Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0008135

Physical Location & Seq

Genomic Coordinates Reverse (-)

11775607 .. 11779936

Gene Structure 4330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G114900.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGGGTTTCAGACACGACCCATGAGTAGAAATTTCAGCCAAGATGAAGCGGAAGATGATATTGCTAGCATTTCGCATTTGATTTCGACGCTGAGATCGGCATTTCTGACTTCTGATTTCAACCACGTAGAAGAAAAATTAATAGCCAGAGAAACTAAACTAAAGAGGGAGATTATTAAGCTGAAGAGTGAGAATGAAGTGCTGGAGGAAAAACACCAATTTGATAGGTTGGAAAAGCTTAACCTTGAGGAAGAGCGAAATGCAGCAAATGAGAGATACGAGAAGCTACTGGAGGTGGTGATGAGGGGAGTGGGATCCGATGATAAAGTTACAATGTTGGAGCTCAGGAGGAAGAACGATGAGTTGGAGAGTGAAAAGAAGAAGCTTGAGGCTTTGCTTCATAGTAATTTTACAAGATGGGAGAACAACATTTCAAGGTTAGAGAATGATACAGAGGAATTGATGAACGAAAGGCGTATGGGTTCAAGAAAAATGAGAGGAAAAAGAGGAAATTGTGGAATGATTGTTGATGGTAAAAAGGACAATTGTAGTGTAACCCGTTCCCCTGTCATAGATTTAGAGAATGTGGATGATTTGAATGAAAATGGAAGCGTGGCAGCTAGCGCACCAGTCTCTCCTTTGAGTGATCATTCGCATTCTAAAGGCAATGGACATCAGCAAAATTCAGGTGCTCGCAAATTTTCATCCGGAGGCGCTGGTTTTATTGTCTCTAGTGATGATGATTGTGCACCCAGAGAAAATTCAGGTTTGTCTGGGGTACAAAAGAAACCAAAGTTTCTCAAAAGAAAATGTGCTTCATCTCTGAGCAGTGGTGTTAAGGAGAATGGTGATGACAATTTTGACGAGATGGAGCAACACTCTAAGTTAAACCTTGAACCCTTTGGTTCTAAGGTGAATCACTGCTCAGAAGCAGGTGTTACTTCCACTACTAATGACCCATCAAGTCGTGATCCAGTGAACTTAAGACAAGCTGAAGAAGAAATAGAGCCAGAACAGAAGTTAATGGAATTTATTAGGCCTCTTGCGGAGGCGAGGGTTGATTGTGATAGTGGCAGTTCTAGTTCCAGTTCTTCTGATTCTGAGGATGGCAATAGACGTCAGTTTTTATACTCTTATGCGATGCAAAAGGTCAAAGAAAGAAAGGAATACTTTTCAAGAGATTCTTGTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

398

Amino Acids

44.77

Weight (kDa)

5.46

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008135)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04020 FvH4_5g04020 FvH4_5g04020 FvH4_5g04020
malus_domestica	MD06G1101500.v1.1
prunus_persica	Prupe.5G114900_v2.0.a1 Prupe.5G114900_v2.0.a1 Prupe.5G114900_v2.0.a1 Prupe.5G114900_v2.0.a1 Prupe.5G114900_v2.0.a1
pyrus_communis	pycom06g09670
rosa_chinensis	RchiOBHm_Chr7g0195491
rosa_laevigata	RLG00000004115
rosa_multiflora	Rmu_sc0013420.1_g000001 Rmu_sc0019107.1_g000003 Rmu_sc0042965.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260420
rosa_rugosa	Rorug07G0023900 Rorug07G0023900
rosa_samantha	Rh7AG151300 Rh7BG153000 Rh7CG156500 Rh7DG152300
rosa_wichuraiana	Rw7G012920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	923
AatII	GACGTC	1 cut(s)	1120
Acc36I	ACCTGC	1 cut(s)	923
AccIII	TCCGGA	1 cut(s)	707
AciI	CCGC	2 cut(s)	50, 1046
AclWI	GGATC	3 cut(s)	309, 322, 965
AcsI	RAATTY	5 cut(s)	31, 682, 698, 760, 1028
AcuI	CTGAAG	2 cut(s)	203, 1014
AcyI	GRCGYC	1 cut(s)	1117
AfaI	GTAC	1 cut(s)	780
AflII	CTTAAG	1 cut(s)	982
AgsI	TTSAA	6 cut(s)	121, 435, 486, 598, 896, 1176
AjuI	GAANNNNNNNTTGG	2 cut(s)	347, 379
AluBI	AGCT	7 cut(s)	181, 238, 286, 343, 385, 620, 992
AluI	AGCT	7 cut(s)	181, 238, 286, 343, 385, 620, 992
Alw21I	GWGCWC	3 cut(s)	345, 694, 751
Alw26I	GTCTC	2 cut(s)	637, 733
Alw44I	GTGCAC	1 cut(s)	747
AlwI	GGATC	3 cut(s)	309, 322, 965
Aor13HI	TCCGGA	1 cut(s)	707
AoxI	GGCC	1 cut(s)	1037
ApaLI	GTGCAC	1 cut(s)	747
ApeKI	GCWGC	2 cut(s)	263, 617
ApoI	RAATTY	5 cut(s)	31, 682, 698, 760, 1028
AseI	ATTAAT	1 cut(s)	140
AspLEI	GCGC	2 cut(s)	626, 716
AsuHPI	GGTGA	3 cut(s)	310, 860, 925
AsuNHI	GCTAGC	2 cut(s)	65, 620
BaeGI	GKGCMC	1 cut(s)	751
BamHI	GGATCC	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	345
Bbv12I	GWGCWC	3 cut(s)	345, 694, 751
BbvI	GCAGC	2 cut(s)	275, 629
BccI	CCATC	5 cut(s)	411, 524, 862, 967, 1100
BclI	TGATCA	1 cut(s)	646
BcoDI	GTCTC	2 cut(s)	637, 733
BfaI	CTAG	4 cut(s)	66, 621, 732, 1080
BfoI	RGCGCY	1 cut(s)	717
BfrI	CTTAAG	1 cut(s)	982
BfuAI	ACCTGC	1 cut(s)	923
BisI	GCNGC	2 cut(s)	264, 618
BlsI	GCNGC	2 cut(s)	265, 619
BmiI	GGNNCC	1 cut(s)	316
BmsI	GCATC	1 cut(s)	1131
BmtI	GCTAGC	2 cut(s)	69, 624
BplI	GAGNNNNNCTC	2 cut(s)	863, 895
BpmI	CTGGAG	2 cut(s)	224, 311
Bpu10I	CCTNAGC	1 cut(s)	344
BpuEI	CTTGAG	2 cut(s)	266, 407
BsaAI	YACGTR	1 cut(s)	127
BsaHI	GRCGYC	1 cut(s)	1117
BsaWI	WCCGGW	1 cut(s)	707
Bse1I	ACTGG	4 cut(s)	294, 629, 974, 1086
Bse3DI	GCAATG	1 cut(s)	673
BseAI	TCCGGA	1 cut(s)	707
BseGI	GGATG	3 cut(s)	595, 704, 1111
BseMI	GCAATG	1 cut(s)	673
BseMII	CTCAG	5 cut(s)	83, 358, 815, 939, 1092
BseNI	ACTGG	4 cut(s)	294, 629, 974, 1086
BseSI	GKGCMC	1 cut(s)	751
BseXI	GCAGC	2 cut(s)	275, 629
BshFI	GGCC	1 cut(s)	1039
BsiHKAI	GWGCWC	3 cut(s)	345, 694, 751
BsiSI	CCGG	1 cut(s)	708
BsmAI	GTCTC	2 cut(s)	637, 733
BsmI	GAATGC	1 cut(s)	655
BsnI	GGCC	1 cut(s)	1039
Bsp1286I	GDGCHC	3 cut(s)	345, 694, 751
Bsp13I	TCCGGA	1 cut(s)	707
Bsp143I	GATC	4 cut(s)	95, 314, 646, 970
BspACI	CCGC	2 cut(s)	50, 1046
BspANI	GGCC	1 cut(s)	1039
BspCNI	CTCAG	5 cut(s)	84, 357, 816, 938, 1093
BspEI	TCCGGA	1 cut(s)	707
BspLI	GGNNCC	1 cut(s)	316
BspMI	ACCTGC	1 cut(s)	923
BspOI	GCTAGC	2 cut(s)	69, 624
BspPI	GGATC	3 cut(s)	309, 322, 965
BspQI	GCTCTTC	1 cut(s)	246
BspTI	CTTAAG	1 cut(s)	982
BsrDI	GCAATG	1 cut(s)	673
BsrI	ACTGG	4 cut(s)	294, 629, 974, 1086
BssMI	GATC	4 cut(s)	95, 314, 646, 970
BssNI	GRCGYC	1 cut(s)	1117
Bst6I	CTCTTC	2 cut(s)	179, 246
BstACI	GRCGYC	1 cut(s)	1117
BstAFI	CTTAAG	1 cut(s)	982
BstBAI	YACGTR	1 cut(s)	127
BstC8I	GCNNGC	3 cut(s)	67, 622, 694
BstDEI	CTNAG	7 cut(s)	92, 344, 824, 882, 909, 925, 1101
BstF5I	GGATG	3 cut(s)	595, 704, 1111
BstH2I	RGCGCY	1 cut(s)	717
BstHHI	GCGC	2 cut(s)	626, 716
BstKTI	GATC	4 cut(s)	98, 317, 649, 973
BstMAI	GTCTC	2 cut(s)	637, 733
BstMBI	GATC	4 cut(s)	95, 314, 646, 970
BstMWI	GCNNNNNNNGC	1 cut(s)	623
BstSLI	GKGCMC	1 cut(s)	751
BstV1I	GCAGC	2 cut(s)	275, 629
BstX2I	RGATCY	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	314
BsuRI	GGCC	1 cut(s)	1039
BtgZI	GCGATG	1 cut(s)	1154
BtsCI	GGATG	3 cut(s)	595, 704, 1111
BtsI	GCAGTG	2 cut(s)	835, 919
BtsIMutI	CAGTG	3 cut(s)	835, 919, 981
BveI	ACCTGC	1 cut(s)	923
Cac8I	GCNNGC	3 cut(s)	67, 622, 694
CfoI	GCGC	2 cut(s)	626, 716
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	779
CviAII	CATG	1 cut(s)	22
CviQI	GTAC	1 cut(s)	779
DdeI	CTNAG	7 cut(s)	92, 344, 824, 882, 909, 925, 1101
DpnI	GATC	4 cut(s)	97, 316, 648, 972
DpnII	GATC	4 cut(s)	95, 314, 646, 970
Eam1104I	CTCTTC	2 cut(s)	179, 246
EarI	CTCTTC	2 cut(s)	179, 246
Ecl136II	GAGCTC	1 cut(s)	343
Eco147I	AGGCCT	1 cut(s)	1039
Eco24I	GRGCYC	1 cut(s)	345
Eco53kI	GAGCTC	1 cut(s)	343
Eco57I	CTGAAG	2 cut(s)	203, 1014
EcoICRI	GAGCTC	1 cut(s)	343
EcoT38I	GRGCYC	1 cut(s)	345
FaeI	CATG	1 cut(s)	25
FaiI	YATR	6 cut(s)	23, 402, 479, 572, 1129, 1137
FalI	AAGNNNNNCTT	3 cut(s)	1154, 1186, 1168
FatI	CATG	1 cut(s)	21
FbaI	TGATCA	1 cut(s)	646
Fnu4HI	GCNGC	2 cut(s)	264, 618
FokI	GGATG	3 cut(s)	602, 691, 1118
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	2 cut(s)	264, 618
FspBI	CTAG	4 cut(s)	66, 621, 732, 1080
GlaI	GCGC	2 cut(s)	625, 715
GluI	GCNGC	2 cut(s)	264, 618
GsuI	CTGGAG	2 cut(s)	224, 311
HaeII	RGCGCY	1 cut(s)	717
HaeIII	GGCC	1 cut(s)	1039
HapII	CCGG	1 cut(s)	708
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	2 cut(s)	626, 716
Hin1I	GRCGYC	1 cut(s)	1117
Hin1II	CATG	1 cut(s)	25
Hin6I	GCGC	2 cut(s)	624, 714
HinP1I	GCGC	2 cut(s)	624, 714
HindIII	AAGCTT	2 cut(s)	236, 383
HinfI	GANTC	3 cut(s)	916, 1097, 1181
HpaII	CCGG	1 cut(s)	708
HphI	GGTGA	3 cut(s)	310, 860, 925
Hpy166II	GTNNAC	2 cut(s)	749, 979
Hpy188I	TCNGA	9 cut(s)	12, 108, 115, 319, 825, 928, 1096, 1102, 1193
Hpy188III	TCNNGA	5 cut(s)	346, 486, 708, 968, 1176
Hpy8I	GTNNAC	2 cut(s)	749, 979
Hpy99I	CGWCG	1 cut(s)	91
HpyCH4IV	ACGT	2 cut(s)	126, 1117
HpyCH4V	TGCA	3 cut(s)	263, 749, 1144
HpyF10VI	GCNNNNNNNGC	1 cut(s)	623
HpyF3I	CTNAG	7 cut(s)	92, 344, 824, 882, 909, 925, 1101
HpySE526I	ACGT	2 cut(s)	126, 1117
Hsp92I	GRCGYC	1 cut(s)	1117
Hsp92II	CATG	1 cut(s)	25
HspAI	GCGC	2 cut(s)	624, 714
Kpn2I	TCCGGA	1 cut(s)	707
Ksp22I	TGATCA	1 cut(s)	646
Kzo9I	GATC	4 cut(s)	95, 314, 646, 970
LguI	GCTCTTC	1 cut(s)	246
LmnI	GCTCC	2 cut(s)	340, 871
Lsp1109I	GCAGC	2 cut(s)	275, 629
LweI	GCATC	1 cut(s)	1131
MaeI	CTAG	4 cut(s)	66, 621, 732, 1080
MaeII	ACGT	2 cut(s)	126, 1117
MaeIII	GTNAC	3 cut(s)	328, 553, 937
MalI	GATC	4 cut(s)	97, 316, 648, 972
MboI	GATC	4 cut(s)	95, 314, 646, 970
MboII	GAAGA	9 cut(s)	65, 143, 196, 263, 364, 391, 1007, 1010, 1083
MfeI	CAATTG	1 cut(s)	544
MflI	RGATCY	1 cut(s)	314
MhlI	GDGCHC	3 cut(s)	345, 694, 751
MmeI	TCCRAC	3 cut(s)	210, 318, 345
MroI	TCCGGA	1 cut(s)	707
MseI	TTAA	7 cut(s)	140, 177, 240, 837, 887, 983, 1022
MspCI	CTTAAG	1 cut(s)	982
MspI	CCGG	1 cut(s)	708
MunI	CAATTG	1 cut(s)	544
Mva1269I	GAATGC	1 cut(s)	655
MwoI	GCNNNNNNNGC	1 cut(s)	623
NdeII	GATC	4 cut(s)	95, 314, 646, 970
NheI	GCTAGC	2 cut(s)	65, 620
NlaIII	CATG	1 cut(s)	25
NlaIV	GGNNCC	1 cut(s)	316
PaqCI	CACCTGC	1 cut(s)	923
PceI	AGGCCT	1 cut(s)	1039
PciSI	GCTCTTC	1 cut(s)	246
PctI	GAATGC	1 cut(s)	655
PfeI	GAWTC	3 cut(s)	916, 1097, 1181
PkrI	GCNGC	2 cut(s)	265, 619
Ppu21I	YACGTR	1 cut(s)	127
PshBI	ATTAAT	1 cut(s)	140
Psp124BI	GAGCTC	1 cut(s)	345
PspN4I	GGNNCC	1 cut(s)	316
PsuI	RGATCY	1 cut(s)	314
RsaI	GTAC	1 cut(s)	780
RsaNI	GTAC	1 cut(s)	779
SacI	GAGCTC	1 cut(s)	345
SapI	GCTCTTC	1 cut(s)	246
SaqAI	TTAA	7 cut(s)	140, 177, 240, 837, 887, 983, 1022
SatI	GCNGC	2 cut(s)	264, 618
Sau3AI	GATC	4 cut(s)	95, 314, 646, 970
SduI	GDGCHC	3 cut(s)	345, 694, 751
SfaNI	GCATC	1 cut(s)	1131
SmlI	CTYRAG	3 cut(s)	245, 386, 982
SmoI	CTYRAG	3 cut(s)	245, 386, 982
SseBI	AGGCCT	1 cut(s)	1039
SsiI	CCGC	2 cut(s)	50, 1046
SspMI	CTAG	4 cut(s)	66, 621, 732, 1080
SstI	GAGCTC	1 cut(s)	345
StuI	AGGCCT	1 cut(s)	1039
TaiI	ACGT	2 cut(s)	129, 1120
TaqI	TCGA	1 cut(s)	86
TfiI	GAWTC	3 cut(s)	916, 1097, 1181
Tru1I	TTAA	7 cut(s)	140, 177, 240, 837, 887, 983, 1022
Tru9I	TTAA	7 cut(s)	140, 177, 240, 837, 887, 983, 1022
TscAI	CASTG	3 cut(s)	835, 926, 981
TseI	GCWGC	2 cut(s)	263, 617
TspDTI	ATGAA	7 cut(s)	60, 210, 389, 479, 615, 693, 807
TspRI	CASTG	3 cut(s)	835, 926, 981
Vha464I	CTTAAG	1 cut(s)	982
VneI	GTGCAC	1 cut(s)	747
VspI	ATTAAT	1 cut(s)	140
XapI	RAATTY	5 cut(s)	31, 682, 698, 760, 1028
XspI	CTAG	4 cut(s)	66, 621, 732, 1080
ZraI	GACGTC	1 cut(s)	1118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.