Rmu_sc0007292.1_g000014

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007292.1
OG0016328
Physical Location & Seq
Reverse (-)
36132 .. 39327
3196 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007292.1_g000014.1.cds

Sequence Viewer

Length: 1332 bp
atggctagtccgtttaacccgagagagcaagtaaagcccttagccccatcatcaagatacagcgttcgcagccatgacttggaagacgacgtcccttccctccacataactaagttcagccacagaaattactactgctgcggcctcgccgccgccatgttcttgatcctcgccgtcatcgccatcgtcctcggcttcaccgtcttccacgtgaagggcccgaggatcacgatgaacggcgtcacgatcgaacagctgacgagtactgctaacggaagtttacagaccgattccaatatcactcttctggcggatgtctcgatcaagaaccctaacgtggcgtcgttcaagtatgcaaacacgaccactttggtttacttctacgggaccgaggtcggcgaggggaggagcccggcgggggtggcgaaggcgaggaggacgatgagaatgaacgtgacggtggatattgttccggcgaagatcctggccgtgccggagttttccaaagagtttgctgcaagggtgttaactttgactagctttacgagagttcatggcaaggtgaaagttgttatggtgaagaggaatgttgaggttgagctgaattgtaccatgacatacaattttacaagccaagggattcagggagataaatgcaaacagcgacagcagcttcagttagttcggatcagtgcggttaatgtgaagaggtcctgttcggggcccaacaacaacaacaatcacaccggcaagctctccgggtccagcgagagcagtcctacaaatacccggaatagctccaaaacgggtcatacgagatccaattccggctctggccatcaaaccgaccttttgggctccgggacgggcaattacggccacgggagcataatgtggggcggcacggcagccaagagtgtcggtgtggcggaggccgtgagctacaaaacaagcggcggcggagagttgaagagaggaatgagtagtgtggatccagaagaggctgcggccttgacaggtctacggcggctgggggaggtggtgagggagtgtgaggaggctgtacatggagaagaaagagagaagatggtcgtgaaggtaaactgtgactgttttcttcatgcaaatgtgcaatattggatacttgcagtgaaacgcatagcgcaaagccttagcgtacagaagacatctaggactaagcctccaatagcctgcatgattgacaagaaacgcgttccgtggttaatttatgtgattccatcggccaagatcaacactgaaattacagctagaagagctgatgacagtattccgatccttgaagaaagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

443

Amino Acids

48.28

Weight (kDa)

9.55

Isoelectric Point (pI)

46.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03460
malus_domestica MD06G1094700.v1.1 MD14G1114900.v1.1
prunus_persica Prupe.5G109900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0196201
rosa_laevigata RLG00000004052
rosa_multiflora Rmu_sc0007292.1_g000014
rosa_roxburghii Rroxscaffold_1G00000810 Rroxscaffold_3G00259650 Rroxscaffold_3G00259660
rosa_rugosa Rorug07G0032000
rosa_samantha Rh7BG159200 Rh7CG163200 Rh7DG158500
rosa_wichuraiana Rw7G013480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 93
AccB7I CCANNNNNTGG 1 cut(s) 79
AccI GTMKAC 1 cut(s) 1021
AccII CGCG 1 cut(s) 1233
AclWI GGATC 8 cut(s) 160, 233, 475, 695, 813, 986, 999, 1309
AcoI YGGCCR 4 cut(s) 486, 835, 877, 1263
AcuI CTGAAG 1 cut(s) 659
AcvI CACGTG 1 cut(s) 211
AcyI GRCGYC 3 cut(s) 90, 240, 341
AfaI GTAC 4 cut(s) 265, 610, 1065, 1179
AfiI CCNNNNNNNGG 5 cut(s) 79, 214, 337, 418, 720
AflIII ACRYGT 1 cut(s) 1231
AgsI TTSAA 3 cut(s) 349, 970, 1322
AjnI CCWGG 1 cut(s) 483
AluBI AGCT 9 cut(s) 256, 540, 601, 673, 754, 798, 942, 1289, 1298
AluI AGCT 9 cut(s) 256, 540, 601, 673, 754, 798, 942, 1289, 1298
Alw26I GTCTC 1 cut(s) 322
AlwI GGATC 8 cut(s) 160, 233, 475, 695, 813, 986, 999, 1309
Ama87I CYCGRG 2 cut(s) 19, 220
AoxI GGCC 9 cut(s) 142, 217, 486, 722, 835, 877, 933, 1008, 1263
ApaI GGGCCC 2 cut(s) 221, 726
ApeKI GCWGC 6 cut(s) 69, 138, 515, 670, 908, 1004
AspLEI GCGC 1 cut(s) 1165
AspS9I GGNCC 7 cut(s) 217, 218, 387, 711, 722, 723, 762
AsuC2I CCSGG 4 cut(s) 413, 760, 790, 862
AsuHPI GGTGA 4 cut(s) 190, 574, 589, 1054
AvaI CYCGRG 2 cut(s) 19, 220
AvaII GGWCC 3 cut(s) 387, 711, 762
BaeGI GKGCMC 2 cut(s) 221, 726
BalI TGGCCA 1 cut(s) 837
BamHI GGATCC 1 cut(s) 991
BanII GRGCYC 4 cut(s) 221, 413, 726, 860
BbrPI CACGTG 1 cut(s) 211
BbsI GAAGAC 3 cut(s) 90, 196, 1190
BbvI GCAGC 6 cut(s) 81, 125, 502, 682, 920, 991
BccI CCATC 5 cut(s) 55, 191, 846, 1081, 1267
BceAI ACGGC 7 cut(s) 158, 253, 473, 892, 920, 921, 1040
BciT130I CCWGG 1 cut(s) 485
BciVI GTATCC 1 cut(s) 1134
BcnI CCSGG 4 cut(s) 413, 760, 790, 862
BcoDI GTCTC 1 cut(s) 322
BfaI CTAG 4 cut(s) 6, 537, 1191, 1290
BfuI GTATCC 1 cut(s) 1134
BmcAI AGTACT 1 cut(s) 265
Bme1390I CCNGG 5 cut(s) 413, 485, 760, 790, 862
Bme18I GGWCC 3 cut(s) 387, 711, 762
BmeT110I CYCGRG 2 cut(s) 19, 220
BmgT120I GGNCC 7 cut(s) 217, 218, 387, 711, 722, 723, 762
BmiI GGNNCC 8 cut(s) 219, 388, 410, 723, 724, 763, 859, 993
BmrFI CCNGG 5 cut(s) 413, 485, 760, 790, 862
BoxI GACNNNNGTC 1 cut(s) 392
BpiI GAAGAC 3 cut(s) 90, 196, 1190
Bpu10I CCTNAGC 2 cut(s) 40, 1172
BpuMI CCSGG 4 cut(s) 413, 760, 790, 862
BsaAI YACGTR 1 cut(s) 211
BsaHI GRCGYC 3 cut(s) 90, 240, 341
BsaJI CCNNGG 6 cut(s) 190, 221, 390, 634, 880, 1238
BsaXI ACNNNNNCTCC 2 cut(s) 1186, 1216
Bsc4I CCNNNNNNNGG 5 cut(s) 79, 214, 337, 418, 720
Bse118I RCCGGY 1 cut(s) 746
BseBI CCWGG 1 cut(s) 485
BseDI CCNNGG 6 cut(s) 190, 221, 390, 634, 880, 1238
BseGI GGATG 1 cut(s) 319
BseLI CCNNNNNNNGG 5 cut(s) 79, 214, 337, 418, 720
BseRI GAGGAG 3 cut(s) 421, 448, 1070
BseSI GKGCMC 2 cut(s) 221, 726
BseXI GCAGC 6 cut(s) 81, 125, 502, 682, 920, 991
BseYI CCCAGC 1 cut(s) 1030
Bsh1236I CGCG 1 cut(s) 1233
Bsh1285I CGRYCG 1 cut(s) 249
BshFI GGCC 9 cut(s) 144, 219, 488, 724, 837, 879, 935, 1010, 1265
BsiEI CGRYCG 1 cut(s) 249
BsiHKCI CYCGRG 2 cut(s) 19, 220
BsiSI CCGG 8 cut(s) 413, 473, 494, 747, 759, 790, 828, 861
BslFI GGGAC 3 cut(s) 77, 400, 877
BslI CCNNNNNNNGG 5 cut(s) 79, 214, 337, 418, 720
BsmAI GTCTC 1 cut(s) 322
BsmFI GGGAC 3 cut(s) 77, 400, 877
BsnI GGCC 9 cut(s) 144, 219, 488, 724, 837, 879, 935, 1010, 1265
BsoBI CYCGRG 2 cut(s) 19, 220
Bsp120I GGGCCC 2 cut(s) 217, 722
Bsp1286I GDGCHC 4 cut(s) 221, 413, 726, 860
Bsp1407I TGTACA 1 cut(s) 1063
BspANI GGCC 9 cut(s) 144, 219, 488, 724, 837, 879, 935, 1010, 1265
BspFNI CGCG 1 cut(s) 1233
BspLI GGNNCC 8 cut(s) 219, 388, 410, 723, 724, 763, 859, 993
BspPI GGATC 8 cut(s) 160, 233, 475, 695, 813, 986, 999, 1309
BspQI GCTCTTC 1 cut(s) 1288
BsrFI RCCGGY 1 cut(s) 746
BsrGI TGTACA 1 cut(s) 1063
BssAI RCCGGY 1 cut(s) 746
BssECI CCNNGG 6 cut(s) 190, 221, 390, 634, 880, 1238
BssNI GRCGYC 3 cut(s) 90, 240, 341
BssT1I CCWWGG 1 cut(s) 634
Bst2UI CCWGG 1 cut(s) 485
Bst4CI ACNGT 5 cut(s) 202, 460, 1106, 1112, 1307
Bst6I CTCTTC 6 cut(s) 309, 575, 701, 965, 993, 1288
BstACI GRCGYC 3 cut(s) 90, 240, 341
BstAUI TGTACA 1 cut(s) 1063
BstBAI YACGTR 1 cut(s) 211
BstC8I GCNNGC 2 cut(s) 752, 1213
BstDEI CTNAG 4 cut(s) 40, 111, 1172, 1197
BstDSI CCRYGG 2 cut(s) 880, 1238
BstF5I GGATG 1 cut(s) 319
BstFNI CGCG 1 cut(s) 1233
BstHHI GCGC 1 cut(s) 1165
BstMAI GTCTC 1 cut(s) 322
BstMCI CGRYCG 1 cut(s) 249
BstMWI GCNNNNNNNGC 8 cut(s) 34, 69, 179, 422, 670, 876, 885, 1295
BstNI CCWGG 1 cut(s) 485
BstPAI GACNNNNGTC 1 cut(s) 392
BstSCI CCNGG 5 cut(s) 411, 483, 758, 788, 860
BstSLI GKGCMC 2 cut(s) 221, 726
BstUI CGCG 1 cut(s) 1233
BstV1I GCAGC 6 cut(s) 81, 125, 502, 682, 920, 991
BstV2I GAAGAC 3 cut(s) 90, 196, 1190
BstX2I RGATCY 3 cut(s) 480, 818, 991
BstYI RGATCY 3 cut(s) 480, 818, 991
BsuI GTATCC 1 cut(s) 1134
BsuRI GGCC 9 cut(s) 144, 219, 488, 724, 837, 879, 935, 1010, 1265
BtgI CCRYGG 2 cut(s) 880, 1238
BtgZI GCGATG 1 cut(s) 163
BtsCI GGATG 1 cut(s) 319
BtsI GCAGTG 1 cut(s) 1155
BtsIMutI CAGTG 3 cut(s) 697, 1155, 1275
Cac8I GCNNGC 2 cut(s) 752, 1213
CfoI GCGC 1 cut(s) 1165
Cfr10I RCCGGY 1 cut(s) 746
Cfr13I GGNCC 7 cut(s) 217, 218, 387, 711, 722, 723, 762
CseI GACGC 2 cut(s) 229, 330
Csp6I GTAC 4 cut(s) 264, 609, 1064, 1178
CviAII CATG 7 cut(s) 74, 157, 554, 613, 1067, 1121, 1216
CviQI GTAC 4 cut(s) 264, 609, 1064, 1178
DdeI CTNAG 4 cut(s) 40, 111, 1172, 1197
EaeI YGGCCR 4 cut(s) 486, 835, 877, 1263
Eam1104I CTCTTC 6 cut(s) 309, 575, 701, 965, 993, 1288
EarI CTCTTC 6 cut(s) 309, 575, 701, 965, 993, 1288
EciI GGCGGA 3 cut(s) 326, 944, 975
Eco130I CCWWGG 1 cut(s) 634
Eco24I GRGCYC 4 cut(s) 221, 413, 726, 860
Eco47I GGWCC 3 cut(s) 387, 711, 762
Eco57I CTGAAG 1 cut(s) 659
Eco72I CACGTG 1 cut(s) 211
Eco88I CYCGRG 2 cut(s) 19, 220
EcoO109I RGGNCCY 3 cut(s) 217, 711, 722
EcoRII CCWGG 1 cut(s) 483
EcoT14I CCWWGG 1 cut(s) 634
EcoT38I GRGCYC 4 cut(s) 221, 413, 726, 860
ErhI CCWWGG 1 cut(s) 634
FaeI CATG 7 cut(s) 77, 160, 557, 616, 1070, 1124, 1219
FaqI GGGAC 3 cut(s) 77, 400, 877
FatI CATG 7 cut(s) 73, 156, 553, 612, 1066, 1120, 1215
FauI CCCGC 1 cut(s) 409
FblI GTMKAC 1 cut(s) 1021
FokI GGATG 1 cut(s) 326
FriOI GRGCYC 4 cut(s) 221, 413, 726, 860
FspBI CTAG 4 cut(s) 6, 537, 1191, 1290
GlaI GCGC 1 cut(s) 1164
GsaI CCCAGC 1 cut(s) 1034
HaeIII GGCC 9 cut(s) 144, 219, 488, 724, 837, 879, 935, 1010, 1265
HapII CCGG 8 cut(s) 413, 473, 494, 747, 759, 790, 828, 861
HgaI GACGC 2 cut(s) 229, 330
HhaI GCGC 1 cut(s) 1165
Hin1I GRCGYC 3 cut(s) 90, 240, 341
Hin1II CATG 7 cut(s) 77, 160, 557, 616, 1070, 1124, 1219
Hin6I GCGC 1 cut(s) 1163
HinP1I GCGC 1 cut(s) 1163
HincII GTYRAC 1 cut(s) 528
HindII GTYRAC 1 cut(s) 528
HinfI GANTC 3 cut(s) 290, 640, 1255
HpaI GTTAAC 1 cut(s) 528
HpaII CCGG 8 cut(s) 413, 473, 494, 747, 759, 790, 828, 861
HphI GGTGA 4 cut(s) 190, 574, 589, 1054
Hpy166II GTNNAC 5 cut(s) 281, 376, 528, 1022, 1102
Hpy188I TCNGA 2 cut(s) 687, 1314
Hpy188III TCNNGA 8 cut(s) 54, 163, 229, 244, 319, 325, 995, 1093
Hpy8I GTNNAC 5 cut(s) 281, 376, 528, 1022, 1102
Hpy99I CGWCG 2 cut(s) 92, 346
HpyAV CCTTC 4 cut(s) 105, 208, 421, 1090
HpyCH4III ACNGT 5 cut(s) 202, 460, 1106, 1112, 1307
HpyCH4IV ACGT 4 cut(s) 90, 210, 336, 453
HpyCH4V TGCA 7 cut(s) 356, 518, 657, 1124, 1132, 1148, 1215
HpyF10VI GCNNNNNNNGC 8 cut(s) 34, 69, 179, 422, 670, 876, 885, 1295
HpyF3I CTNAG 4 cut(s) 40, 111, 1172, 1197
HpySE526I ACGT 4 cut(s) 90, 210, 336, 453
Hsp92I GRCGYC 3 cut(s) 90, 240, 341
Hsp92II CATG 7 cut(s) 77, 160, 557, 616, 1070, 1124, 1219
HspAI GCGC 1 cut(s) 1163
KspAI GTTAAC 1 cut(s) 528
LguI GCTCTTC 1 cut(s) 1288
LmnI GCTCC 4 cut(s) 408, 803, 863, 885
Lsp1109I GCAGC 6 cut(s) 81, 125, 502, 682, 920, 991
MaeI CTAG 4 cut(s) 6, 537, 1191, 1290
MaeII ACGT 4 cut(s) 90, 210, 336, 453
MaeIII GTNAC 3 cut(s) 241, 454, 1106
MflI RGATCY 3 cut(s) 480, 818, 991
MhlI GDGCHC 4 cut(s) 221, 413, 726, 860
MlsI TGGCCA 1 cut(s) 837
MluCI AATT 7 cut(s) 127, 604, 622, 823, 871, 1245, 1281
MluI ACGCGT 1 cut(s) 1231
MluNI TGGCCA 1 cut(s) 837
Mox20I TGGCCA 1 cut(s) 837
MscI TGGCCA 1 cut(s) 837
MseI TTAA 4 cut(s) 15, 527, 699, 1244
MslI CAYNNNNRTG 1 cut(s) 1125
Msp20I TGGCCA 1 cut(s) 837
MspA1I CMGCKG 1 cut(s) 256
MspI CCGG 8 cut(s) 413, 473, 494, 747, 759, 790, 828, 861
MspR9I CCNGG 5 cut(s) 413, 485, 760, 790, 862
MvaI CCWGG 1 cut(s) 485
MvnI CGCG 1 cut(s) 1233
MwoI GCNNNNNNNGC 8 cut(s) 34, 69, 179, 422, 670, 876, 885, 1295
NciI CCSGG 4 cut(s) 413, 760, 790, 862
NlaIII CATG 7 cut(s) 77, 160, 557, 616, 1070, 1124, 1219
NlaIV GGNNCC 8 cut(s) 219, 388, 410, 723, 724, 763, 859, 993
NmeAIII GCCGAG 1 cut(s) 171
NmuCI GTSAC 3 cut(s) 241, 454, 1106
PciSI GCTCTTC 1 cut(s) 1288
PcsI WCGNNNNNNNCGW 2 cut(s) 198, 812
PfeI GAWTC 3 cut(s) 290, 640, 1255
PflFI GACNNNGTC 1 cut(s) 89
PflMI CCANNNNNTGG 1 cut(s) 79
PfoI TCCNGGA 1 cut(s) 860
Ple19I CGATCG 1 cut(s) 249
PmaCI CACGTG 1 cut(s) 211
PmlI CACGTG 1 cut(s) 211
Ppu21I YACGTR 1 cut(s) 211
PpuMI RGGWCCY 1 cut(s) 711
PshAI GACNNNNGTC 1 cut(s) 392
Psp5II RGGWCCY 1 cut(s) 711
Psp6I CCWGG 1 cut(s) 483
PspCI CACGTG 1 cut(s) 211
PspFI CCCAGC 1 cut(s) 1030
PspGI CCWGG 1 cut(s) 483
PspN4I GGNNCC 8 cut(s) 219, 388, 410, 723, 724, 763, 859, 993
PspOMI GGGCCC 2 cut(s) 217, 722
PspPI GGNCC 7 cut(s) 217, 218, 387, 711, 722, 723, 762
PspPPI RGGWCCY 1 cut(s) 711
PsuI RGATCY 3 cut(s) 480, 818, 991
PsyI GACNNNGTC 1 cut(s) 89
PvuI CGATCG 1 cut(s) 249
PvuII CAGCTG 1 cut(s) 256
RsaI GTAC 4 cut(s) 265, 610, 1065, 1179
RsaNI GTAC 4 cut(s) 264, 609, 1064, 1178
RseI CAYNNNNRTG 1 cut(s) 1125
SapI GCTCTTC 1 cut(s) 1288
SaqAI TTAA 4 cut(s) 15, 527, 699, 1244
Sau96I GGNCC 7 cut(s) 217, 218, 387, 711, 722, 723, 762
ScaI AGTACT 1 cut(s) 265
ScrFI CCNGG 5 cut(s) 413, 485, 760, 790, 862
SduI GDGCHC 4 cut(s) 221, 413, 726, 860
SinI GGWCC 3 cut(s) 387, 711, 762
SmiMI CAYNNNNRTG 1 cut(s) 1125
Sse9I AATT 7 cut(s) 127, 604, 622, 823, 871, 1245, 1281
SspI AATATT 1 cut(s) 1136
SspMI CTAG 4 cut(s) 6, 537, 1191, 1290
StyD4I CCNGG 5 cut(s) 411, 483, 758, 788, 860
StyI CCWWGG 1 cut(s) 634
TaaI ACNGT 5 cut(s) 202, 460, 1106, 1112, 1307
TaiI ACGT 4 cut(s) 93, 213, 339, 456
TaqI TCGA 2 cut(s) 249, 320
TaqII GACCGA 2 cut(s) 302, 404
TasI AATT 7 cut(s) 127, 604, 622, 823, 871, 1245, 1281
TatI WGTACW 2 cut(s) 263, 1063
TauI GCSGC 8 cut(s) 144, 152, 155, 903, 957, 960, 1010, 1030
TfiI GAWTC 3 cut(s) 290, 640, 1255
Tru1I TTAA 4 cut(s) 15, 527, 699, 1244
Tru9I TTAA 4 cut(s) 15, 527, 699, 1244
TscAI CASTG 3 cut(s) 697, 1155, 1282
TseFI GTSAC 3 cut(s) 241, 454, 1106
TseI GCWGC 6 cut(s) 69, 138, 515, 670, 908, 1004
Tsp45I GTSAC 3 cut(s) 241, 454, 1106
TspDTI ATGAA 4 cut(s) 248, 464, 542, 1109
TspGWI ACGGA 2 cut(s) 288, 1227
TspRI CASTG 3 cut(s) 697, 1155, 1282
Tth111I GACNNNGTC 1 cut(s) 89
Van91I CCANNNNNTGG 1 cut(s) 79
VpaK11BI GGWCC 3 cut(s) 387, 711, 762
XmiI GTMKAC 1 cut(s) 1021
XspI CTAG 4 cut(s) 6, 537, 1191, 1290
ZraI GACGTC 1 cut(s) 91
ZrmI AGTACT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.