Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0008135

Physical Location & Seq

Genomic Coordinates Reverse (-)

14966296 .. 14968633

Gene Structure 2338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g09670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGATTTCGAATCTGCGGGCGACGTTTTTGTCTCGGGATTTCGACCGAGCTGAAGAGAATTTAGTAGCCCGTGAGGTTAAGCTGAAGAGGGAGATTAAAGACCTGAAGAACAAGAATGTTAAGCTGGAAGAACAGCACCAGTTTGATCAGCTGGACATGCTCAAAGTTGCGGATGAGCGAAATGTTGCGAACGAGAGATACCAAAAGCTGTTGCAGGAGATGAAGAGGGGAGTTGGAGGAGATGATAACGATGCGGTTATAGGGCTGATGAGGAAGTGCAGTGAGTTGGAGGTTGAGAAAAAGAAGCTTGAGGTTCTGCTTGAACGGGAATATTCGGAAACAGAGAGAAGACTTTCGAGGATAGAGGCGAAAGCAGAGAAATTGTGGAATGGGAATCATAGTGCAACATCTCTCCCCCCTGTGATAAATTTGGAGAATGTGTCTAAGTTTAATGGAAATGGAAGCGGGGCAGCGAGTGCACAAGACCCTTCTCCAAGCCATCCTTCGCATTCTAAAGGAAATGGAGATCGGCAAACTTCAGGTGCTCAGAAATCCCTTATTTTGGTTATTGATAGTGATGATGACAATAATGGAAACCCCGAAGCCAATGACCATTCAGCTTTGCCAAGTGCAGAACAGAATCCAAAGGTGCTCAAAAGAAAGCGAACTTCATCTTTAAGTCCTGGTGATACCGATGATAGTGATGCAATGCCCTTAAGACAAGAAGAAAAAAAGGGGGCAGAAGAGCAGTCACAATTTTTGAGGTCTCCTGTGCAGGTGGGTGATGATTGCAATAGTGATGACGGTTCTAGTTCTACTTCCAGTTCCAGTTCTTCTGACTCTGAGAATGGCAATGGAGGTCGGTCTTTCTATGCTGCAATTCAAAAGGTCAAAGCAACCCAGGAACGCCGCTACGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

307

Amino Acids

33.92

Weight (kDa)

5.4

Isoelectric Point (pI)

53.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008135)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04020 FvH4_5g04020 FvH4_5g04020 FvH4_5g04020
malus_domestica	MD06G1101500.v1.1
prunus_persica	Prupe.5G114900_v2.0.a1 Prupe.5G114900_v2.0.a1 Prupe.5G114900_v2.0.a1 Prupe.5G114900_v2.0.a1 Prupe.5G114900_v2.0.a1
pyrus_communis	pycom06g09670
rosa_chinensis	RchiOBHm_Chr7g0195491
rosa_laevigata	RLG00000004115
rosa_multiflora	Rmu_sc0013420.1_g000001 Rmu_sc0019107.1_g000003 Rmu_sc0042965.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260420
rosa_rugosa	Rorug07G0023900 Rorug07G0023900
rosa_samantha	Rh7AG151300 Rh7BG153000 Rh7CG156500 Rh7DG152300
rosa_wichuraiana	Rw7G012920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	766
AasI	GACNNNNNNGTC	1 cut(s)	28
Acc36I	ACCTGC	1 cut(s)	766
AciI	CCGC	5 cut(s)	16, 170, 254, 465, 910
AcsI	RAATTY	2 cut(s)	58, 427
AcuI	CTGAAG	4 cut(s)	72, 104, 125, 522
AfiI	CCNNNNNNNGG	1 cut(s)	562
AflII	CTTAAG	1 cut(s)	715
AgsI	TTSAA	2 cut(s)	323, 884
AjnI	CCWGG	2 cut(s)	682, 900
AjuI	GAANNNNNNNTTGG	2 cut(s)	487, 519
AluBI	AGCT	7 cut(s)	50, 82, 124, 151, 208, 307, 620
AluI	AGCT	7 cut(s)	50, 82, 124, 151, 208, 307, 620
Alw21I	GWGCWC	3 cut(s)	481, 547, 654
Alw26I	GTCTC	2 cut(s)	36, 771
Alw44I	GTGCAC	1 cut(s)	477
Ama87I	CYCGRG	1 cut(s)	33
ApaLI	GTGCAC	1 cut(s)	477
ApeKI	GCWGC	2 cut(s)	470, 875
ApoI	RAATTY	2 cut(s)	58, 427
Asp700I	GAANNNNTTC	1 cut(s)	352
AsuHPI	GGTGA	2 cut(s)	698, 794
AsuII	TTCGAA	1 cut(s)	8
AvaI	CYCGRG	1 cut(s)	33
BaeGI	GKGCMC	1 cut(s)	481
BbsI	GAAGAC	1 cut(s)	355
Bbv12I	GWGCWC	3 cut(s)	481, 547, 654
BbvI	GCAGC	2 cut(s)	482, 862
BccI	CCATC	1 cut(s)	507
BciT130I	CCWGG	2 cut(s)	684, 902
BclI	TGATCA	1 cut(s)	145
BcoDI	GTCTC	2 cut(s)	36, 771
BfaI	CTAG	1 cut(s)	810
BfrI	CTTAAG	1 cut(s)	715
BfuAI	ACCTGC	1 cut(s)	766
BisI	GCNGC	3 cut(s)	471, 876, 910
BlsI	GCNGC	3 cut(s)	472, 877, 911
Bme1390I	CCNGG	2 cut(s)	684, 902
BmeT110I	CYCGRG	1 cut(s)	33
BmrFI	CCNGG	2 cut(s)	684, 902
BmsI	GCATC	2 cut(s)	241, 694
BpiI	GAAGAC	1 cut(s)	355
Bpu14I	TTCGAA	1 cut(s)	8
BpuEI	CTTGAG	1 cut(s)	329
BsaI	GGTCTC	1 cut(s)	771
BsaJI	CCNNGG	1 cut(s)	900
BsaXI	ACNNNNNCTCC	2 cut(s)	425, 455
Bsc4I	CCNNNNNNNGG	1 cut(s)	562
Bse1I	ACTGG	3 cut(s)	139, 822, 828
Bse3DI	GCAATG	2 cut(s)	714, 859
BseBI	CCWGG	2 cut(s)	684, 902
BseDI	CCNNGG	1 cut(s)	900
BseGI	GGATG	2 cut(s)	178, 499
BseLI	CCNNNNNNNGG	1 cut(s)	562
BseMI	GCAATG	2 cut(s)	714, 859
BseMII	CTCAG	2 cut(s)	560, 834
BseNI	ACTGG	3 cut(s)	139, 822, 828
BseRI	GAGGAG	1 cut(s)	252
BseSI	GKGCMC	1 cut(s)	481
BseXI	GCAGC	2 cut(s)	482, 862
BsgI	GTGCAG	3 cut(s)	298, 651, 794
Bsh1285I	CGRYCG	1 cut(s)	46
BsiEI	CGRYCG	1 cut(s)	46
BsiHKAI	GWGCWC	3 cut(s)	481, 547, 654
BsiHKCI	CYCGRG	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	562
BsmAI	GTCTC	2 cut(s)	36, 771
BsmI	GAATGC	1 cut(s)	508
Bso31I	GGTCTC	1 cut(s)	771
BsoBI	CYCGRG	1 cut(s)	33
Bsp119I	TTCGAA	1 cut(s)	8
Bsp1286I	GDGCHC	3 cut(s)	481, 547, 654
Bsp143I	GATC	2 cut(s)	145, 526
BspACI	CCGC	5 cut(s)	16, 170, 254, 465, 910
BspCNI	CTCAG	2 cut(s)	559, 835
BspMI	ACCTGC	1 cut(s)	766
BspQI	GCTCTTC	1 cut(s)	738
BspT104I	TTCGAA	1 cut(s)	8
BspTI	CTTAAG	1 cut(s)	715
BspTNI	GGTCTC	1 cut(s)	771
BsrDI	GCAATG	2 cut(s)	714, 859
BsrI	ACTGG	3 cut(s)	139, 822, 828
BssECI	CCNNGG	1 cut(s)	900
BssMI	GATC	2 cut(s)	145, 526
Bst2UI	CCWGG	2 cut(s)	684, 902
Bst4CI	ACNGT	1 cut(s)	806
Bst6I	CTCTTC	4 cut(s)	48, 80, 218, 738
BstAFI	CTTAAG	1 cut(s)	715
BstAPI	GCANNNNNTGC	1 cut(s)	476
BstBI	TTCGAA	1 cut(s)	8
BstC8I	GCNNGC	1 cut(s)	18
BstDEI	CTNAG	3 cut(s)	444, 546, 843
BstF5I	GGATG	2 cut(s)	178, 499
BstKTI	GATC	2 cut(s)	148, 529
BstMAI	GTCTC	2 cut(s)	36, 771
BstMBI	GATC	2 cut(s)	145, 526
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 476
BstNI	CCWGG	2 cut(s)	684, 902
BstNSI	RCATGY	1 cut(s)	160
BstSCI	CCNGG	2 cut(s)	682, 900
BstSLI	GKGCMC	1 cut(s)	481
BstV1I	GCAGC	2 cut(s)	482, 862
BstV2I	GAAGAC	1 cut(s)	355
BtsCI	GGATG	2 cut(s)	178, 499
BtsI	GCAGTG	1 cut(s)	286
BtsIMutI	CAGTG	1 cut(s)	286
BveI	ACCTGC	1 cut(s)	766
Cac8I	GCNNGC	1 cut(s)	18
CviAII	CATG	1 cut(s)	157
DdeI	CTNAG	3 cut(s)	444, 546, 843
DpnI	GATC	2 cut(s)	147, 528
DpnII	GATC	2 cut(s)	145, 526
DrdI	GACNNNNNNGTC	1 cut(s)	28
DseDI	GACNNNNNNGTC	1 cut(s)	28
Eam1104I	CTCTTC	4 cut(s)	48, 80, 218, 738
EarI	CTCTTC	4 cut(s)	48, 80, 218, 738
Eco31I	GGTCTC	1 cut(s)	771
Eco57I	CTGAAG	4 cut(s)	72, 104, 125, 522
Eco88I	CYCGRG	1 cut(s)	33
EcoRII	CCWGG	2 cut(s)	682, 900
FaeI	CATG	1 cut(s)	160
FaiI	YATR	4 cut(s)	158, 260, 399, 873
FalI	AAGNNNNNCTT	2 cut(s)	487, 519
FatI	CATG	1 cut(s)	156
FauI	CCCGC	2 cut(s)	9, 458
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	3 cut(s)	471, 876, 910
FokI	GGATG	2 cut(s)	185, 486
Fsp4HI	GCNGC	3 cut(s)	471, 876, 910
FspBI	CTAG	1 cut(s)	810
GluI	GCNGC	3 cut(s)	471, 876, 910
Hin1II	CATG	1 cut(s)	160
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	4 cut(s)	10, 394, 640, 839
HphI	GGTGA	2 cut(s)	698, 794
Hpy166II	GTNNAC	1 cut(s)	479
Hpy188I	TCNGA	4 cut(s)	337, 549, 838, 844
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	1 cut(s)	479
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	2 cut(s)	498, 513
HpyCH4III	ACNGT	1 cut(s)	806
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	9 cut(s)	214, 279, 404, 479, 632, 707, 775, 792, 878
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 476
HpyF3I	CTNAG	3 cut(s)	444, 546, 843
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	1 cut(s)	160
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	2 cut(s)	145, 526
LguI	GCTCTTC	1 cut(s)	738
Lsp1109I	GCAGC	2 cut(s)	482, 862
LweI	GCATC	2 cut(s)	241, 694
MaeI	CTAG	1 cut(s)	810
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	750
MalI	GATC	2 cut(s)	147, 528
MboI	GATC	2 cut(s)	145, 526
MboII	GAAGA	9 cut(s)	65, 97, 118, 140, 235, 360, 737, 755, 825
MhlI	GDGCHC	3 cut(s)	481, 547, 654
MluCI	AATT	5 cut(s)	58, 380, 427, 755, 879
MlyI	GAGTC	1 cut(s)	833
MmeI	TCCRAC	2 cut(s)	214, 267
MroXI	GAANNNNTTC	1 cut(s)	352
MseI	TTAA	6 cut(s)	78, 96, 120, 450, 677, 716
MspA1I	CMGCKG	1 cut(s)	151
MspCI	CTTAAG	1 cut(s)	715
MspR9I	CCNGG	2 cut(s)	684, 902
Mva1269I	GAATGC	1 cut(s)	508
MvaI	CCWGG	2 cut(s)	684, 902
MwoI	GCNNNNNNNGC	2 cut(s)	157, 476
NdeII	GATC	2 cut(s)	145, 526
NlaIII	CATG	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	750
NspI	RCATGY	1 cut(s)	160
NspV	TTCGAA	1 cut(s)	8
PaqCI	CACCTGC	1 cut(s)	766
PciSI	GCTCTTC	1 cut(s)	738
PctI	GAATGC	1 cut(s)	508
PdmI	GAANNNNTTC	1 cut(s)	352
PfeI	GAWTC	3 cut(s)	10, 394, 640
PkrI	GCNGC	3 cut(s)	472, 877, 911
PleI	GAGTC	1 cut(s)	833
PpsI	GAGTC	1 cut(s)	833
Psp6I	CCWGG	2 cut(s)	682, 900
PspGI	CCWGG	2 cut(s)	682, 900
PsrI	GAACNNNNNNTAC	2 cut(s)	182, 214
PvuII	CAGCTG	1 cut(s)	151
SapI	GCTCTTC	1 cut(s)	738
SaqAI	TTAA	6 cut(s)	78, 96, 120, 450, 677, 716
SatI	GCNGC	3 cut(s)	471, 876, 910
Sau3AI	GATC	2 cut(s)	145, 526
SchI	GAGTC	1 cut(s)	833
ScrFI	CCNGG	2 cut(s)	684, 902
SduI	GDGCHC	3 cut(s)	481, 547, 654
SfaNI	GCATC	2 cut(s)	241, 694
SfuI	TTCGAA	1 cut(s)	8
SmlI	CTYRAG	2 cut(s)	308, 715
SmoI	CTYRAG	2 cut(s)	308, 715
Sse9I	AATT	5 cut(s)	58, 380, 427, 755, 879
SsiI	CCGC	5 cut(s)	16, 170, 254, 465, 910
SspI	AATATT	1 cut(s)	332
SspMI	CTAG	1 cut(s)	810
StyD4I	CCNGG	2 cut(s)	682, 900
TaaI	ACNGT	1 cut(s)	806
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	3 cut(s)	8, 42, 356
TaqII	GACCGA	2 cut(s)	60, 852
TasI	AATT	5 cut(s)	58, 380, 427, 755, 879
TauI	GCSGC	1 cut(s)	912
TfiI	GAWTC	3 cut(s)	10, 394, 640
Tru1I	TTAA	6 cut(s)	78, 96, 120, 450, 677, 716
Tru9I	TTAA	6 cut(s)	78, 96, 120, 450, 677, 716
TscAI	CASTG	1 cut(s)	286
TseFI	GTSAC	1 cut(s)	750
TseI	GCWGC	2 cut(s)	470, 875
Tsp45I	GTSAC	1 cut(s)	750
TspDTI	ATGAA	2 cut(s)	236, 660
TspRI	CASTG	1 cut(s)	286
Vha464I	CTTAAG	1 cut(s)	715
VneI	GTGCAC	1 cut(s)	477
XapI	RAATTY	2 cut(s)	58, 427
XceI	RCATGY	1 cut(s)	160
XmnI	GAANNNNTTC	1 cut(s)	352
XspI	CTAG	1 cut(s)	810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.