Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008135

Physical Location & Seq

Genomic Coordinates Reverse (-)

2391168 .. 2394391

Gene Structure 3224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g04020.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGGGATTATGGCACGGTCTAATTCCACCGCCGAGCCCGACGACGACGCCGACACCGACACCATCCCATCGATGATCTCGAAGCTCAAGACAGCCTTCCTCCCCGCCGAATACGCACGCGCCGAGCGGGCATTACTCGCCAGAGAATCCAACCTGAAGCGAGAAATCGAGAACCTGAAGAAGGAGAACGCGAAGCTTCTGGAAGCGAACCAATTCAGAGAGCTGGAGATGCTGAGAGTGGAGACGGAGTCGAAAGGCGTGATCTTGGAGCAGAGGAGGAGGATCAGGGAGCTGGAGAGGCAGAAATTGAAGCTGGAGGGGTTAGTGGTGAGTGAGTACGAGGGTTGGAAGGGTCTGGCTTCGAAGCTGGAGGGAGATGCGAGGAGATTGAGCTGCGAGAAGGGGACGAGTGGTGGTGTGGTGGTGAAATTGGAGGTTGAGGGTGATGAGATTGGAGGCGTGGCGTCGAGTGTGAAAGATTCAGGTATTCGCAAATTTCCATCTGAAGATGCTGGTTTAAATGATAGACATTATGAGTGTGCTCCCAAGGAAACCGAGATGCTGTGTGAGAAGTCTGAAATACAGAAGGACACTGAATCTTTGAGTTTGACTGGTGTAGAAAGGAAGCCAAGGGTTCCTAAGAGAAAACCAGCTTCATCTTTAAGTGGTAGTGATGATGACGACAAAGAGGGTGGCAAGTTTAAGGAAGATAAAAATTTAAACAATGAGATGAAGCAACGCCAAAAGTTGAGCCTTGTGCCTGATTGTCCTTTTATCAACAATCATTGCACAGAAAAACTTGACTTTTCTGGTATTAAGGTCTCTGAAAACCAAAATTTACCAAATTATGAGCAAGTGAACTCAAGGGTATCTGAAGAGAAAATTGTGGCAGAACAGAAATCACAACTTTTTCTTAATGCTCCTATGGAAGTGAGTAGTGATTCTGATAGTTCTAGCTGCAGCTCAAGTTCCTCTGACTCTGAAGATGACAATCTATCTCAACTGAAGTTGACTATCTCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

342

Amino Acids

37.99

Weight (kDa)

5.07

Isoelectric Point (pI)

48.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008135)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04020 FvH4_5g04020 FvH4_5g04020 FvH4_5g04020
malus_domestica	MD06G1101500.v1.1
prunus_persica	Prupe.5G114900_v2.0.a1 Prupe.5G114900_v2.0.a1 Prupe.5G114900_v2.0.a1 Prupe.5G114900_v2.0.a1 Prupe.5G114900_v2.0.a1
pyrus_communis	pycom06g09670
rosa_chinensis	RchiOBHm_Chr7g0195491
rosa_laevigata	RLG00000004115
rosa_multiflora	Rmu_sc0013420.1_g000001 Rmu_sc0019107.1_g000003 Rmu_sc0042965.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260420
rosa_rugosa	Rorug07G0023900 Rorug07G0023900
rosa_samantha	Rh7AG151300 Rh7BG153000 Rh7CG156500 Rh7DG152300
rosa_wichuraiana	Rw7G012920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	127
AccII	CGCG	2 cut(s)	120, 191
AciI	CCGC	3 cut(s)	30, 105, 127
AclWI	GGATC	1 cut(s)	290
AcsI	RAATTY	3 cut(s)	494, 715, 835
AcuI	CTGAAG	6 cut(s)	176, 197, 525, 894, 1002, 1025
AcyI	GRCGYC	2 cut(s)	48, 464
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	1 cut(s)	310
Alw21I	GWGCWC	1 cut(s)	544
Alw26I	GTCTC	2 cut(s)	236, 826
AlwI	GGATC	1 cut(s)	290
ApeKI	GCWGC	3 cut(s)	393, 957, 960
ApoI	RAATTY	3 cut(s)	494, 715, 835
Asp700I	GAANNNNTTC	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	122
AsuHPI	GGTGA	3 cut(s)	340, 436, 455
AsuII	TTCGAA	1 cut(s)	362
BanII	GRGCYC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	544
BbvI	GCAGC	3 cut(s)	380, 944, 972
BccI	CCATC	3 cut(s)	71, 76, 508
BcoDI	GTCTC	2 cut(s)	236, 826
BfaI	CTAG	1 cut(s)	954
BfmI	CTRYAG	1 cut(s)	958
BglI	GCCNNNNNGGC	1 cut(s)	128
BisI	GCNGC	3 cut(s)	394, 958, 961
BlsI	GCNGC	3 cut(s)	395, 959, 962
BmiI	GGNNCC	1 cut(s)	636
BmsI	GCATC	4 cut(s)	219, 367, 499, 549
BpmI	CTGGAG	4 cut(s)	245, 314, 335, 389
Bpu14I	TTCGAA	1 cut(s)	362
BpuEI	CTTGAG	3 cut(s)	71, 847, 949
Bsa29I	ATCGAT	1 cut(s)	71
BsaBI	GATNNNNATC	1 cut(s)	990
BsaHI	GRCGYC	2 cut(s)	48, 464
BsaI	GGTCTC	1 cut(s)	826
BsaJI	CCNNGG	2 cut(s)	546, 629
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse1I	ACTGG	1 cut(s)	616
Bse3DI	GCAATG	1 cut(s)	784
Bse8I	GATNNNNATC	1 cut(s)	990
BseCI	ATCGAT	1 cut(s)	71
BseDI	CCNNGG	2 cut(s)	546, 629
BseGI	GGATG	1 cut(s)	63
BseJI	GATNNNNATC	1 cut(s)	990
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMI	GCAATG	1 cut(s)	784
BseMII	CTCAG	1 cut(s)	224
BseNI	ACTGG	1 cut(s)	616
BseRI	GAGGAG	3 cut(s)	289, 292, 397
BseXI	GCAGC	3 cut(s)	380, 944, 972
Bsh1236I	CGCG	2 cut(s)	120, 191
BshVI	ATCGAT	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	544
BslFI	GGGAC	1 cut(s)	418
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	2 cut(s)	236, 826
BsmBI	CGTCTC	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	418
Bso31I	GGTCTC	1 cut(s)	826
Bsp119I	TTCGAA	1 cut(s)	362
Bsp1286I	GDGCHC	2 cut(s)	39, 544
Bsp143I	GATC	3 cut(s)	75, 261, 282
BspACI	CCGC	3 cut(s)	30, 105, 127
BspCNI	CTCAG	1 cut(s)	225
BspDI	ATCGAT	1 cut(s)	71
BspFNI	CGCG	2 cut(s)	120, 191
BspLI	GGNNCC	1 cut(s)	636
BspMAI	CTGCAG	1 cut(s)	962
BspPI	GGATC	1 cut(s)	290
BspT104I	TTCGAA	1 cut(s)	362
BspTNI	GGTCTC	1 cut(s)	826
BsrBI	CCGCTC	1 cut(s)	127
BsrDI	GCAATG	1 cut(s)	784
BsrI	ACTGG	1 cut(s)	616
BssECI	CCNNGG	2 cut(s)	546, 629
BssMI	GATC	3 cut(s)	75, 261, 282
BssNI	GRCGYC	2 cut(s)	48, 464
BssT1I	CCWWGG	2 cut(s)	546, 629
Bst4CI	ACNGT	1 cut(s)	18
Bst6I	CTCTTC	1 cut(s)	870
BstACI	GRCGYC	2 cut(s)	48, 464
BstBI	TTCGAA	1 cut(s)	362
BstC8I	GCNNGC	2 cut(s)	118, 129
BstDEI	CTNAG	2 cut(s)	233, 639
BstENI	CCTNNNNNAGG	1 cut(s)	179
BstF5I	GGATG	1 cut(s)	63
BstFNI	CGCG	2 cut(s)	120, 191
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	3 cut(s)	78, 264, 285
BstMAI	GTCTC	2 cut(s)	236, 826
BstMBI	GATC	3 cut(s)	75, 261, 282
BstMWI	GCNNNNNNNGC	5 cut(s)	113, 128, 137, 229, 298
BstSFI	CTRYAG	1 cut(s)	958
BstUI	CGCG	2 cut(s)	120, 191
BstV1I	GCAGC	3 cut(s)	380, 944, 972
Bsu15I	ATCGAT	1 cut(s)	71
BsuTUI	ATCGAT	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	591
Cac8I	GCNNGC	2 cut(s)	118, 129
CfoI	GCGC	1 cut(s)	122
ClaI	ATCGAT	1 cut(s)	71
CseI	GACGC	2 cut(s)	56, 453
Csp6I	GTAC	1 cut(s)	337
CspCI	CAANNNNNGTGG	2 cut(s)	673, 708
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	2 cut(s)	233, 639
DpnI	GATC	3 cut(s)	77, 263, 284
DpnII	GATC	3 cut(s)	75, 261, 282
DraI	TTTAAA	2 cut(s)	519, 720
Eam1104I	CTCTTC	1 cut(s)	870
EarI	CTCTTC	1 cut(s)	870
Eco130I	CCWWGG	2 cut(s)	546, 629
Eco24I	GRGCYC	1 cut(s)	39
Eco31I	GGTCTC	1 cut(s)	826
Eco57I	CTGAAG	6 cut(s)	176, 197, 525, 894, 1002, 1025
EcoNI	CCTNNNNNAGG	1 cut(s)	179
EcoT14I	CCWWGG	2 cut(s)	546, 629
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	2 cut(s)	546, 629
Esp3I	CGTCTC	1 cut(s)	236
FaiI	YATR	4 cut(s)	11, 534, 849, 926
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FaqI	GGGAC	1 cut(s)	418
FauI	CCCGC	2 cut(s)	112, 120
Fnu4HI	GCNGC	3 cut(s)	394, 958, 961
FokI	GGATG	1 cut(s)	50
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	3 cut(s)	394, 958, 961
FspBI	CTAG	1 cut(s)	954
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	3 cut(s)	394, 958, 961
GsuI	CTGGAG	4 cut(s)	245, 314, 335, 389
HgaI	GACGC	2 cut(s)	56, 453
HhaI	GCGC	1 cut(s)	122
Hin1I	GRCGYC	2 cut(s)	48, 464
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HincII	GTYRAC	1 cut(s)	1011
HindII	GTYRAC	1 cut(s)	1011
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	6 cut(s)	146, 248, 479, 596, 941, 977
HphI	GGTGA	3 cut(s)	340, 436, 455
Hpy166II	GTNNAC	2 cut(s)	859, 1011
Hpy188I	TCNGA	8 cut(s)	218, 505, 577, 826, 874, 946, 976, 982
Hpy188III	TCNNGA	4 cut(s)	79, 88, 169, 200
Hpy8I	GTNNAC	2 cut(s)	859, 1011
Hpy99I	CGWCG	4 cut(s)	44, 47, 50, 469
HpyAV	CCTTC	5 cut(s)	106, 175, 343, 394, 580
HpyCH4III	ACNGT	1 cut(s)	18
HpyCH4V	TGCA	2 cut(s)	789, 960
HpyF10VI	GCNNNNNNNGC	5 cut(s)	113, 128, 137, 229, 298
HpyF3I	CTNAG	2 cut(s)	233, 639
Hsp92I	GRCGYC	2 cut(s)	48, 464
HspAI	GCGC	1 cut(s)	120
Kzo9I	GATC	3 cut(s)	75, 261, 282
LmnI	GCTCC	4 cut(s)	268, 289, 547, 925
Lsp1109I	GCAGC	3 cut(s)	380, 944, 972
LweI	GCATC	4 cut(s)	219, 367, 499, 549
MaeI	CTAG	1 cut(s)	954
MalI	GATC	3 cut(s)	77, 263, 284
MbiI	CCGCTC	1 cut(s)	127
MboI	GATC	3 cut(s)	75, 261, 282
MboII	GAAGA	5 cut(s)	190, 518, 719, 887, 995
MhlI	GDGCHC	2 cut(s)	39, 544
MluCI	AATT	9 cut(s)	22, 212, 305, 428, 494, 715, 835, 844, 882
MlyI	GAGTC	2 cut(s)	257, 971
MmeI	TCCRAC	2 cut(s)	174, 326
MroXI	GAANNNNTTC	1 cut(s)	212
MseI	TTAA	6 cut(s)	518, 662, 702, 719, 816, 915
MvnI	CGCG	2 cut(s)	120, 191
MwoI	GCNNNNNNNGC	5 cut(s)	113, 128, 137, 229, 298
NdeII	GATC	3 cut(s)	75, 261, 282
NlaIV	GGNNCC	1 cut(s)	636
NmeAIII	GCCGAG	2 cut(s)	58, 148
NspV	TTCGAA	1 cut(s)	362
PcsI	WCGNNNNNNNCGW	4 cut(s)	48, 54, 77, 120
PdmI	GAANNNNTTC	1 cut(s)	212
PfeI	GAWTC	4 cut(s)	146, 479, 596, 941
PflFI	GACNNNGTC	1 cut(s)	247
PkrI	GCNGC	3 cut(s)	395, 959, 962
PleI	GAGTC	2 cut(s)	256, 971
PpsI	GAGTC	2 cut(s)	256, 971
PspN4I	GGNNCC	1 cut(s)	636
PstI	CTGCAG	1 cut(s)	962
PsyI	GACNNNGTC	1 cut(s)	247
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SaqAI	TTAA	6 cut(s)	518, 662, 702, 719, 816, 915
SatI	GCNGC	3 cut(s)	394, 958, 961
Sau3AI	GATC	3 cut(s)	75, 261, 282
SchI	GAGTC	2 cut(s)	257, 971
SduI	GDGCHC	2 cut(s)	39, 544
SfaNI	GCATC	4 cut(s)	219, 367, 499, 549
SfcI	CTRYAG	1 cut(s)	958
SfuI	TTCGAA	1 cut(s)	362
SmlI	CTYRAG	3 cut(s)	86, 862, 964
SmoI	CTYRAG	3 cut(s)	86, 862, 964
Sse9I	AATT	9 cut(s)	22, 212, 305, 428, 494, 715, 835, 844, 882
SsiI	CCGC	3 cut(s)	30, 105, 127
SspMI	CTAG	1 cut(s)	954
StyI	CCWWGG	2 cut(s)	546, 629
TaaI	ACNGT	1 cut(s)	18
TaqI	TCGA	6 cut(s)	71, 80, 168, 251, 362, 467
TasI	AATT	9 cut(s)	22, 212, 305, 428, 494, 715, 835, 844, 882
TfiI	GAWTC	4 cut(s)	146, 479, 596, 941
Tru1I	TTAA	6 cut(s)	518, 662, 702, 719, 816, 915
Tru9I	TTAA	6 cut(s)	518, 662, 702, 719, 816, 915
TscAI	CASTG	1 cut(s)	598
TseI	GCWGC	3 cut(s)	393, 957, 960
TspDTI	ATGAA	2 cut(s)	645, 746
TspGWI	ACGGA	1 cut(s)	260
TspRI	CASTG	1 cut(s)	598
Tth111I	GACNNNGTC	1 cut(s)	247
XagI	CCTNNNNNAGG	1 cut(s)	179
XapI	RAATTY	3 cut(s)	494, 715, 835
XmnI	GAANNNNTTC	1 cut(s)	212
XspI	CTAG	1 cut(s)	954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.