Prupe.5G109900_v2.0.a1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0016328
Physical Location & Seq
Forward (+)
11464413 .. 11465649
1237 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G109900.1

Sequence Viewer

Length: 660 bp
ATGGCTGCCAAAGAACAAGGCAAGCCCCTAGCCCCAGCCAACTCATACCATCTCCGCAGTGATGAAGAAGAAGTTTTCGTCTCCTCACACATAAAGCTCTGCCAAAGAAAATATGTAATGTGCTGTGGCTGTGTCTCGGCTCTCTTCTTAATCATAGCCGTAACAGCCATAGTTCTCGGGTTCACGGTGTTTCACGTAAAGGGCCCGAGGATCAAGATGAATGATGTCACAATCCAACAACTGGAGGTTGCCAACGGAGCCCTACGCTCGGATACTAATGTGACACTCCTAGCTGATGTCTCGATCAAGAACCCTAACGTGGCATCTTTCAAGTATGGGAACACAACCACCAGGGTTTACTACAGCGGGACGGAGGTGGGCCAGGGGAGGACTCCAGCAGGGGTGGCAAAGGCGAGGAGGACGATGAGGATGAACGTGACGGTGGATATTGTTCCTGGGGAGATCTCGGCGGTGCCGGGGTTCATAAAGGAGGTGGCATCAGGGAAGTTGACGGTGAGCACTTATACAAGGATTGAAGGTAAGGTGAAAATTCTTATGGTCAATAAAAATGTGGTGGTTGAATTGAATTGTAGCATGACGTACAATTTTGCAAGCAAGGGGATTGAAGGAGAGGACTGCAAGCGAAGGGTTAGTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

220

Amino Acids

23.87

Weight (kDa)

9.41

Isoelectric Point (pI)

27.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03460
malus_domestica MD06G1094700.v1.1 MD14G1114900.v1.1
prunus_persica Prupe.5G109900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0196201
rosa_laevigata RLG00000004052
rosa_multiflora Rmu_sc0007292.1_g000014
rosa_roxburghii Rroxscaffold_1G00000810 Rroxscaffold_3G00259650 Rroxscaffold_3G00259660
rosa_rugosa Rorug07G0032000
rosa_samantha Rh7BG159200 Rh7CG163200 Rh7DG158500
rosa_wichuraiana Rw7G013480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 472
AccB7I CCANNNNNTGG 1 cut(s) 241
AciI CCGC 3 cut(s) 55, 366, 470
AclWI GGATC 1 cut(s) 218
AcsI RAATTY 1 cut(s) 549
AfaI GTAC 1 cut(s) 602
AfiI CCNNNNNNNGG 3 cut(s) 241, 268, 319
AgsI TTSAA 5 cut(s) 331, 536, 581, 586, 626
AjnI CCWGG 3 cut(s) 350, 381, 454
AluBI AGCT 2 cut(s) 97, 293
AluI AGCT 2 cut(s) 97, 293
Alw21I GWGCWC 1 cut(s) 521
Alw26I GTCTC 3 cut(s) 85, 139, 304
AlwI GGATC 1 cut(s) 218
Ama87I CYCGRG 2 cut(s) 176, 205
AoxI GGCC 2 cut(s) 202, 379
ApaI GGGCCC 1 cut(s) 206
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 549
ArsI GACNNNNNNTTYG 1 cut(s) 637
AspS9I GGNCC 3 cut(s) 202, 203, 379
AsuC2I CCSGG 1 cut(s) 477
AsuHPI GGTGA 2 cut(s) 526, 556
AvaI CYCGRG 2 cut(s) 176, 205
BaeGI GKGCMC 1 cut(s) 206
BaeI ACNNNNGTAYC 2 cut(s) 264, 297
BanI GGYRCC 1 cut(s) 472
BanII GRGCYC 2 cut(s) 206, 262
Bbv12I GWGCWC 1 cut(s) 521
BccI CCATC 1 cut(s) 57
BceAI ACGGC 1 cut(s) 143
BciT130I CCWGG 3 cut(s) 352, 383, 456
BciVI GTATCC 1 cut(s) 265
BcnI CCSGG 1 cut(s) 477
BcoDI GTCTC 3 cut(s) 85, 139, 304
BfaI CTAG 2 cut(s) 29, 290
BfmI CTRYAG 1 cut(s) 361
BfuI GTATCC 1 cut(s) 265
BglII AGATCT 1 cut(s) 462
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 4 cut(s) 352, 383, 456, 477
BmeT110I CYCGRG 2 cut(s) 176, 205
BmgT120I GGNCC 3 cut(s) 202, 203, 379
BmiI GGNNCC 3 cut(s) 204, 259, 474
BmrFI CCNGG 4 cut(s) 352, 383, 456, 477
BmsI GCATC 2 cut(s) 332, 506
BpmI CTGGAG 2 cut(s) 263, 378
BpuMI CCSGG 1 cut(s) 477
BsaAI YACGTR 1 cut(s) 196
BsaJI CCNNGG 5 cut(s) 206, 351, 382, 455, 476
Bsc4I CCNNNNNNNGG 3 cut(s) 241, 268, 319
Bse1I ACTGG 1 cut(s) 246
BseBI CCWGG 3 cut(s) 352, 383, 456
BseDI CCNNGG 5 cut(s) 206, 351, 382, 455, 476
BseGI GGATG 1 cut(s) 435
BseLI CCNNNNNNNGG 3 cut(s) 241, 268, 319
BseNI ACTGG 1 cut(s) 246
BseRI GAGGAG 2 cut(s) 73, 430
BseSI GKGCMC 1 cut(s) 206
BseYI CCCAGC 1 cut(s) 34
BshFI GGCC 2 cut(s) 204, 381
BshNI GGYRCC 1 cut(s) 472
BsiHKAI GWGCWC 1 cut(s) 521
BsiHKCI CYCGRG 2 cut(s) 176, 205
BsiSI CCGG 1 cut(s) 476
BslFI GGGAC 1 cut(s) 382
BslI CCNNNNNNNGG 3 cut(s) 241, 268, 319
BsmAI GTCTC 3 cut(s) 85, 139, 304
BsmBI CGTCTC 1 cut(s) 85
BsmFI GGGAC 1 cut(s) 382
BsnI GGCC 2 cut(s) 204, 381
BsoBI CYCGRG 2 cut(s) 176, 205
Bsp120I GGGCCC 1 cut(s) 202
Bsp1286I GDGCHC 3 cut(s) 206, 262, 521
Bsp143I GATC 3 cut(s) 210, 303, 462
BspACI CCGC 3 cut(s) 55, 366, 470
BspANI GGCC 2 cut(s) 204, 381
BspLI GGNNCC 3 cut(s) 204, 259, 474
BspPI GGATC 1 cut(s) 218
BspT107I GGYRCC 1 cut(s) 472
BsrI ACTGG 1 cut(s) 246
BssECI CCNNGG 5 cut(s) 206, 351, 382, 455, 476
BssMI GATC 3 cut(s) 210, 303, 462
Bst2UI CCWGG 3 cut(s) 352, 383, 456
Bst4CI ACNGT 3 cut(s) 187, 442, 514
Bst6I CTCTTC 1 cut(s) 149
BstBAI YACGTR 1 cut(s) 196
BstC8I GCNNGC 3 cut(s) 23, 613, 641
BstF5I GGATG 1 cut(s) 435
BstKTI GATC 3 cut(s) 213, 306, 465
BstMAI GTCTC 3 cut(s) 85, 139, 304
BstMBI GATC 3 cut(s) 210, 303, 462
BstMWI GCNNNNNNNGC 3 cut(s) 164, 257, 404
BstNI CCWGG 3 cut(s) 352, 383, 456
BstSCI CCNGG 4 cut(s) 350, 381, 454, 475
BstSFI CTRYAG 1 cut(s) 361
BstSLI GKGCMC 1 cut(s) 206
BstX2I RGATCY 1 cut(s) 462
BstYI RGATCY 1 cut(s) 462
BsuI GTATCC 1 cut(s) 265
BsuRI GGCC 2 cut(s) 204, 381
BtsCI GGATG 1 cut(s) 435
BtsI GCAGTG 1 cut(s) 64
BtsIMutI CAGTG 1 cut(s) 64
Cac8I GCNNGC 3 cut(s) 23, 613, 641
Cfr13I GGNCC 3 cut(s) 202, 203, 379
Csp6I GTAC 1 cut(s) 601
CviAII CATG 1 cut(s) 595
CviQI GTAC 1 cut(s) 601
DpnI GATC 3 cut(s) 212, 305, 464
DpnII GATC 3 cut(s) 210, 303, 462
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
Eco24I GRGCYC 2 cut(s) 206, 262
Eco88I CYCGRG 2 cut(s) 176, 205
EcoO109I RGGNCCY 1 cut(s) 202
EcoRII CCWGG 3 cut(s) 350, 381, 454
EcoT38I GRGCYC 2 cut(s) 206, 262
Esp3I CGTCTC 1 cut(s) 85
FaeI CATG 1 cut(s) 598
FaqI GGGAC 1 cut(s) 382
FatI CATG 1 cut(s) 594
FauI CCCGC 1 cut(s) 359
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 442
FriOI GRGCYC 2 cut(s) 206, 262
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 2 cut(s) 29, 290
GluI GCNGC 1 cut(s) 6
GsaI CCCAGC 1 cut(s) 38
GsuI CTGGAG 2 cut(s) 263, 378
HaeIII GGCC 2 cut(s) 204, 381
HapII CCGG 1 cut(s) 476
Hin1II CATG 1 cut(s) 598
HincII GTYRAC 1 cut(s) 510
HindII GTYRAC 1 cut(s) 510
HinfI GANTC 1 cut(s) 391
HpaII CCGG 1 cut(s) 476
HphI GGTGA 2 cut(s) 526, 556
Hpy166II GTNNAC 3 cut(s) 183, 358, 510
Hpy188I TCNGA 1 cut(s) 271
Hpy188III TCNNGA 3 cut(s) 214, 301, 307
Hpy8I GTNNAC 3 cut(s) 183, 358, 510
HpyAV CCTTC 3 cut(s) 530, 620, 639
HpyCH4III ACNGT 3 cut(s) 187, 442, 514
HpyCH4IV ACGT 4 cut(s) 195, 318, 435, 599
HpyCH4V TGCA 2 cut(s) 611, 639
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 257, 404
HpySE526I ACGT 4 cut(s) 195, 318, 435, 599
Hsp92II CATG 1 cut(s) 598
Kzo9I GATC 3 cut(s) 210, 303, 462
LmnI GCTCC 1 cut(s) 257
LweI GCATC 2 cut(s) 332, 506
MaeI CTAG 2 cut(s) 29, 290
MaeII ACGT 4 cut(s) 195, 318, 435, 599
MaeIII GTNAC 4 cut(s) 160, 226, 280, 436
MalI GATC 3 cut(s) 212, 305, 464
MboI GATC 3 cut(s) 210, 303, 462
MboII GAAGA 3 cut(s) 77, 80, 136
MflI RGATCY 1 cut(s) 462
MhlI GDGCHC 3 cut(s) 206, 262, 521
MluCI AATT 4 cut(s) 549, 581, 586, 604
MlyI GAGTC 1 cut(s) 385
MmeI TCCRAC 1 cut(s) 259
MseI TTAA 1 cut(s) 149
MspA1I CMGCKG 1 cut(s) 366
MspI CCGG 1 cut(s) 476
MspR9I CCNGG 4 cut(s) 352, 383, 456, 477
MvaI CCWGG 3 cut(s) 352, 383, 456
MwoI GCNNNNNNNGC 3 cut(s) 164, 257, 404
NciI CCSGG 1 cut(s) 477
NdeII GATC 3 cut(s) 210, 303, 462
NlaIII CATG 1 cut(s) 598
NlaIV GGNNCC 3 cut(s) 204, 259, 474
NmeAIII GCCGAG 2 cut(s) 116, 446
NmuCI GTSAC 3 cut(s) 226, 280, 436
PflMI CCANNNNNTGG 1 cut(s) 241
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
Ppu21I YACGTR 1 cut(s) 196
Psp6I CCWGG 3 cut(s) 350, 381, 454
PspFI CCCAGC 1 cut(s) 34
PspGI CCWGG 3 cut(s) 350, 381, 454
PspN4I GGNNCC 3 cut(s) 204, 259, 474
PspOMI GGGCCC 1 cut(s) 202
PspPI GGNCC 3 cut(s) 202, 203, 379
PsuI RGATCY 1 cut(s) 462
RsaI GTAC 1 cut(s) 602
RsaNI GTAC 1 cut(s) 601
SaqAI TTAA 1 cut(s) 149
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 3 cut(s) 210, 303, 462
Sau96I GGNCC 3 cut(s) 202, 203, 379
SchI GAGTC 1 cut(s) 385
ScrFI CCNGG 4 cut(s) 352, 383, 456, 477
SduI GDGCHC 3 cut(s) 206, 262, 521
SfaNI GCATC 2 cut(s) 332, 506
SfcI CTRYAG 1 cut(s) 361
Sse9I AATT 4 cut(s) 549, 581, 586, 604
SsiI CCGC 3 cut(s) 55, 366, 470
SspMI CTAG 2 cut(s) 29, 290
StyD4I CCNGG 4 cut(s) 350, 381, 454, 475
TaaI ACNGT 3 cut(s) 187, 442, 514
TaiI ACGT 4 cut(s) 198, 321, 438, 602
TaqI TCGA 1 cut(s) 302
TasI AATT 4 cut(s) 549, 581, 586, 604
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 3 cut(s) 226, 280, 436
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 3 cut(s) 226, 280, 436
TspDTI ATGAA 4 cut(s) 78, 233, 446, 472
TspGWI ACGGA 2 cut(s) 270, 386
TspRI CASTG 1 cut(s) 64
Van91I CCANNNNNTGG 1 cut(s) 241
XapI RAATTY 1 cut(s) 549
XspI CTAG 2 cut(s) 29, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.