FvH4_5g05250

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0010793
Physical Location & Seq
Forward (+)
3062884 .. 3066695
3812 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g05250.t2

Sequence Viewer

Length: 2199 bp
ATGCCGGGAATTGTTGAAGGGGCGGTGAATGAACTGAATGGGAATTCTCAAACTCAAAAGGAAAACTCGGCGATGAATAGATCCCCAAAAATTACTCTTAGTGCGCATAGCCCTCGGAGTATGGGAACTGATGTTCCGGTTGAGGGGGTGGTTGACACCTCAATTGAGCAGCTTTATGAGAATGTGTGCGACATGCAGAGTTCTGATCAGTCACCTTCAAGGCGTAGTTTTCGATCGGATGGGGAGGAGTCTAGGATTGATTCCGAGTTACGCCATCTTGTTGGAGGAGAGATGAGGGAGGTGGAGATCATGGAAGAGGAAGTGCGTTCAAAGCCAGTGGATGATTCTCATAGTGATTCAAGTTCCAAGAAGGAAGATTCACCCATTGGTAGAAAGTCAGGAAAGATTGATAAGCCTCAGTCTCCAAGTACAAAATCTACTTCTCCACCCAACTCAAAGAAAAGTGCTCGCTTGCAGGTGGACTCGGCGACCTCATCTAAATCAGCTGCCAAGGGAAAAAGTCCTGACAAACCTCCCCTCCGTAAGCATAGTGATAAGAATCTACCAAAACCTGTGGGTGCCACTCCTGTTAAGAAATACAGGAAATCACCTGCTGGAGGGTCGAAGGTGCAGACTGGAACTGAGGATTTGGCTGAATCAGGATTAAATCCGGATCTCGGTCCATTTTTGTTAAAGCAAGCAAGGGATTTGATTTCTTCAGGGGATAATCCCCAGAAAGCTCTTGAGTTAGCTCTTAGAGCTACAAAATCGTTTGAACTATGTGCAAATGGGAAACCCTGCTTAGAGCTAGTAATGTGTTTGCATGTTACGTCGGCAATTTATTGTAGCTTAGGCCAGTACAGTGAGGCAATTCCGGTTCTTGAGCGCTCGATTGAGATTTCACCCGCTGAGGAAGGCCAAGATCACGCCCTTGCTAAATTTGCTGGTCACATGCAGTTGGGTGATACTTATGCTATGCTGGGCCAACTTGAAAATTCACTTGCGCATTACACAACAGGATTGGAAATTCAGAAACAAGTTTTGGGAGAAACGGATCCAAGAGTTGGTGAAACTTGTAGATATCTGGCAGAAGCTCATGTTCAAGCATTACAATTTGAGGAGGCTCAAAGGCTTTGCCAGATGGCTCTTGACACTCATAAAGAGAATGGCTCCCCAGCTTCTTTGGAAGAGGCAGCGGATAGGAGACTCATGGGTCTTATATGTGAAACAAAGGGAGATCATGAAGCTGCTCTTGAGCATCTTGTTTTAGCCAGCATGGCTATGGTGGCAAATGGCCAGGAAGTGGAGGTAGCTTCTGTTGACAGCAGCATTGGAGACACATACTTGTCCTTGTCTCGGTATGATGAGGCTGTTTTTGCTTACCAGAAAGCACTCAATGTGTTCAAGACCACTAAAGGAGAGAATCATCCATCTGTTGGTTCAGTTTTCATCCGTCTAGCAGATTTGTATAACAGGACAGGGAAAATTAGGGAATCAGTATCATACTGTGAGAATGCTCTTCGAATTTATGAAAAGCCCATGCCTGGAGTCCCAGCTGAGGAAATGGCGAGTGGTCTCACAGATATTGCAGCTATCTATGAATCAATGAATGAGCTCGAGCAGGCAGTCAAGTTGTTACAGAAGGCGTTAAAAATATACAATGATGCCCCTGGTCAGCAAAGCACAGTAGCAGGGATAGAAGCCCAAATGGGGGTCATGTACTACATGTTGGGGAACTATTCTGAATCTTACGAGTCCTTCAAAAATGCCATCACAAAGCTACGGGCTACTGGAGAAAAGAAATCTGCCTTCTTTGGGATTGTTCTGAACCAAATGGGGCTTGCTTGTGTACAACGTTATGATATAAATGAAGCTCAAGAGTTCTTTGAAGAAGCCAGAACTGTTTTGGAGCAAGAGTGTGGGCCTTATCACCCTGATACACTGGGTGTATATAGCAATCTTGCAGGCACTTATGATGCAGCTGGCAGGTTGGATGATGCAATTGAACTCTTGGAATATGTTGTTGGGATGAGGGAAGAAAAGCTAGGGACAGCTAATCCTGATGTGGATGATGAGAAAAGAAGGTTGACTGAGTTATTGAAAGAAACAGGCAGAGTTCGGAACAGAAAAGCCAGATCACTAGAGAACCTCCTTGATGCAAACTCTCATGGTGTAAACAAAGATGGAATTAAGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001655 GO:0001822 GO:0001889 GO:0001894 GO:0001895 GO:0001947 GO:0002009 GO:0003007 GO:0003143 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003341 GO:0003351 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005929 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007275 GO:0007368 GO:0007369 GO:0007389 GO:0007507 GO:0008150 GO:0009653 GO:0009790 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016043 GO:0022603 GO:0022607 GO:0023051 GO:0023057 GO:0030030 GO:0030031 GO:0030111 GO:0030178 GO:0030323 GO:0030324 GO:0031016 GO:0032501 GO:0032502 GO:0035050 GO:0035239 GO:0035295 GO:0035469 GO:0042592 GO:0042995 GO:0043226 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044782 GO:0045494 GO:0045595 GO:0045596 GO:0045995 GO:0048496 GO:0048513 GO:0048519 GO:0048523 GO:0048562 GO:0048565 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048729 GO:0048731 GO:0048732 GO:0048856 GO:0048871 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051239 GO:0051960 GO:0055123 GO:0060026 GO:0060027 GO:0060249 GO:0060271 GO:0060287 GO:0060429 GO:0060541 GO:0060562 GO:0060828 GO:0060993 GO:0061008 GO:0061371 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071907 GO:0071908 GO:0071909 GO:0071910 GO:0072001 GO:0072189 GO:0072359 GO:0090090 GO:0090175 GO:0090178 GO:0120025 GO:0120031 GO:0120036 GO:1905276 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000095 GO:2000167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

733

Amino Acids

80.06

Weight (kDa)

5.27

Isoelectric Point (pI)

44.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_MalT PF17874 278 - 428 9.4e-06 MalT-like TPR region
TPR_12 PF13424 318 - 377 4.8e-07 Tetratricopeptide repeat
TPR_12 PF13424 362 - 421 7.7e-06 Tetratricopeptide repeat
TPR_NPHP3 PF24885 431 - 567 7.9e-12 Nephrocystin-3 TPR domain
TPR_12 PF13424 437 - 512 6.7e-11 Tetratricopeptide repeat
TPR_12 PF13424 608 - 677 2.1e-11 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010793)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27500 AT1G27500
fragaria_vesca FvH4_5g05250 FvH4_5g05250 FvH4_5g05250
malus_domestica MD06G1174800.v1.1 MD14G1181500.v1.1
prunus_persica Prupe.5G174500_v2.0.a1 Prupe.5G174500_v2.0.a1
pyrus_communis pycom06g15580 pycom14g15090
rosa_chinensis RchiOBHm_Chr7g0193621
rosa_laevigata RLG00000004255
rosa_multiflora Rmu_sc0042944.1_g000001
rosa_roxburghii Rroxscaffold_3G00261950
rosa_rugosa Rorug07G0011200
rosa_samantha Rh7BG137900 Rh7CG141500 Rh7DG139100
rosa_wichuraiana Rw7G011730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 466, 619
AasI GACNNNNNNGTC 1 cut(s) 1212
Acc16I TGCGCA 2 cut(s) 105, 1005
Acc36I ACCTGC 3 cut(s) 466, 619, 1977
AccB1I GGYRCC 1 cut(s) 578
AccB7I CCANNNNNTGG 3 cut(s) 1064, 1303, 1436
AccIII TCCGGA 1 cut(s) 670
AciI CCGC 3 cut(s) 23, 906, 1196
AclI AACGTT 1 cut(s) 1855
AclWI GGATC 4 cut(s) 75, 681, 1049, 1062
AcoI YGGCCR 1 cut(s) 1294
AcsI RAATTY 5 cut(s) 43, 938, 994, 1026, 1524
AcuI CTGAAG 1 cut(s) 702
AdeI CACNNNGTG 1 cut(s) 1946
AfaI GTAC 4 cut(s) 430, 860, 1721, 1851
AfeI AGCGCT 1 cut(s) 887
AflIII ACRYGT 1 cut(s) 1725
AjnI CCWGG 3 cut(s) 1296, 1543, 1669
AjuI GAANNNNNNNTTGG 4 cut(s) 1025, 1057, 2007, 2039
AloI GAACNNNNNNTCC 4 cut(s) 117, 118, 149, 150
Alw21I GWGCWC 2 cut(s) 469, 1617
Alw26I GTCTC 5 cut(s) 426, 1198, 1329, 1359, 1580
AlwI GGATC 4 cut(s) 75, 681, 1049, 1062
Ama87I CYCGRG 1 cut(s) 1616
Aor13HI TCCGGA 1 cut(s) 670
Aor51HI AGCGCT 1 cut(s) 887
AoxI GGCC 5 cut(s) 853, 916, 982, 1294, 1922
ApeKI GCWGC 7 cut(s) 169, 506, 1193, 1247, 1326, 1589, 1979
ApoI RAATTY 5 cut(s) 43, 938, 994, 1026, 1524
AspLEI GCGC 3 cut(s) 106, 888, 1006
AspS9I GGNCC 3 cut(s) 680, 982, 1922
AsuC2I CCSGG 1 cut(s) 6
AsuHPI GGTGA 8 cut(s) 37, 204, 372, 600, 894, 974, 1079, 1922
AsuII TTCGAA 1 cut(s) 1522
AvaI CYCGRG 1 cut(s) 1616
AvaII GGWCC 1 cut(s) 680
BalI TGGCCA 1 cut(s) 1296
BamHI GGATCC 1 cut(s) 1054
BanI GGYRCC 1 cut(s) 578
BanII GRGCYC 1 cut(s) 1617
Bbv12I GWGCWC 2 cut(s) 469, 1617
BbvCI CCTCAGC 2 cut(s) 909, 1557
BbvI GCAGC 7 cut(s) 181, 493, 1205, 1234, 1338, 1601, 1991
BccI CCATC 6 cut(s) 233, 282, 1135, 1438, 1778, 2177
BcgI CGANNNNNNTGC 2 cut(s) 95, 129
BciT130I CCWGG 3 cut(s) 1298, 1545, 1671
BclI TGATCA 1 cut(s) 205
BcnI CCSGG 1 cut(s) 6
BcoDI GTCTC 5 cut(s) 426, 1198, 1329, 1359, 1580
BfaI CTAG 5 cut(s) 252, 809, 1457, 2045, 2141
BfoI RGCGCY 1 cut(s) 889
BfuAI ACCTGC 3 cut(s) 466, 619, 1977
BglI GCCNNNNNGGC 1 cut(s) 1277
BisI GCNGC 7 cut(s) 170, 507, 1194, 1248, 1327, 1590, 1980
BlsI GCNGC 7 cut(s) 171, 508, 1195, 1249, 1328, 1591, 1981
Bme1390I CCNGG 4 cut(s) 6, 1298, 1545, 1671
Bme18I GGWCC 1 cut(s) 680
BmeT110I CYCGRG 1 cut(s) 1616
BmgT120I GGNCC 3 cut(s) 680, 982, 1922
BmiI GGNNCC 3 cut(s) 580, 1056, 1171
BmrFI CCNGG 4 cut(s) 6, 1298, 1545, 1671
BmrI ACTGGG 1 cut(s) 1952
BmsI GCATC 5 cut(s) 1267, 1654, 1966, 1987, 2146
BmuI ACTGGG 1 cut(s) 1952
BplI GAGNNNNNCTC 2 cut(s) 1154, 1186
BpmI CTGGAG 3 cut(s) 636, 1566, 1812
Bpu10I CCTNAGC 3 cut(s) 850, 909, 1557
Bpu14I TTCGAA 1 cut(s) 1522
BpuEI CTTGAG 4 cut(s) 764, 902, 1274, 1860
BpuMI CCSGG 1 cut(s) 6
BsaBI GATNNNNATC 1 cut(s) 558
BsaI GGTCTC 1 cut(s) 1580
BsaJI CCNNGG 3 cut(s) 113, 510, 1669
BsaWI WCCGGW 3 cut(s) 136, 670, 874
BsaXI ACNNNNNCTCC 4 cut(s) 522, 552, 1901, 1931
Bse1I ACTGG 5 cut(s) 335, 640, 856, 1795, 1947
Bse8I GATNNNNATC 1 cut(s) 558
BseAI TCCGGA 1 cut(s) 670
BseBI CCWGG 3 cut(s) 1298, 1545, 1671
BseDI CCNNGG 3 cut(s) 113, 510, 1669
BseGI GGATG 7 cut(s) 244, 346, 1426, 1449, 1999, 2034, 2074
BseJI GATNNNNATC 1 cut(s) 558
BseMII CTCAG 5 cut(s) 431, 633, 900, 1548, 2082
BseNI ACTGG 5 cut(s) 335, 640, 856, 1795, 1947
BseRI GAGGAG 3 cut(s) 260, 300, 1133
BseXI GCAGC 7 cut(s) 181, 493, 1205, 1234, 1338, 1601, 1991
BseYI CCCAGC 3 cut(s) 979, 1174, 1552
BsgI GTGCAG 1 cut(s) 650
Bsh1285I CGRYCG 1 cut(s) 236
BshFI GGCC 5 cut(s) 855, 918, 984, 1296, 1924
BshNI GGYRCC 1 cut(s) 578
BsiEI CGRYCG 1 cut(s) 236
BsiHKAI GWGCWC 2 cut(s) 469, 1617
BsiHKCI CYCGRG 1 cut(s) 1616
BsiSI CCGG 4 cut(s) 5, 137, 671, 875
BslFI GGGAC 2 cut(s) 1535, 2062
BsmAI GTCTC 5 cut(s) 426, 1198, 1329, 1359, 1580
BsmFI GGGAC 2 cut(s) 1535, 2062
BsmI GAATGC 1 cut(s) 1519
BsnI GGCC 5 cut(s) 855, 918, 984, 1296, 1924
Bso31I GGTCTC 1 cut(s) 1580
BsoBI CYCGRG 1 cut(s) 1616
Bsp119I TTCGAA 1 cut(s) 1522
Bsp1286I GDGCHC 2 cut(s) 469, 1617
Bsp13I TCCGGA 1 cut(s) 670
Bsp1407I TGTACA 1 cut(s) 1849
Bsp143I GATC 9 cut(s) 80, 205, 233, 306, 673, 922, 1054, 1237, 2135
BspACI CCGC 3 cut(s) 23, 906, 1196
BspANI GGCC 5 cut(s) 855, 918, 984, 1296, 1924
BspCNI CTCAG 5 cut(s) 430, 634, 901, 1549, 2083
BspEI TCCGGA 1 cut(s) 670
BspHI TCATGA 1 cut(s) 1240
BspLI GGNNCC 3 cut(s) 580, 1056, 1171
BspMI ACCTGC 3 cut(s) 466, 619, 1977
BspPI GGATC 4 cut(s) 75, 681, 1049, 1062
BspQI GCTCTTC 1 cut(s) 1524
BspT104I TTCGAA 1 cut(s) 1522
BspT107I GGYRCC 1 cut(s) 578
BspTNI GGTCTC 1 cut(s) 1580
BsrGI TGTACA 1 cut(s) 1849
BsrI ACTGG 5 cut(s) 335, 640, 856, 1795, 1947
BssECI CCNNGG 3 cut(s) 113, 510, 1669
BssMI GATC 9 cut(s) 80, 205, 233, 306, 673, 922, 1054, 1237, 2135
BssT1I CCWWGG 1 cut(s) 510
Bst2UI CCWGG 3 cut(s) 1298, 1545, 1671
Bst4CI ACNGT 4 cut(s) 863, 1508, 1687, 1903
Bst6I CTCTTC 3 cut(s) 309, 1182, 1524
BstAUI TGTACA 1 cut(s) 1849
BstBI TTCGAA 1 cut(s) 1522
BstC8I GCNNGC 8 cut(s) 469, 473, 699, 1273, 1623, 1842, 1966, 1984
BstDEI CTNAG 9 cut(s) 98, 417, 642, 755, 802, 850, 909, 1557, 2091
BstENI CCTNNNNNAGG 1 cut(s) 615
BstF5I GGATG 7 cut(s) 244, 346, 1426, 1449, 1999, 2034, 2074
BstH2I RGCGCY 1 cut(s) 889
BstHHI GCGC 3 cut(s) 106, 888, 1006
BstKTI GATC 9 cut(s) 83, 208, 236, 309, 676, 925, 1057, 1240, 2138
BstMAI GTCTC 5 cut(s) 426, 1198, 1329, 1359, 1580
BstMBI GATC 9 cut(s) 80, 205, 233, 306, 673, 922, 1054, 1237, 2135
BstMCI CGRYCG 1 cut(s) 236
BstMWI GCNNNNNNNGC 6 cut(s) 331, 758, 941, 1277, 1286, 1376
BstNI CCWGG 3 cut(s) 1298, 1545, 1671
BstNSI RCATGY 4 cut(s) 196, 827, 955, 1729
BstSCI CCNGG 4 cut(s) 4, 1296, 1543, 1669
BstV1I GCAGC 7 cut(s) 181, 493, 1205, 1234, 1338, 1601, 1991
BstX2I RGATCY 3 cut(s) 80, 673, 1054
BstXI CCANNNNNNTGG 1 cut(s) 281
BstYI RGATCY 3 cut(s) 80, 673, 1054
BsuRI GGCC 5 cut(s) 855, 918, 984, 1296, 1924
BtgZI GCGATG 1 cut(s) 86
BtsCI GGATG 7 cut(s) 244, 346, 1426, 1449, 1999, 2034, 2074
BtsIMutI CAGTG 3 cut(s) 342, 868, 1940
BveI ACCTGC 3 cut(s) 466, 619, 1977
Cac8I GCNNGC 8 cut(s) 469, 473, 699, 1273, 1623, 1842, 1966, 1984
CciI TCATGA 1 cut(s) 1240
CfoI GCGC 3 cut(s) 106, 888, 1006
Cfr13I GGNCC 3 cut(s) 680, 982, 1922
Csp6I GTAC 4 cut(s) 429, 859, 1720, 1850
CspCI CAANNNNNGTGG 4 cut(s) 318, 353, 555, 590
CviQI GTAC 4 cut(s) 429, 859, 1720, 1850
DdeI CTNAG 9 cut(s) 98, 417, 642, 755, 802, 850, 909, 1557, 2091
DpnI GATC 9 cut(s) 82, 207, 235, 308, 675, 924, 1056, 1239, 2137
DpnII GATC 9 cut(s) 80, 205, 233, 306, 673, 922, 1054, 1237, 2135
DraIII CACNNNGTG 1 cut(s) 1946
DrdI GACNNNNNNGTC 1 cut(s) 1212
DseDI GACNNNNNNGTC 1 cut(s) 1212
EaeI YGGCCR 1 cut(s) 1294
Eam1104I CTCTTC 3 cut(s) 309, 1182, 1524
EarI CTCTTC 3 cut(s) 309, 1182, 1524
Ecl136II GAGCTC 1 cut(s) 1615
Eco130I CCWWGG 1 cut(s) 510
Eco24I GRGCYC 1 cut(s) 1617
Eco31I GGTCTC 1 cut(s) 1580
Eco32I GATATC 1 cut(s) 1082
Eco47I GGWCC 1 cut(s) 680
Eco47III AGCGCT 1 cut(s) 887
Eco53kI GAGCTC 1 cut(s) 1615
Eco57I CTGAAG 1 cut(s) 702
Eco88I CYCGRG 1 cut(s) 1616
EcoICRI GAGCTC 1 cut(s) 1615
EcoNI CCTNNNNNAGG 1 cut(s) 615
EcoRI GAATTC 1 cut(s) 43
EcoRII CCWGG 3 cut(s) 1296, 1543, 1669
EcoRV GATATC 1 cut(s) 1082
EcoT14I CCWWGG 1 cut(s) 510
EcoT38I GRGCYC 1 cut(s) 1617
ErhI CCWWGG 1 cut(s) 510
FalI AAGNNNNNCTT 2 cut(s) 1236, 1268
FaqI GGGAC 2 cut(s) 1535, 2062
FauI CCCGC 1 cut(s) 913
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 7 cut(s) 170, 507, 1194, 1248, 1327, 1590, 1980
FokI GGATG 7 cut(s) 251, 353, 1413, 1436, 2006, 2041, 2081
FriOI GRGCYC 1 cut(s) 1617
Fsp4HI GCNGC 7 cut(s) 170, 507, 1194, 1248, 1327, 1590, 1980
FspAI RTGCGCAY 1 cut(s) 105
FspBI CTAG 5 cut(s) 252, 809, 1457, 2045, 2141
FspI TGCGCA 2 cut(s) 105, 1005
GlaI GCGC 3 cut(s) 105, 887, 1005
GluI GCNGC 7 cut(s) 170, 507, 1194, 1248, 1327, 1590, 1980
GsaI CCCAGC 3 cut(s) 983, 1178, 1556
GsuI CTGGAG 3 cut(s) 636, 1566, 1812
HaeII RGCGCY 1 cut(s) 889
HaeIII GGCC 5 cut(s) 855, 918, 984, 1296, 1924
HapII CCGG 4 cut(s) 5, 137, 671, 875
HhaI GCGC 3 cut(s) 106, 888, 1006
Hin6I GCGC 3 cut(s) 104, 886, 1004
HinP1I GCGC 3 cut(s) 104, 886, 1004
HincII GTYRAC 3 cut(s) 154, 1321, 2088
HindII GTYRAC 3 cut(s) 154, 1321, 2088
HpaII CCGG 4 cut(s) 5, 137, 671, 875
HphI GGTGA 8 cut(s) 37, 204, 372, 600, 894, 974, 1079, 1922
Hpy166II GTNNAC 6 cut(s) 154, 481, 1321, 1850, 2088, 2176
Hpy188I TCNGA 8 cut(s) 117, 205, 238, 265, 1032, 1744, 1827, 2121
Hpy8I GTNNAC 6 cut(s) 154, 481, 1321, 1850, 2088, 2176
Hpy99I CGWCG 1 cut(s) 835
HpyAV CCTTC 9 cut(s) 11, 225, 364, 619, 908, 1636, 1768, 1819, 2076
HpyCH4III ACNGT 4 cut(s) 863, 1508, 1687, 1903
HpyCH4IV ACGT 2 cut(s) 830, 1855
HpyF10VI GCNNNNNNNGC 6 cut(s) 331, 758, 941, 1277, 1286, 1376
HpyF3I CTNAG 9 cut(s) 98, 417, 642, 755, 802, 850, 909, 1557, 2091
HpySE526I ACGT 2 cut(s) 830, 1855
HspAI GCGC 3 cut(s) 104, 886, 1004
Kpn2I TCCGGA 1 cut(s) 670
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 9 cut(s) 80, 205, 233, 306, 673, 922, 1054, 1237, 2135
LguI GCTCTTC 1 cut(s) 1524
LmnI GCTCC 2 cut(s) 1175, 1909
Lsp1109I GCAGC 7 cut(s) 181, 493, 1205, 1234, 1338, 1601, 1991
LweI GCATC 5 cut(s) 1267, 1654, 1966, 1987, 2146
MaeI CTAG 5 cut(s) 252, 809, 1457, 2045, 2141
MaeII ACGT 2 cut(s) 830, 1855
MaeIII GTNAC 5 cut(s) 210, 267, 826, 947, 1635
MalI GATC 9 cut(s) 82, 207, 235, 308, 675, 924, 1056, 1239, 2137
MboI GATC 9 cut(s) 80, 205, 233, 306, 673, 922, 1054, 1237, 2135
MboII GAAGA 7 cut(s) 326, 386, 708, 1199, 1511, 1901, 2048
MfeI CAATTG 2 cut(s) 162, 2001
MflI RGATCY 3 cut(s) 80, 673, 1054
MhlI GDGCHC 2 cut(s) 469, 1617
MlsI TGGCCA 1 cut(s) 1296
MluNI TGGCCA 1 cut(s) 1296
MlyI GAGTC 5 cut(s) 257, 476, 1200, 1557, 1763
MmeI TCCRAC 2 cut(s) 262, 1971
Mox20I TGGCCA 1 cut(s) 1296
MroI TCCGGA 1 cut(s) 670
MscI TGGCCA 1 cut(s) 1296
MseI TTAA 5 cut(s) 591, 665, 692, 1649, 2190
MslI CAYNNNNRTG 1 cut(s) 1280
Msp20I TGGCCA 1 cut(s) 1296
MspA1I CMGCKG 5 cut(s) 506, 908, 1196, 1556, 1982
MspI CCGG 4 cut(s) 5, 137, 671, 875
MspR9I CCNGG 4 cut(s) 6, 1298, 1545, 1671
MunI CAATTG 2 cut(s) 162, 2001
Mva1269I GAATGC 1 cut(s) 1519
MvaI CCWGG 3 cut(s) 1298, 1545, 1671
MwoI GCNNNNNNNGC 6 cut(s) 331, 758, 941, 1277, 1286, 1376
NciI CCSGG 1 cut(s) 6
NdeII GATC 9 cut(s) 80, 205, 233, 306, 673, 922, 1054, 1237, 2135
NlaIV GGNNCC 3 cut(s) 580, 1056, 1171
NmeAIII GCCGAG 2 cut(s) 47, 464
NmuCI GTSAC 2 cut(s) 210, 947
NsbI TGCGCA 2 cut(s) 105, 1005
NspI RCATGY 4 cut(s) 196, 827, 955, 1729
NspV TTCGAA 1 cut(s) 1522
PaeR7I CTCGAG 1 cut(s) 1616
PagI TCATGA 1 cut(s) 1240
PaqCI CACCTGC 2 cut(s) 466, 619
PciI ACATGT 1 cut(s) 1725
PciSI GCTCTTC 1 cut(s) 1524
PctI GAATGC 1 cut(s) 1519
PflMI CCANNNNNTGG 3 cut(s) 1064, 1303, 1436
PkrI GCNGC 7 cut(s) 171, 508, 1195, 1249, 1328, 1591, 1981
Ple19I CGATCG 1 cut(s) 236
PleI GAGTC 5 cut(s) 256, 476, 1200, 1556, 1762
PpsI GAGTC 5 cut(s) 256, 476, 1200, 1556, 1762
PscI ACATGT 1 cut(s) 1725
Psp124BI GAGCTC 1 cut(s) 1617
Psp1406I AACGTT 1 cut(s) 1855
Psp6I CCWGG 3 cut(s) 1296, 1543, 1669
PspFI CCCAGC 3 cut(s) 979, 1174, 1552
PspGI CCWGG 3 cut(s) 1296, 1543, 1669
PspN4I GGNNCC 3 cut(s) 580, 1056, 1171
PspPI GGNCC 3 cut(s) 680, 982, 1922
PspXI VCTCGAGB 1 cut(s) 1616
PsuI RGATCY 3 cut(s) 80, 673, 1054
PvuI CGATCG 1 cut(s) 236
PvuII CAGCTG 3 cut(s) 506, 1556, 1982
RsaI GTAC 4 cut(s) 430, 860, 1721, 1851
RsaNI GTAC 4 cut(s) 429, 859, 1720, 1850
RseI CAYNNNNRTG 1 cut(s) 1280
SacI GAGCTC 1 cut(s) 1617
SapI GCTCTTC 1 cut(s) 1524
SaqAI TTAA 5 cut(s) 591, 665, 692, 1649, 2190
SatI GCNGC 7 cut(s) 170, 507, 1194, 1248, 1327, 1590, 1980
Sau3AI GATC 9 cut(s) 80, 205, 233, 306, 673, 922, 1054, 1237, 2135
Sau96I GGNCC 3 cut(s) 680, 982, 1922
SchI GAGTC 5 cut(s) 257, 476, 1200, 1557, 1763
ScrFI CCNGG 4 cut(s) 6, 1298, 1545, 1671
SduI GDGCHC 2 cut(s) 469, 1617
SfaNI GCATC 5 cut(s) 1267, 1654, 1966, 1987, 2146
Sfr274I CTCGAG 1 cut(s) 1616
SfuI TTCGAA 1 cut(s) 1522
SinI GGWCC 1 cut(s) 680
SlaI CTCGAG 1 cut(s) 1616
SmiMI CAYNNNNRTG 1 cut(s) 1280
SmlI CTYRAG 5 cut(s) 743, 881, 1253, 1616, 1875
SmoI CTYRAG 5 cut(s) 743, 881, 1253, 1616, 1875
SsiI CCGC 3 cut(s) 23, 906, 1196
SspMI CTAG 5 cut(s) 252, 809, 1457, 2045, 2141
SstI GAGCTC 1 cut(s) 1617
StyD4I CCNGG 4 cut(s) 4, 1296, 1543, 1669
StyI CCWWGG 1 cut(s) 510
TaaI ACNGT 4 cut(s) 863, 1508, 1687, 1903
TaiI ACGT 2 cut(s) 833, 1858
TaqI TCGA 5 cut(s) 232, 623, 890, 1522, 1617
TaqII GACCGA 1 cut(s) 668
TatI WGTACW 4 cut(s) 428, 858, 1719, 1849
Tru1I TTAA 5 cut(s) 591, 665, 692, 1649, 2190
Tru9I TTAA 5 cut(s) 591, 665, 692, 1649, 2190
TscAI CASTG 3 cut(s) 342, 868, 1947
TseFI GTSAC 2 cut(s) 210, 947
TseI GCWGC 7 cut(s) 169, 506, 1193, 1247, 1326, 1589, 1979
Tsp45I GTSAC 2 cut(s) 210, 947
TspDTI ATGAA 8 cut(s) 45, 89, 1257, 1438, 1545, 1614, 1622, 1884
TspGWI ACGGA 3 cut(s) 530, 1067, 1442
TspRI CASTG 3 cut(s) 342, 868, 1947
Van91I CCANNNNNTGG 3 cut(s) 1064, 1303, 1436
VpaK11BI GGWCC 1 cut(s) 680
XagI CCTNNNNNAGG 1 cut(s) 615
XapI RAATTY 5 cut(s) 43, 938, 994, 1026, 1524
XceI RCATGY 4 cut(s) 196, 827, 955, 1729
XcmI CCANNNNNNNNNTGG 2 cut(s) 1279, 1903
XhoI CTCGAG 1 cut(s) 1616
XspI CTAG 5 cut(s) 252, 809, 1457, 2045, 2141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.