Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0008135

Physical Location & Seq

Genomic Coordinates Reverse (-)

23804147 .. 23807391

Gene Structure 3245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1101500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGATTTCGAATCTGCGGGCGACGTTTTTGTCTCGGGATTTCGACCGAGCTGAAGAGAATTTAGTAGCCCGTGAGGTTAAGCTGAAGAGGGAGATTAAAGACCTGAAGAACAAGAATATTAAGCTGGAAGAACAGCACCAGTTTGATCAGCTGGAAATGCTCAAAGTTGCGGATGAGCGAAATGTTGCGAACGAGAGATACCAAAAGCTGTTGCAGGAGATGAAGAGGGGAGTTGGAGGAGATGACAACGATGCGGTTATAGAGCTGATGAGGAAGTGCAGTGAGTTGGAGGTTGAGAAAAAGAAGCTTGAGGTTCTGCTTGAACGGGAATATTCGGAAACGGAGAGAAGACTTTCGAGGATAGAGGAGAAAGCAGAGAAATTGTGGAATGGGAATCAGAGTGCAACCTCTCTCCCCCCTGTGATAAATTTGGAGAATGTGAAGTTTAATGGAAATGGAAGCGGGGCAGCGAGTGCACAAGACCCTTCTCCAAGCGATCCTTCGCATTCTAAAGGAAATGGAGATCAGCAAACTTCAGGTGCTCTGAAATCCCTGATTTTGGTTATTGATAGTGATGATGACAATAATGGAAACCCCGAAGCCAATGACTATTCAGCTTTGCCAAGTGTAGAACAGAATCCAAAGGTGCTCAAAAGAAAGCGAACTTCATCTTTAAGTTCTAGTGATACCAATGATACTGATGCAATGCCCTTAAGACAAGAAGAAAAAAAGGGGGCAGAAGAGGAGTCACAATTTTTAAGGTCTCCTGTGCATGTGGGTGATGATTGCAATAGTGATGACAGTTCTAGTTCTACTTCCAGTTCCAGTTCTTCTGACTCTGAGAATGGCAATGGAGGTCGGTCCTTCTATGCTGCAATTCAAAAGGTCAAAGCAACCCAGGAACTCCGCTACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

306

Amino Acids

34.0

Weight (kDa)

5.01

Isoelectric Point (pI)

56.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008135)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04020 FvH4_5g04020 FvH4_5g04020 FvH4_5g04020
malus_domestica	MD06G1101500.v1.1
prunus_persica	Prupe.5G114900_v2.0.a1 Prupe.5G114900_v2.0.a1 Prupe.5G114900_v2.0.a1 Prupe.5G114900_v2.0.a1 Prupe.5G114900_v2.0.a1
pyrus_communis	pycom06g09670
rosa_chinensis	RchiOBHm_Chr7g0195491
rosa_laevigata	RLG00000004115
rosa_multiflora	Rmu_sc0013420.1_g000001 Rmu_sc0019107.1_g000003 Rmu_sc0042965.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260420
rosa_rugosa	Rorug07G0023900 Rorug07G0023900
rosa_samantha	Rh7AG151300 Rh7BG153000 Rh7CG156500 Rh7DG152300
rosa_wichuraiana	Rw7G012920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	28
AciI	CCGC	5 cut(s)	16, 170, 254, 462, 907
AclWI	GGATC	1 cut(s)	491
AcsI	RAATTY	2 cut(s)	58, 427
AcuI	CTGAAG	4 cut(s)	72, 104, 125, 519
AfiI	CCNNNNNNNGG	1 cut(s)	559
AflII	CTTAAG	1 cut(s)	712
AgsI	TTSAA	2 cut(s)	323, 881
AjnI	CCWGG	1 cut(s)	897
AjuI	GAANNNNNNNTTGG	2 cut(s)	484, 516
AluBI	AGCT	8 cut(s)	50, 82, 124, 151, 208, 265, 307, 617
AluI	AGCT	8 cut(s)	50, 82, 124, 151, 208, 265, 307, 617
Alw21I	GWGCWC	3 cut(s)	478, 544, 651
Alw26I	GTCTC	2 cut(s)	36, 768
Alw44I	GTGCAC	1 cut(s)	474
AlwI	GGATC	1 cut(s)	491
Ama87I	CYCGRG	1 cut(s)	33
ApaLI	GTGCAC	1 cut(s)	474
ApeKI	GCWGC	2 cut(s)	467, 872
ApoI	RAATTY	2 cut(s)	58, 427
Asp700I	GAANNNNTTC	1 cut(s)	352
AspS9I	GGNCC	1 cut(s)	861
AsuHPI	GGTGA	1 cut(s)	791
AsuII	TTCGAA	1 cut(s)	8
AvaI	CYCGRG	1 cut(s)	33
AvaII	GGWCC	1 cut(s)	861
BaeGI	GKGCMC	1 cut(s)	478
BbsI	GAAGAC	1 cut(s)	355
Bbv12I	GWGCWC	3 cut(s)	478, 544, 651
BbvI	GCAGC	2 cut(s)	479, 859
BciT130I	CCWGG	1 cut(s)	899
BclI	TGATCA	1 cut(s)	145
BcoDI	GTCTC	2 cut(s)	36, 768
BfaI	CTAG	2 cut(s)	681, 807
BfrI	CTTAAG	1 cut(s)	712
BisI	GCNGC	2 cut(s)	468, 873
BlsI	GCNGC	2 cut(s)	469, 874
Bme1390I	CCNGG	1 cut(s)	899
Bme18I	GGWCC	1 cut(s)	861
BmeT110I	CYCGRG	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	861
BmrFI	CCNGG	1 cut(s)	899
BmsI	GCATC	2 cut(s)	241, 691
BpiI	GAAGAC	1 cut(s)	355
Bpu14I	TTCGAA	1 cut(s)	8
BpuEI	CTTGAG	1 cut(s)	329
BsaI	GGTCTC	1 cut(s)	768
BsaJI	CCNNGG	1 cut(s)	897
Bsc4I	CCNNNNNNNGG	1 cut(s)	559
Bse1I	ACTGG	3 cut(s)	139, 819, 825
Bse3DI	GCAATG	2 cut(s)	711, 856
BseBI	CCWGG	1 cut(s)	899
BseDI	CCNNGG	1 cut(s)	897
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	1 cut(s)	559
BseMI	GCAATG	2 cut(s)	711, 856
BseMII	CTCAG	1 cut(s)	831
BseNI	ACTGG	3 cut(s)	139, 819, 825
BseRI	GAGGAG	3 cut(s)	252, 380, 758
BseSI	GKGCMC	1 cut(s)	478
BseXI	GCAGC	2 cut(s)	479, 859
BsgI	GTGCAG	1 cut(s)	298
Bsh1285I	CGRYCG	1 cut(s)	46
BsiEI	CGRYCG	1 cut(s)	46
BsiHKAI	GWGCWC	3 cut(s)	478, 544, 651
BsiHKCI	CYCGRG	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	559
BsmAI	GTCTC	2 cut(s)	36, 768
BsmI	GAATGC	1 cut(s)	505
Bso31I	GGTCTC	1 cut(s)	768
BsoBI	CYCGRG	1 cut(s)	33
Bsp119I	TTCGAA	1 cut(s)	8
Bsp1286I	GDGCHC	3 cut(s)	478, 544, 651
Bsp143I	GATC	3 cut(s)	145, 496, 523
BspACI	CCGC	5 cut(s)	16, 170, 254, 462, 907
BspCNI	CTCAG	1 cut(s)	832
BspPI	GGATC	1 cut(s)	491
BspT104I	TTCGAA	1 cut(s)	8
BspTI	CTTAAG	1 cut(s)	712
BspTNI	GGTCTC	1 cut(s)	768
BsrDI	GCAATG	2 cut(s)	711, 856
BsrI	ACTGG	3 cut(s)	139, 819, 825
BssECI	CCNNGG	1 cut(s)	897
BssMI	GATC	3 cut(s)	145, 496, 523
Bst2UI	CCWGG	1 cut(s)	899
Bst4CI	ACNGT	1 cut(s)	803
Bst6I	CTCTTC	4 cut(s)	48, 80, 218, 735
BstAFI	CTTAAG	1 cut(s)	712
BstAPI	GCANNNNNTGC	1 cut(s)	473
BstBI	TTCGAA	1 cut(s)	8
BstC8I	GCNNGC	1 cut(s)	18
BstDEI	CTNAG	1 cut(s)	840
BstF5I	GGATG	1 cut(s)	178
BstKTI	GATC	3 cut(s)	148, 499, 526
BstMAI	GTCTC	2 cut(s)	36, 768
BstMBI	GATC	3 cut(s)	145, 496, 523
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 473
BstNI	CCWGG	1 cut(s)	899
BstNSI	RCATGY	1 cut(s)	776
BstSCI	CCNGG	1 cut(s)	897
BstSLI	GKGCMC	1 cut(s)	478
BstV1I	GCAGC	2 cut(s)	479, 859
BstV2I	GAAGAC	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	178
BtsI	GCAGTG	1 cut(s)	286
BtsIMutI	CAGTG	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	18
Cfr13I	GGNCC	1 cut(s)	861
CviAII	CATG	1 cut(s)	773
DdeI	CTNAG	1 cut(s)	840
DpnI	GATC	3 cut(s)	147, 498, 525
DpnII	GATC	3 cut(s)	145, 496, 523
DrdI	GACNNNNNNGTC	1 cut(s)	28
DseDI	GACNNNNNNGTC	1 cut(s)	28
Eam1104I	CTCTTC	4 cut(s)	48, 80, 218, 735
EarI	CTCTTC	4 cut(s)	48, 80, 218, 735
Eco31I	GGTCTC	1 cut(s)	768
Eco47I	GGWCC	1 cut(s)	861
Eco57I	CTGAAG	4 cut(s)	72, 104, 125, 519
Eco88I	CYCGRG	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	897
FaeI	CATG	1 cut(s)	776
FaiI	YATR	3 cut(s)	260, 774, 870
FalI	AAGNNNNNCTT	2 cut(s)	484, 516
FatI	CATG	1 cut(s)	772
FauI	CCCGC	2 cut(s)	9, 455
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	2 cut(s)	468, 873
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	2 cut(s)	468, 873
FspBI	CTAG	2 cut(s)	681, 807
GluI	GCNGC	2 cut(s)	468, 873
Hin1II	CATG	1 cut(s)	776
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	5 cut(s)	10, 394, 637, 746, 836
HphI	GGTGA	1 cut(s)	791
Hpy166II	GTNNAC	1 cut(s)	476
Hpy188I	TCNGA	5 cut(s)	337, 399, 546, 835, 841
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	1 cut(s)	476
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	3 cut(s)	495, 510, 874
HpyCH4III	ACNGT	1 cut(s)	803
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	8 cut(s)	214, 279, 404, 476, 704, 772, 789, 875
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 473
HpyF3I	CTNAG	1 cut(s)	840
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	1 cut(s)	776
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	3 cut(s)	145, 496, 523
Lsp1109I	GCAGC	2 cut(s)	479, 859
LweI	GCATC	2 cut(s)	241, 691
MaeI	CTAG	2 cut(s)	681, 807
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	747
MalI	GATC	3 cut(s)	147, 498, 525
MboI	GATC	3 cut(s)	145, 496, 523
MboII	GAAGA	9 cut(s)	65, 97, 118, 140, 235, 360, 734, 752, 822
MhlI	GDGCHC	3 cut(s)	478, 544, 651
MluCI	AATT	5 cut(s)	58, 380, 427, 752, 876
MlyI	GAGTC	2 cut(s)	755, 830
MmeI	TCCRAC	2 cut(s)	214, 267
MroXI	GAANNNNTTC	1 cut(s)	352
MseI	TTAA	7 cut(s)	78, 96, 120, 447, 674, 713, 758
MslI	CAYNNNNRTG	1 cut(s)	777
MspA1I	CMGCKG	1 cut(s)	151
MspCI	CTTAAG	1 cut(s)	712
MspR9I	CCNGG	1 cut(s)	899
Mva1269I	GAATGC	1 cut(s)	505
MvaI	CCWGG	1 cut(s)	899
MwoI	GCNNNNNNNGC	2 cut(s)	157, 473
NdeII	GATC	3 cut(s)	145, 496, 523
NlaIII	CATG	1 cut(s)	776
NmuCI	GTSAC	1 cut(s)	747
NspI	RCATGY	1 cut(s)	776
NspV	TTCGAA	1 cut(s)	8
PctI	GAATGC	1 cut(s)	505
PdmI	GAANNNNTTC	1 cut(s)	352
PfeI	GAWTC	3 cut(s)	10, 394, 637
PkrI	GCNGC	2 cut(s)	469, 874
PleI	GAGTC	2 cut(s)	754, 830
PpsI	GAGTC	2 cut(s)	754, 830
Psp6I	CCWGG	1 cut(s)	897
PspGI	CCWGG	1 cut(s)	897
PspPI	GGNCC	1 cut(s)	861
PsrI	GAACNNNNNNTAC	2 cut(s)	182, 214
PvuII	CAGCTG	1 cut(s)	151
RseI	CAYNNNNRTG	1 cut(s)	777
SaqAI	TTAA	7 cut(s)	78, 96, 120, 447, 674, 713, 758
SatI	GCNGC	2 cut(s)	468, 873
Sau3AI	GATC	3 cut(s)	145, 496, 523
Sau96I	GGNCC	1 cut(s)	861
SchI	GAGTC	2 cut(s)	755, 830
ScrFI	CCNGG	1 cut(s)	899
SduI	GDGCHC	3 cut(s)	478, 544, 651
SfaNI	GCATC	2 cut(s)	241, 691
SfuI	TTCGAA	1 cut(s)	8
SinI	GGWCC	1 cut(s)	861
SmiMI	CAYNNNNRTG	1 cut(s)	777
SmlI	CTYRAG	2 cut(s)	308, 712
SmoI	CTYRAG	2 cut(s)	308, 712
Sse9I	AATT	5 cut(s)	58, 380, 427, 752, 876
SsiI	CCGC	5 cut(s)	16, 170, 254, 462, 907
SspI	AATATT	2 cut(s)	118, 332
SspMI	CTAG	2 cut(s)	681, 807
StyD4I	CCNGG	1 cut(s)	897
TaaI	ACNGT	1 cut(s)	803
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	3 cut(s)	8, 42, 356
TaqII	GACCGA	2 cut(s)	60, 849
TasI	AATT	5 cut(s)	58, 380, 427, 752, 876
TfiI	GAWTC	3 cut(s)	10, 394, 637
Tru1I	TTAA	7 cut(s)	78, 96, 120, 447, 674, 713, 758
Tru9I	TTAA	7 cut(s)	78, 96, 120, 447, 674, 713, 758
TscAI	CASTG	1 cut(s)	286
TseFI	GTSAC	1 cut(s)	747
TseI	GCWGC	2 cut(s)	467, 872
Tsp45I	GTSAC	1 cut(s)	747
TspDTI	ATGAA	2 cut(s)	236, 657
TspGWI	ACGGA	1 cut(s)	356
TspRI	CASTG	1 cut(s)	286
Vha464I	CTTAAG	1 cut(s)	712
VneI	GTGCAC	1 cut(s)	474
VpaK11BI	GGWCC	1 cut(s)	861
XapI	RAATTY	2 cut(s)	58, 427
XceI	RCATGY	1 cut(s)	776
XmnI	GAANNNNTTC	1 cut(s)	352
XspI	CTAG	2 cut(s)	681, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.