Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0008135

Physical Location & Seq

Genomic Coordinates Forward (+)

11341150 .. 11344797

Gene Structure 3648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG153000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGGGGTTAGGGCACGGCCCAATTTGAGCGGCGAAGCCGAAGACGACACCATTCCGCTCATGATTTCGAAGCTCAAGACGGCGTTTCTCCCCGCCGACTTCCAACGCGCCGAGCGGGCCTTACTCGCCAGAGAATCCAATCTGAGGCGAGAAATCGAGAAGCTGAAGAAGGAAAACGCGAGGCTTCTGGAAGACAACCAATTCCGGGAGCTGGCGATGCTGAGAGTGGAGACTGATTCGAAAGGTGTGATCTTTGAGCAGAGGAGGAAGATCAGGGAGCTGGAGACGCAGAAATTGAAGCTCGAGGCGTTGGTTAAGAGCGAGTATGAAGGATGGAAGGGGCTGATTTCGAAGCTGGAGGGAGATGCGAAGAAATTGAGCGGCGAAAAGGGTGTGGGTTTCAGGAGCAATAATGTTGGTGTGGTGGTCAAATTAGAGAGGGAGTTTGGTGCTAATAATGAAGTTGGAGGCGTGGCGTCGATTCTCAGTGAAGGAAATGGAGGTGTCAAAGTTTCAGGTATTCGGAAATCTTCATCTGAAGATGCTGGTTTGATTGATAGACATGATGAGTGTGCTCCCAGGGAAATCGAGATGCTGTGTGAGAATTCTGAAATACATAAAGGCACTGGATCTTTGGGTTTGACTGGTGTAGAAAGGAAGCTAAGGGTTCTTAAAAGAAAACCAGCGTCATCTTTAAGTGGTAGTGATGATGAAAACGGGGGAGGCAATTTTAAGAAAGATAAAAACTCAGACAGTGAGATGAAGCAACTCCAGAAGTTGAGCATTCAGCCTGATGGTCCTCTTATCAAGCAATGCACAGAAATACTTGATTTTTCTGGTAGTAATGACTCTGAAAATCAAAATTTACCAAGTCATGAGCAAGTGAACTCAAGGCAATCTGAAGAGAAAATTATGGCAGAACAGAAGTCACAACCTTTTCTTAAGGCTCCTATGGAGGTGAGTAGTGATTGTGATAATGATCCTCATGCCGATCTTAGTTCTAGTTGCAGTTCAAGTTCCTCTGACTCTGAAGATGACTGTCTACTACTAGCTGCACTTGATGATATTATGCCAAAAGCCAAAGCAAGAGAGGTAAAGATAAATGACATTTGTACTGCTTTTGCAATAGTGCCGTTTCTGCTTTCTACTTGTAATATTTCCCTTTTCTCTTTTAGTATGATTAATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

396

Amino Acids

43.58

Weight (kDa)

5.35

Isoelectric Point (pI)

44.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008135)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04020 FvH4_5g04020 FvH4_5g04020 FvH4_5g04020
malus_domestica	MD06G1101500.v1.1
prunus_persica	Prupe.5G114900_v2.0.a1 Prupe.5G114900_v2.0.a1 Prupe.5G114900_v2.0.a1 Prupe.5G114900_v2.0.a1 Prupe.5G114900_v2.0.a1
pyrus_communis	pycom06g09670
rosa_chinensis	RchiOBHm_Chr7g0195491
rosa_laevigata	RLG00000004115
rosa_multiflora	Rmu_sc0013420.1_g000001 Rmu_sc0019107.1_g000003 Rmu_sc0042965.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260420
rosa_rugosa	Rorug07G0023900 Rorug07G0023900
rosa_samantha	Rh7AG151300 Rh7BG153000 Rh7CG156500 Rh7DG152300
rosa_wichuraiana	Rw7G012920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	4 cut(s)	30, 58, 115, 381
AccI	GTMKAC	1 cut(s)	1042
AccII	CGCG	2 cut(s)	108, 179
AciI	CCGC	5 cut(s)	30, 56, 93, 115, 381
AclWI	GGATC	2 cut(s)	637, 974
AcsI	RAATTY	2 cut(s)	604, 862
AcuI	CTGAAG	4 cut(s)	185, 558, 921, 1050
AcyI	GRCGYC	1 cut(s)	476
AfaI	GTAC	1 cut(s)	1114
AfiI	CCNNNNNNNGG	3 cut(s)	144, 205, 211
AflII	CTTAAG	1 cut(s)	941
AgsI	TTSAA	2 cut(s)	298, 1014
AjnI	CCWGG	1 cut(s)	578
AluBI	AGCT	8 cut(s)	73, 163, 211, 280, 301, 355, 661, 1052
AluI	AGCT	8 cut(s)	73, 163, 211, 280, 301, 355, 661, 1052
Alw21I	GWGCWC	1 cut(s)	577
Alw26I	GTCTC	2 cut(s)	224, 278
AlwI	GGATC	2 cut(s)	637, 974
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	2 cut(s)	17, 117
ApeKI	GCWGC	1 cut(s)	1052
ApoI	RAATTY	2 cut(s)	604, 862
AseI	ATTAAT	1 cut(s)	1182
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	3 cut(s)	18, 117, 797
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	970
AsuII	TTCGAA	3 cut(s)	68, 239, 350
AvaI	CYCGRG	1 cut(s)	302
AvaII	GGWCC	1 cut(s)	797
BaeGI	GKGCMC	1 cut(s)	16
BbsI	GAAGAC	2 cut(s)	48, 198
Bbv12I	GWGCWC	1 cut(s)	577
BbvI	GCAGC	1 cut(s)	1039
BccI	CCATC	2 cut(s)	327, 788
BceAI	ACGGC	3 cut(s)	32, 96, 1117
BciT130I	CCWGG	1 cut(s)	580
BcnI	CCSGG	1 cut(s)	206
BcoDI	GTCTC	2 cut(s)	224, 278
BfaI	CTAG	2 cut(s)	1002, 1049
BfrI	CTTAAG	1 cut(s)	941
BglI	GCCNNNNNGGC	1 cut(s)	116
BisI	GCNGC	3 cut(s)	31, 382, 1053
BlsI	GCNGC	3 cut(s)	32, 383, 1054
Bme1390I	CCNGG	2 cut(s)	206, 580
Bme18I	GGWCC	1 cut(s)	797
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	3 cut(s)	18, 117, 797
BmiI	GGNNCC	1 cut(s)	948
BmrFI	CCNGG	2 cut(s)	206, 580
BmsI	GCATC	4 cut(s)	207, 355, 532, 582
BpiI	GAAGAC	2 cut(s)	48, 198
BpmI	CTGGAG	3 cut(s)	302, 377, 755
Bpu10I	CCTNAGC	1 cut(s)	662
Bpu14I	TTCGAA	3 cut(s)	68, 239, 350
BpuEI	CTTGAG	2 cut(s)	59, 874
BpuMI	CCSGG	1 cut(s)	206
BsaBI	GATNNNNATC	1 cut(s)	978
BsaHI	GRCGYC	1 cut(s)	476
BsaJI	CCNNGG	2 cut(s)	578, 579
Bsc4I	CCNNNNNNNGG	3 cut(s)	144, 205, 211
Bse1I	ACTGG	2 cut(s)	631, 649
Bse3DI	GCAATG	1 cut(s)	818
Bse8I	GATNNNNATC	1 cut(s)	978
BseBI	CCWGG	1 cut(s)	580
BseDI	CCNNGG	2 cut(s)	578, 579
BseGI	GGATG	1 cut(s)	338
BseJI	GATNNNNATC	1 cut(s)	978
BseLI	CCNNNNNNNGG	3 cut(s)	144, 205, 211
BseMI	GCAATG	1 cut(s)	818
BseMII	CTCAG	4 cut(s)	134, 212, 499, 762
BseNI	ACTGG	2 cut(s)	631, 649
BseRI	GAGGAG	1 cut(s)	277
BseSI	GKGCMC	1 cut(s)	16
BseXI	GCAGC	1 cut(s)	1039
BsgI	GTGCAG	1 cut(s)	1038
Bsh1236I	CGCG	2 cut(s)	108, 179
BshFI	GGCC	2 cut(s)	19, 119
BsiHKAI	GWGCWC	1 cut(s)	577
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	1 cut(s)	205
BslI	CCNNNNNNNGG	3 cut(s)	144, 205, 211
BsmAI	GTCTC	2 cut(s)	224, 278
BsmBI	CGTCTC	1 cut(s)	278
BsmI	GAATGC	1 cut(s)	783
BsnI	GGCC	2 cut(s)	19, 119
BsoBI	CYCGRG	1 cut(s)	302
Bsp119I	TTCGAA	3 cut(s)	68, 239, 350
Bsp1286I	GDGCHC	2 cut(s)	16, 577
Bsp143I	GATC	5 cut(s)	249, 270, 629, 979, 991
BspACI	CCGC	5 cut(s)	30, 56, 93, 115, 381
BspANI	GGCC	2 cut(s)	19, 119
BspCNI	CTCAG	4 cut(s)	135, 213, 498, 761
BspFNI	CGCG	2 cut(s)	108, 179
BspHI	TCATGA	2 cut(s)	60, 874
BspLI	GGNNCC	1 cut(s)	948
BspPI	GGATC	2 cut(s)	637, 974
BspT104I	TTCGAA	3 cut(s)	68, 239, 350
BspTI	CTTAAG	1 cut(s)	941
BsrBI	CCGCTC	4 cut(s)	30, 58, 115, 381
BsrDI	GCAATG	1 cut(s)	818
BsrI	ACTGG	2 cut(s)	631, 649
BssECI	CCNNGG	2 cut(s)	578, 579
BssMI	GATC	5 cut(s)	249, 270, 629, 979, 991
BssNI	GRCGYC	1 cut(s)	476
Bst2UI	CCWGG	1 cut(s)	580
Bst4CI	ACNGT	2 cut(s)	755, 1040
Bst6I	CTCTTC	1 cut(s)	897
BstACI	GRCGYC	1 cut(s)	476
BstAFI	CTTAAG	1 cut(s)	941
BstBI	TTCGAA	3 cut(s)	68, 239, 350
BstC8I	GCNNGC	2 cut(s)	117, 213
BstDEI	CTNAG	6 cut(s)	143, 221, 485, 662, 748, 995
BstF5I	GGATG	1 cut(s)	338
BstFNI	CGCG	2 cut(s)	108, 179
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	5 cut(s)	252, 273, 632, 982, 994
BstMAI	GTCTC	2 cut(s)	224, 278
BstMBI	GATC	5 cut(s)	249, 270, 629, 979, 991
BstMWI	GCNNNNNNNGC	5 cut(s)	116, 125, 217, 286, 1138
BstNI	CCWGG	1 cut(s)	580
BstSCI	CCNGG	2 cut(s)	204, 578
BstSLI	GKGCMC	1 cut(s)	16
BstUI	CGCG	2 cut(s)	108, 179
BstV1I	GCAGC	1 cut(s)	1039
BstV2I	GAAGAC	2 cut(s)	48, 198
BstX2I	RGATCY	1 cut(s)	629
BstYI	RGATCY	1 cut(s)	629
BsuRI	GGCC	2 cut(s)	19, 119
BtgZI	GCGATG	1 cut(s)	230
BtsCI	GGATG	1 cut(s)	338
BtsIMutI	CAGTG	3 cut(s)	493, 624, 760
Cac8I	GCNNGC	2 cut(s)	117, 213
CciI	TCATGA	2 cut(s)	60, 874
CfoI	GCGC	1 cut(s)	110
Cfr13I	GGNCC	3 cut(s)	18, 117, 797
CseI	GACGC	3 cut(s)	295, 465, 675
Csp6I	GTAC	1 cut(s)	1113
CviAII	CATG	4 cut(s)	61, 563, 875, 986
CviQI	GTAC	1 cut(s)	1113
DdeI	CTNAG	6 cut(s)	143, 221, 485, 662, 748, 995
DpnI	GATC	5 cut(s)	251, 272, 631, 981, 993
DpnII	GATC	5 cut(s)	249, 270, 629, 979, 991
Eam1104I	CTCTTC	1 cut(s)	897
EarI	CTCTTC	1 cut(s)	897
Eco47I	GGWCC	1 cut(s)	797
Eco57I	CTGAAG	4 cut(s)	185, 558, 921, 1050
Eco88I	CYCGRG	1 cut(s)	302
EcoRI	GAATTC	1 cut(s)	604
EcoRII	CCWGG	1 cut(s)	578
Esp3I	CGTCTC	1 cut(s)	278
FaeI	CATG	4 cut(s)	64, 566, 878, 989
FatI	CATG	4 cut(s)	60, 562, 874, 985
FauI	CCCGC	2 cut(s)	100, 108
FblI	GTMKAC	1 cut(s)	1042
Fnu4HI	GCNGC	3 cut(s)	31, 382, 1053
FokI	GGATG	1 cut(s)	345
Fsp4HI	GCNGC	3 cut(s)	31, 382, 1053
FspBI	CTAG	2 cut(s)	1002, 1049
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	3 cut(s)	31, 382, 1053
GsuI	CTGGAG	3 cut(s)	302, 377, 755
HaeIII	GGCC	2 cut(s)	19, 119
HapII	CCGG	1 cut(s)	205
HgaI	GACGC	3 cut(s)	295, 465, 675
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	476
Hin1II	CATG	4 cut(s)	64, 566, 878, 989
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	5 cut(s)	134, 236, 481, 848, 1025
HpaII	CCGG	1 cut(s)	205
HphI	GGTGA	1 cut(s)	970
Hpy166II	GTNNAC	2 cut(s)	886, 1043
Hpy188I	TCNGA	9 cut(s)	144, 525, 538, 610, 751, 853, 901, 1024, 1030
Hpy188III	TCNNGA	8 cut(s)	61, 76, 157, 188, 403, 589, 772, 875
Hpy8I	GTNNAC	2 cut(s)	886, 1043
Hpy99I	CGWCG	1 cut(s)	481
HpyAV	CCTTC	4 cut(s)	163, 323, 331, 485
HpyCH4III	ACNGT	2 cut(s)	755, 1040
HpyCH4V	TGCA	4 cut(s)	816, 1008, 1055, 1124
HpyF10VI	GCNNNNNNNGC	5 cut(s)	116, 125, 217, 286, 1138
HpyF3I	CTNAG	6 cut(s)	143, 221, 485, 662, 748, 995
Hsp92I	GRCGYC	1 cut(s)	476
Hsp92II	CATG	4 cut(s)	64, 566, 878, 989
HspAI	GCGC	1 cut(s)	108
Kzo9I	GATC	5 cut(s)	249, 270, 629, 979, 991
LmnI	GCTCC	5 cut(s)	208, 277, 405, 580, 952
Lsp1109I	GCAGC	1 cut(s)	1039
LweI	GCATC	4 cut(s)	207, 355, 532, 582
MaeI	CTAG	2 cut(s)	1002, 1049
MaeIII	GTNAC	1 cut(s)	927
MalI	GATC	5 cut(s)	251, 272, 631, 981, 993
MbiI	CCGCTC	4 cut(s)	30, 58, 115, 381
MboI	GATC	5 cut(s)	249, 270, 629, 979, 991
MboII	GAAGA	9 cut(s)	53, 178, 203, 280, 382, 522, 551, 914, 1043
MflI	RGATCY	1 cut(s)	629
MhlI	GDGCHC	2 cut(s)	16, 577
MlyI	GAGTC	2 cut(s)	842, 1019
MmeI	TCCRAC	2 cut(s)	127, 445
MseI	TTAA	7 cut(s)	315, 672, 695, 732, 942, 1182, 1189
MspCI	CTTAAG	1 cut(s)	941
MspI	CCGG	1 cut(s)	205
MspR9I	CCNGG	2 cut(s)	206, 580
Mva1269I	GAATGC	1 cut(s)	783
MvaI	CCWGG	1 cut(s)	580
MvnI	CGCG	2 cut(s)	108, 179
MwoI	GCNNNNNNNGC	5 cut(s)	116, 125, 217, 286, 1138
NciI	CCSGG	1 cut(s)	206
NdeII	GATC	5 cut(s)	249, 270, 629, 979, 991
NlaIII	CATG	4 cut(s)	64, 566, 878, 989
NlaIV	GGNNCC	1 cut(s)	948
NmeAIII	GCCGAG	1 cut(s)	136
NmuCI	GTSAC	1 cut(s)	927
NspV	TTCGAA	3 cut(s)	68, 239, 350
PaeR7I	CTCGAG	1 cut(s)	302
PagI	TCATGA	2 cut(s)	60, 874
PasI	CCCWGGG	1 cut(s)	579
PctI	GAATGC	1 cut(s)	783
PfeI	GAWTC	3 cut(s)	134, 236, 481
PfoI	TCCNGGA	1 cut(s)	204
PkrI	GCNGC	3 cut(s)	32, 383, 1054
PleI	GAGTC	2 cut(s)	842, 1019
PpsI	GAGTC	2 cut(s)	842, 1019
PshBI	ATTAAT	1 cut(s)	1182
Psp6I	CCWGG	1 cut(s)	578
PspGI	CCWGG	1 cut(s)	578
PspN4I	GGNNCC	1 cut(s)	948
PspPI	GGNCC	3 cut(s)	18, 117, 797
PspXI	VCTCGAGB	1 cut(s)	302
PsuI	RGATCY	1 cut(s)	629
RsaI	GTAC	1 cut(s)	1114
RsaNI	GTAC	1 cut(s)	1113
SaqAI	TTAA	7 cut(s)	315, 672, 695, 732, 942, 1182, 1189
SatI	GCNGC	3 cut(s)	31, 382, 1053
Sau3AI	GATC	5 cut(s)	249, 270, 629, 979, 991
Sau96I	GGNCC	3 cut(s)	18, 117, 797
SchI	GAGTC	2 cut(s)	842, 1019
ScrFI	CCNGG	2 cut(s)	206, 580
SduI	GDGCHC	2 cut(s)	16, 577
SfaNI	GCATC	4 cut(s)	207, 355, 532, 582
Sfr274I	CTCGAG	1 cut(s)	302
SfuI	TTCGAA	3 cut(s)	68, 239, 350
SinI	GGWCC	1 cut(s)	797
SlaI	CTCGAG	1 cut(s)	302
SmlI	CTYRAG	4 cut(s)	74, 302, 889, 941
SmoI	CTYRAG	4 cut(s)	74, 302, 889, 941
SsiI	CCGC	5 cut(s)	30, 56, 93, 115, 381
SspI	AATATT	1 cut(s)	1156
SspMI	CTAG	2 cut(s)	1002, 1049
StyD4I	CCNGG	2 cut(s)	204, 578
TaaI	ACNGT	2 cut(s)	755, 1040
TaqI	TCGA	7 cut(s)	68, 156, 239, 303, 350, 479, 588
TatI	WGTACW	1 cut(s)	1112
TauI	GCSGC	2 cut(s)	33, 384
TfiI	GAWTC	3 cut(s)	134, 236, 481
Tru1I	TTAA	7 cut(s)	315, 672, 695, 732, 942, 1182, 1189
Tru9I	TTAA	7 cut(s)	315, 672, 695, 732, 942, 1182, 1189
TscAI	CASTG	3 cut(s)	493, 631, 760
TseFI	GTSAC	1 cut(s)	927
TseI	GCWGC	1 cut(s)	1052
Tsp45I	GTSAC	1 cut(s)	927
TspDTI	ATGAA	5 cut(s)	342, 474, 522, 726, 776
TspRI	CASTG	3 cut(s)	493, 631, 760
Vha464I	CTTAAG	1 cut(s)	941
VpaK11BI	GGWCC	1 cut(s)	797
VspI	ATTAAT	1 cut(s)	1182
XapI	RAATTY	2 cut(s)	604, 862
XhoI	CTCGAG	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	1042
XspI	CTAG	2 cut(s)	1002, 1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.