYC 1 cut(s) 483
Bbv12I GWGCWC 1 cut(s) 120
BceAI ACGGC 2 cut(s) 125, 254
BciVI GTATCC 1 cut(s) 265
BcnI CCSGG 3 cut(s) 456, 457, 477
BcoDI GTCTC 2 cut(s) 139, 304
BfaI CTAG 2 cut(s) 38, 290
BfmI CTRYAG 1 cut(s) 361
BfuI GTATCC 1 cut(s) 265
BglII AGATCT 1 cut(s) 462
BisI GCNGC 1 cut(s) 127
BlsI GCNGC 1 cut(s) 128
Bme1390I CCNGG 3 cut(s) 456, 457, 477
BmeT110I CYCGRG 1 cut(s) 455
BmiI GGNNCC 1 cut(s) 204
BmrFI CCNGG 3 cut(s) 456, 457, 477
BmsI GCATC 1 cut(s) 332
BoxI GACNNNNGTC 1 cut(s) 374
BpmI CTGGAG 2 cut(s) 263, 378
BpuEI CTTGAG 1 cut(s) 83
BpuMI CCSGG 3 cut(s) 456, 457, 477
BsaAI YACGTR 2 cut(s) 115, 266
BsaJI CCNNGG 3 cut(s) 175, 455, 476
BsaXI ACNNNNNCTCC 3 cut(s) 39, 69, 637
Bsc4I CCNNNNNNNGG 2 cut(s) 241, 268
Bse3DI GCAATG 1 cut(s) 346
BseDI CCNNGG 3 cut(s) 175, 455, 476
BseGI GGATG 2 cut(s) 301, 435
BseLI CCNNNNNNNGG 2 cut(s) 241, 268
BseMI GCAATG 1 cut(s) 346
BseSI GKGCMC 1 cut(s) 120
BsiHKAI GWGCWC 1 cut(s) 120
BsiHKCI CYCGRG 1 cut(s) 455
BsiSI CCGG 2 cut(s) 456, 476
BsiWI CGTACG 1 cut(s) 266
BslFI GGGAC 1 cut(s) 382
BslI CCNNNNNNNGG 2 cut(s) 241, 268
BsmAI GTCTC 2 cut(s) 139, 304
BsmFI GGGAC 1 cut(s) 382
BsoBI CYCGRG 1 cut(s) 455
Bsp1286I GDGCHC 2 cut(s) 120, 483
Bsp143I GATC 3 cut(s) 202, 210, 462
BspACI CCGC 7 cut(s) 58, 126, 293, 366, 398, 418, 615
BspHI TCATGA 1 cut(s) 483
BspLI GGNNCC 1 cut(s) 204
BspPI GGATC 2 cut(s) 197, 210
BsrDI GCAATG 1 cut(s) 346
BssECI CCNNGG 3 cut(s) 175, 455, 476
BssMI GATC 3 cut(s) 202, 210, 462
Bst4CI ACNGT 5 cut(s) 122, 187, 232, 442, 595
Bst6I CTCTTC 1 cut(s) 63
BstBAI YACGTR 2 cut(s) 115, 266
BstF5I GGATG 2 cut(s) 301, 435
BstKTI GATC 3 cut(s) 205, 213, 465
BstMAI GTCTC 2 cut(s) 139, 304
BstMBI GATC 3 cut(s) 202, 210, 462
BstMWI GCNNNNNNNGC 3 cut(s) 94, 164, 404
BstPAI GACNNNNGTC 1 cut(s) 374
BstSCI CCNGG 3 cut(s) 454, 455, 475
BstSFI CTRYAG 1 cut(s) 361
BstSLI GKGCMC 1 cut(s) 120
BstSNI TACGTA 1 cut(s) 266
BstX2I RGATCY 2 cut(s) 202, 462
BstXI CCANNNNNNTGG 1 cut(s) 352
BstYI RGATCY 2 cut(s) 202, 462
BsuI GTATCC 1 cut(s) 265
BtsCI GGATG 2 cut(s) 301, 435
BtsI GCAGTG 1 cut(s) 67
BtsIMutI CAGTG 2 cut(s) 67, 118
CciI TCATGA 1 cut(s) 483
Cfr9I CCCGGG 1 cut(s) 455
Csp6I GTAC 4 cut(s) 267, 473, 591, 601
CviAII CATG 3 cut(s) 194, 484, 514
CviQI GTAC 4 cut(s) 267, 473, 591, 601
DpnI GATC 3 cut(s) 204, 212, 464
DpnII GATC 3 cut(s) 202, 210, 462
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
EciI GGCGGA 1 cut(s) 433
Eco105I TACGTA 1 cut(s) 266
Eco24I GRGCYC 1 cut(s) 483
Eco57I CTGAAG 1 cut(s) 483
Eco88I CYCGRG 1 cut(s) 455
EcoRI GAATTC 1 cut(s) 531
EcoT38I GRGCYC 1 cut(s) 483
FaeI CATG 3 cut(s) 197, 487, 517
FaqI GGGAC 1 cut(s) 382
FatI CATG 3 cut(s) 193, 483, 513
FauI CCCGC 3 cut(s) 359, 391, 608
Fnu4HI GCNGC 1 cut(s) 127
FokI GGATG 2 cut(s) 308, 442
FriOI GRGCYC 1 cut(s) 483
Fsp4HI GCNGC 1 cut(s) 127
FspBI CTAG 2 cut(s) 38, 290
GluI GCNGC 1 cut(s) 127
GsuI CTGGAG 2 cut(s) 263, 378
HapII CCGG 2 cut(s) 456, 476
Hin1II CATG 3 cut(s) 197, 487, 517
HinfI GANTC 3 cut(s) 180, 391, 622
HpaII CCGG 2 cut(s) 456, 476
HphI GGTGA 2 cut(s) 175, 556
Hpy166II GTNNAC 2 cut(s) 118, 358
Hpy188I TCNGA 2 cut(s) 179, 207
Hpy188III TCNNGA 3 cut(s) 214, 484, 562
Hpy8I GTNNAC 2 cut(s) 118, 358
HpyAV CCTTC 1 cut(s) 377
HpyCH4III ACNGT 5 cut(s) 122, 187, 232, 442, 595
HpyCH4IV ACGT 3 cut(s) 114, 265, 318
HpyCH4V TGCA 3 cut(s) 88, 118, 639
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 164, 404
HpySE526I ACGT 3 cut(s) 114, 265, 318
Hsp92II CATG 3 cut(s) 197, 487, 517
Kzo9I GATC 3 cut(s) 202, 210, 462
LpnPI CCDG 6 cut(s) 227, 408, 469, 486, 489, 521
LweI GCATC 1 cut(s) 332
MaeI CTAG 2 cut(s) 38, 290
MaeII ACGT 3 cut(s) 114, 265, 318
MaeIII GTNAC 3 cut(s) 160, 226, 436
MalI GATC 3 cut(s) 204, 212, 464
MboI GATC 3 cut(s) 202, 210, 462
MboII GAAGA 3 cut(s) 80, 220, 472
MflI RGATCY 2 cut(s) 202, 462
MhlI GDGCHC 2 cut(s) 120, 483
MluCI AATT 4 cut(s) 531, 581, 586, 604
MlyI GAGTC 1 cut(s) 385
MmeI TCCRAC 1 cut(s) 259
MseI TTAA 1 cut(s) 149
MspA1I CMGCKG 2 cut(s) 366, 398
MspI CCGG 2 cut(s) 456, 476
MspR9I CCNGG 3 cut(s) 456, 457, 477
MwoI GCNNNNNNNGC 3 cut(s) 94, 164, 404
NciI CCSGG 3 cut(s) 456, 457, 477
NdeII GATC 3 cut(s) 202, 210, 462
NlaIII CATG 3 cut(s) 197, 487, 517
NlaIV GGNNCC 1 cut(s) 204
NmuCI GTSAC 1 cut(s) 226
PagI TCATGA 1 cut(s) 483
PcsI WCGNNNNNNNCGW 3 cut(s) 183, 524, 649
PfeI GAWTC 2 cut(s) 180, 622
Pfl23II CGTACG 1 cut(s) 266
PflMI CCANNNNNTGG 1 cut(s) 241
PkrI GCNGC 1 cut(s) 128
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
Ppu21I YACGTR 2 cut(s) 115, 266
PshAI GACNNNNGTC 1 cut(s) 374
PspLI CGTACG 1 cut(s) 266
PspN4I GGNNCC 1 cut(s) 204
PsuI RGATCY 2 cut(s) 202, 462
RsaI GTAC 4 cut(s) 268, 474, 592, 602
RsaNI GTAC 4 cut(s) 267, 473, 591, 601
SaqAI TTAA 1 cut(s) 149
SatI GCNGC 1 cut(s) 127
Sau3AI GATC 3 cut(s) 202, 210, 462
SchI GAGTC 1 cut(s) 385
ScrFI CCNGG 3 cut(s) 456, 457, 477
SduI GDGCHC 2 cut(s) 120, 483
SfaNI GCATC 1 cut(s) 332
SfcI CTRYAG 1 cut(s) 361
SmaI CCCGGG 1 cut(s) 457
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
SnaBI TACGTA 1 cut(s) 266
Sse9I AATT 4 cut(s) 531, 581, 586, 604
SsiI CCGC 7 cut(s) 58, 126, 293, 366, 398, 418, 615
SspMI CTAG 2 cut(s) 38, 290
StyD4I CCNGG 3 cut(s) 454, 455, 475
TaaI ACNGT 5 cut(s) 122, 187, 232, 442, 595
TaiI ACGT 3 cut(s) 117, 268, 321
TaqI TCGA 1 cut(s) 425
TasI AATT 4 cut(s) 531, 581, 586, 604
TauI GCSGC 1 cut(s) 129
TfiI GAWTC 2 cut(s) 180, 622
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TscAI CASTG 2 cut(s) 67, 125
TseFI GTSAC 1 cut(s) 226
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 4 cut(s) 81, 182, 233, 446
TspGWI ACGGA 3 cut(s) 284, 292, 658
TspMI CCCGGG 1 cut(s) 455
TspRI CASTG 2 cut(s) 67, 125
Van91I CCANNNNNTGG 1 cut(s) 241
VneI GTGCAC 1 cut(s) 116
XapI RAATTY 1 cut(s) 531
XmaI CCCGGG 1 cut(s) 455
XspI CTAG 2 cut(s) 38, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.