Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008135

Physical Location & Seq

Genomic Coordinates Reverse (-)

56323533 .. 56326223

Gene Structure 2691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004115

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGGGGTTAGGGCACGGCCCAATCTCAGCGGCGAAGCCGAAGCAGAAGACAACGCCGGGACCGACACCATTCCGCTCATGATTTCGAAGCTCAAGACGGCGTTTCTCCACGCCGACTTCCAACGCGCCGAGCGGGCCTTACTCGCCAGAGAATCCAATCTGAGGCGAGAAATCGAGAAGCTGAAGAAGGAAAACGCGAGGCTTCTGGAAGACAACCAATTCCGGGAGCTGGCGATGCTGAGAGTGGAGACTGATTCGAAAGGTGTGATCTTTGAGCAGAGGAGGAAGATCAGGGAGCTGGAGACGCAGAAATTGAAGCTCGAGGCGTTGGTTAAGAGCGAGTATGAAGGATGGAAGGGTCTGATTTCGAAGCTGGAAGGAGATGCGAAGAAATTGAGCGGCGAAAAGGGTGTGGGTTTGAGGAGCAATGTTGGCGTGATGGTGAAATTAGAGAGGGAGTTCGGTGGAAATGAAGCTGGAGGAGGAAATGGAGGTGTCAAAGTTTCAGGTATTCGGAAATCTTCATCTGAAGATGCTGGTTTGATTGATAGACATAATGAGTGCGCTCCCAGGGAAATCGAGATGCTGTGTGAGAATTCTGAAATACATAAAGGCACTGGATCTTTGGGTTTGACTGGTGTAGAAAGGAAGCTAAGGGTTCTTAAAAGAAAACCAGCGTCATCTTTAAGTGGTAGTGATGATGAAAACGGGGGTGGCAATTTTAAGAAAGATAAAAACTCAGACAGTGAGATGAAGCAACTCCAGAAGTTGAGCGTTCAGCCTGATGGTCCTCTTTTCAAGCAATGCACGGAAATACTTGATTCTTCTGGTAGTAATGACTCTGGAAATCAAAATTTTCCAAGTAATGAGCAAGTGAACTCAAGGCAATCTGAAGAGAAAATTATGGCAGAACAGACGTCACAACCTTTTCTTAAGGCTCCTATGGAGGTGAGTAGTGCTTTTGATAATGATCCTCATGCCGATCTTAGTTCTAGTTGCAGTTCAAGTTCCTCTGACTCTGAAGATGACTATCTACTACTATCTGCACTTGATGATATTATGCCAAAAGCCAAAGCAAGAGAGGGGAGCTGTTCTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

367

Amino Acids

40.07

Weight (kDa)

5.5

Isoelectric Point (pI)

45.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008135)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04020 FvH4_5g04020 FvH4_5g04020 FvH4_5g04020
malus_domestica	MD06G1101500.v1.1
prunus_persica	Prupe.5G114900_v2.0.a1 Prupe.5G114900_v2.0.a1 Prupe.5G114900_v2.0.a1 Prupe.5G114900_v2.0.a1 Prupe.5G114900_v2.0.a1
pyrus_communis	pycom06g09670
rosa_chinensis	RchiOBHm_Chr7g0195491
rosa_laevigata	RLG00000004115
rosa_multiflora	Rmu_sc0013420.1_g000001 Rmu_sc0019107.1_g000003 Rmu_sc0042965.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260420
rosa_rugosa	Rorug07G0023900 Rorug07G0023900
rosa_samantha	Rh7AG151300 Rh7BG153000 Rh7CG156500 Rh7DG152300
rosa_wichuraiana	Rw7G012920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	920
AccBSI	CCGCTC	3 cut(s)	76, 133, 399
AccII	CGCG	2 cut(s)	126, 197
AciI	CCGC	4 cut(s)	30, 74, 133, 399
AclWI	GGATC	2 cut(s)	628, 965
AcsI	RAATTY	2 cut(s)	595, 853
AcuI	CTGAAG	4 cut(s)	203, 549, 912, 1041
AcyI	GRCGYC	1 cut(s)	917
AfiI	CCNNNNNNNGG	3 cut(s)	162, 223, 229
AflII	CTTAAG	1 cut(s)	932
AgsI	TTSAA	3 cut(s)	316, 799, 1005
AjnI	CCWGG	1 cut(s)	569
AluBI	AGCT	9 cut(s)	91, 181, 229, 298, 319, 373, 476, 652, 1089
AluI	AGCT	9 cut(s)	91, 181, 229, 298, 319, 373, 476, 652, 1089
Alw26I	GTCTC	2 cut(s)	242, 296
AlwI	GGATC	2 cut(s)	628, 965
Ama87I	CYCGRG	1 cut(s)	320
AoxI	GGCC	2 cut(s)	17, 135
ApoI	RAATTY	2 cut(s)	595, 853
AspLEI	GCGC	2 cut(s)	128, 566
AspS9I	GGNCC	4 cut(s)	18, 60, 135, 788
AsuC2I	CCSGG	2 cut(s)	58, 224
AsuHPI	GGTGA	2 cut(s)	454, 961
AsuII	TTCGAA	3 cut(s)	86, 257, 368
AvaI	CYCGRG	1 cut(s)	320
AvaII	GGWCC	2 cut(s)	60, 788
BaeGI	GKGCMC	1 cut(s)	16
BbsI	GAAGAC	2 cut(s)	54, 216
BccI	CCATC	3 cut(s)	345, 433, 779
BceAI	ACGGC	2 cut(s)	32, 114
BciT130I	CCWGG	1 cut(s)	571
BcnI	CCSGG	2 cut(s)	58, 224
BcoDI	GTCTC	2 cut(s)	242, 296
BfaI	CTAG	1 cut(s)	993
BfrI	CTTAAG	1 cut(s)	932
BglI	GCCNNNNNGGC	1 cut(s)	134
BisI	GCNGC	2 cut(s)	31, 400
BlsI	GCNGC	2 cut(s)	32, 401
Bme1390I	CCNGG	3 cut(s)	58, 224, 571
Bme18I	GGWCC	2 cut(s)	60, 788
BmeT110I	CYCGRG	1 cut(s)	320
BmgT120I	GGNCC	4 cut(s)	18, 60, 135, 788
BmiI	GGNNCC	2 cut(s)	61, 939
BmrFI	CCNGG	3 cut(s)	58, 224, 571
BmsI	GCATC	4 cut(s)	225, 373, 523, 573
BpiI	GAAGAC	2 cut(s)	54, 216
BpmI	CTGGAG	3 cut(s)	320, 498, 746
Bpu10I	CCTNAGC	1 cut(s)	653
Bpu14I	TTCGAA	3 cut(s)	86, 257, 368
BpuEI	CTTGAG	2 cut(s)	77, 865
BpuMI	CCSGG	2 cut(s)	58, 224
BsaBI	GATNNNNATC	2 cut(s)	969, 1029
BsaHI	GRCGYC	1 cut(s)	917
BsaJI	CCNNGG	2 cut(s)	569, 570
Bsc4I	CCNNNNNNNGG	3 cut(s)	162, 223, 229
Bse1I	ACTGG	2 cut(s)	622, 640
Bse3DI	GCAATG	2 cut(s)	433, 809
Bse8I	GATNNNNATC	2 cut(s)	969, 1029
BseBI	CCWGG	1 cut(s)	571
BseDI	CCNNGG	2 cut(s)	569, 570
BseGI	GGATG	1 cut(s)	356
BseJI	GATNNNNATC	2 cut(s)	969, 1029
BseLI	CCNNNNNNNGG	3 cut(s)	162, 223, 229
BseMI	GCAATG	2 cut(s)	433, 809
BseMII	CTCAG	4 cut(s)	40, 152, 230, 753
BseNI	ACTGG	2 cut(s)	622, 640
BseRI	GAGGAG	3 cut(s)	295, 436, 495
BseSI	GKGCMC	1 cut(s)	16
BsgI	GTGCAG	1 cut(s)	1029
Bsh1236I	CGCG	2 cut(s)	126, 197
BshFI	GGCC	2 cut(s)	19, 137
BsiHKCI	CYCGRG	1 cut(s)	320
BsiSI	CCGG	2 cut(s)	57, 223
BslFI	GGGAC	1 cut(s)	73
BslI	CCNNNNNNNGG	3 cut(s)	162, 223, 229
BsmAI	GTCTC	2 cut(s)	242, 296
BsmBI	CGTCTC	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	2 cut(s)	19, 137
BsoBI	CYCGRG	1 cut(s)	320
Bsp119I	TTCGAA	3 cut(s)	86, 257, 368
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp143I	GATC	5 cut(s)	267, 288, 620, 970, 982
BspACI	CCGC	4 cut(s)	30, 74, 133, 399
BspANI	GGCC	2 cut(s)	19, 137
BspCNI	CTCAG	4 cut(s)	39, 153, 231, 752
BspFNI	CGCG	2 cut(s)	126, 197
BspHI	TCATGA	1 cut(s)	78
BspLI	GGNNCC	2 cut(s)	61, 939
BspPI	GGATC	2 cut(s)	628, 965
BspT104I	TTCGAA	3 cut(s)	86, 257, 368
BspTI	CTTAAG	1 cut(s)	932
BsrBI	CCGCTC	3 cut(s)	76, 133, 399
BsrDI	GCAATG	2 cut(s)	433, 809
BsrI	ACTGG	2 cut(s)	622, 640
BssECI	CCNNGG	2 cut(s)	569, 570
BssMI	GATC	5 cut(s)	267, 288, 620, 970, 982
BssNI	GRCGYC	1 cut(s)	917
Bst2UI	CCWGG	1 cut(s)	571
Bst4CI	ACNGT	1 cut(s)	746
Bst6I	CTCTTC	1 cut(s)	888
BstACI	GRCGYC	1 cut(s)	917
BstAFI	CTTAAG	1 cut(s)	932
BstBI	TTCGAA	3 cut(s)	86, 257, 368
BstC8I	GCNNGC	2 cut(s)	135, 231
BstDEI	CTNAG	6 cut(s)	26, 161, 239, 653, 739, 986
BstF5I	GGATG	1 cut(s)	356
BstFNI	CGCG	2 cut(s)	126, 197
BstHHI	GCGC	2 cut(s)	128, 566
BstKTI	GATC	5 cut(s)	270, 291, 623, 973, 985
BstMAI	GTCTC	2 cut(s)	242, 296
BstMBI	GATC	5 cut(s)	267, 288, 620, 970, 982
BstMWI	GCNNNNNNNGC	5 cut(s)	134, 143, 235, 304, 432
BstNI	CCWGG	1 cut(s)	571
BstSCI	CCNGG	3 cut(s)	56, 222, 569
BstSLI	GKGCMC	1 cut(s)	16
BstUI	CGCG	2 cut(s)	126, 197
BstV2I	GAAGAC	2 cut(s)	54, 216
BstX2I	RGATCY	1 cut(s)	620
BstYI	RGATCY	1 cut(s)	620
BsuRI	GGCC	2 cut(s)	19, 137
BtgZI	GCGATG	1 cut(s)	248
BtsCI	GGATG	1 cut(s)	356
BtsIMutI	CAGTG	2 cut(s)	615, 751
Cac8I	GCNNGC	2 cut(s)	135, 231
CciI	TCATGA	1 cut(s)	78
CfoI	GCGC	2 cut(s)	128, 566
Cfr13I	GGNCC	4 cut(s)	18, 60, 135, 788
CseI	GACGC	2 cut(s)	313, 666
CviAII	CATG	2 cut(s)	79, 977
DdeI	CTNAG	6 cut(s)	26, 161, 239, 653, 739, 986
DpnI	GATC	5 cut(s)	269, 290, 622, 972, 984
DpnII	GATC	5 cut(s)	267, 288, 620, 970, 982
Eam1104I	CTCTTC	1 cut(s)	888
EarI	CTCTTC	1 cut(s)	888
Eco47I	GGWCC	2 cut(s)	60, 788
Eco57I	CTGAAG	4 cut(s)	203, 549, 912, 1041
Eco88I	CYCGRG	1 cut(s)	320
EcoRI	GAATTC	1 cut(s)	595
EcoRII	CCWGG	1 cut(s)	569
Esp3I	CGTCTC	1 cut(s)	296
FaeI	CATG	2 cut(s)	82, 980
FaiI	YATR	8 cut(s)	80, 345, 555, 609, 905, 944, 978, 1061
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	2 cut(s)	78, 976
FauI	CCCGC	1 cut(s)	126
Fnu4HI	GCNGC	2 cut(s)	31, 400
FokI	GGATG	1 cut(s)	363
Fsp4HI	GCNGC	2 cut(s)	31, 400
FspBI	CTAG	1 cut(s)	993
GlaI	GCGC	2 cut(s)	127, 565
GluI	GCNGC	2 cut(s)	31, 400
GsuI	CTGGAG	3 cut(s)	320, 498, 746
HaeIII	GGCC	2 cut(s)	19, 137
HapII	CCGG	2 cut(s)	57, 223
HgaI	GACGC	2 cut(s)	313, 666
HhaI	GCGC	2 cut(s)	128, 566
Hin1I	GRCGYC	1 cut(s)	917
Hin1II	CATG	2 cut(s)	82, 980
Hin6I	GCGC	2 cut(s)	126, 564
HinP1I	GCGC	2 cut(s)	126, 564
HinfI	GANTC	5 cut(s)	152, 254, 821, 839, 1016
HpaII	CCGG	2 cut(s)	57, 223
HphI	GGTGA	2 cut(s)	454, 961
Hpy166II	GTNNAC	1 cut(s)	877
Hpy188I	TCNGA	9 cut(s)	162, 363, 516, 529, 601, 742, 892, 1015, 1021
Hpy188III	TCNNGA	7 cut(s)	79, 94, 175, 206, 580, 763, 843
Hpy8I	GTNNAC	1 cut(s)	877
HpyAV	CCTTC	4 cut(s)	181, 341, 349, 371
HpyCH4III	ACNGT	1 cut(s)	746
HpyCH4IV	ACGT	1 cut(s)	917
HpyCH4V	TGCA	3 cut(s)	807, 999, 1046
HpyF10VI	GCNNNNNNNGC	5 cut(s)	134, 143, 235, 304, 432
HpyF3I	CTNAG	6 cut(s)	26, 161, 239, 653, 739, 986
HpySE526I	ACGT	1 cut(s)	917
Hsp92I	GRCGYC	1 cut(s)	917
Hsp92II	CATG	2 cut(s)	82, 980
HspAI	GCGC	2 cut(s)	126, 564
Kzo9I	GATC	5 cut(s)	267, 288, 620, 970, 982
LmnI	GCTCC	6 cut(s)	226, 295, 423, 571, 943, 1086
LweI	GCATC	4 cut(s)	225, 373, 523, 573
MaeI	CTAG	1 cut(s)	993
MaeII	ACGT	1 cut(s)	917
MaeIII	GTNAC	1 cut(s)	918
MalI	GATC	5 cut(s)	269, 290, 622, 972, 984
MbiI	CCGCTC	3 cut(s)	76, 133, 399
MboI	GATC	5 cut(s)	267, 288, 620, 970, 982
MflI	RGATCY	1 cut(s)	620
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	8 cut(s)	218, 311, 392, 446, 595, 718, 853, 900
MlyI	GAGTC	2 cut(s)	833, 1010
MmeI	TCCRAC	1 cut(s)	145
MseI	TTAA	5 cut(s)	333, 663, 686, 723, 933
MspA1I	CMGCKG	1 cut(s)	30
MspCI	CTTAAG	1 cut(s)	932
MspI	CCGG	2 cut(s)	57, 223
MspR9I	CCNGG	3 cut(s)	58, 224, 571
MvaI	CCWGG	1 cut(s)	571
MvnI	CGCG	2 cut(s)	126, 197
MwoI	GCNNNNNNNGC	5 cut(s)	134, 143, 235, 304, 432
NciI	CCSGG	2 cut(s)	58, 224
NdeII	GATC	5 cut(s)	267, 288, 620, 970, 982
NlaIII	CATG	2 cut(s)	82, 980
NlaIV	GGNNCC	2 cut(s)	61, 939
NmeAIII	GCCGAG	1 cut(s)	154
NmuCI	GTSAC	1 cut(s)	918
NspV	TTCGAA	3 cut(s)	86, 257, 368
PaeR7I	CTCGAG	1 cut(s)	320
PagI	TCATGA	1 cut(s)	78
PasI	CCCWGGG	1 cut(s)	570
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PfeI	GAWTC	3 cut(s)	152, 254, 821
PfoI	TCCNGGA	1 cut(s)	222
PkrI	GCNGC	2 cut(s)	32, 401
PleI	GAGTC	2 cut(s)	833, 1010
PpsI	GAGTC	2 cut(s)	833, 1010
Psp6I	CCWGG	1 cut(s)	569
PspGI	CCWGG	1 cut(s)	569
PspN4I	GGNNCC	2 cut(s)	61, 939
PspPI	GGNCC	4 cut(s)	18, 60, 135, 788
PspXI	VCTCGAGB	1 cut(s)	320
PsuI	RGATCY	1 cut(s)	620
SaqAI	TTAA	5 cut(s)	333, 663, 686, 723, 933
SatI	GCNGC	2 cut(s)	31, 400
Sau3AI	GATC	5 cut(s)	267, 288, 620, 970, 982
Sau96I	GGNCC	4 cut(s)	18, 60, 135, 788
SchI	GAGTC	2 cut(s)	833, 1010
ScrFI	CCNGG	3 cut(s)	58, 224, 571
SduI	GDGCHC	1 cut(s)	16
SfaNI	GCATC	4 cut(s)	225, 373, 523, 573
Sfr274I	CTCGAG	1 cut(s)	320
SfuI	TTCGAA	3 cut(s)	86, 257, 368
SinI	GGWCC	2 cut(s)	60, 788
SlaI	CTCGAG	1 cut(s)	320
SmlI	CTYRAG	4 cut(s)	92, 320, 880, 932
SmoI	CTYRAG	4 cut(s)	92, 320, 880, 932
Sse9I	AATT	8 cut(s)	218, 311, 392, 446, 595, 718, 853, 900
SsiI	CCGC	4 cut(s)	30, 74, 133, 399
SspMI	CTAG	1 cut(s)	993
StyD4I	CCNGG	3 cut(s)	56, 222, 569
TaaI	ACNGT	1 cut(s)	746
TaiI	ACGT	1 cut(s)	920
TaqI	TCGA	6 cut(s)	86, 174, 257, 321, 368, 579
TaqII	GACCGA	1 cut(s)	77
TasI	AATT	8 cut(s)	218, 311, 392, 446, 595, 718, 853, 900
TauI	GCSGC	2 cut(s)	33, 402
TfiI	GAWTC	3 cut(s)	152, 254, 821
Tru1I	TTAA	5 cut(s)	333, 663, 686, 723, 933
Tru9I	TTAA	5 cut(s)	333, 663, 686, 723, 933
TscAI	CASTG	2 cut(s)	622, 751
TseFI	GTSAC	1 cut(s)	918
Tsp45I	GTSAC	1 cut(s)	918
TspDTI	ATGAA	5 cut(s)	360, 486, 513, 717, 767
TspGWI	ACGGA	1 cut(s)	824
TspRI	CASTG	2 cut(s)	622, 751
Vha464I	CTTAAG	1 cut(s)	932
VpaK11BI	GGWCC	2 cut(s)	60, 788
XapI	RAATTY	2 cut(s)	595, 853
XhoI	CTCGAG	1 cut(s)	320
XspI	CTAG	1 cut(s)	993
ZraI	GACGTC	1 cut(s)	918

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.