pycom14g15090

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0010793
Physical Location & Seq
Reverse (-)
17797638 .. 17800166
2529 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g15090.1

Sequence Viewer

Length: 2193 bp
ATGCCTGGAATTGTTGATGAGGTGGTAAATGAATCACATGAAAATTCCACGCCAAGTAAGGAAAATACAGCTCTGAATGGATCCCCAAAGAGTACTCTGAATCAGCAAAGCCCCCGGAGTAGAGGACATGATCGTCCAGTTGATGGGGTGGTTGACACCTCAATTGAGCAGCTTTATGAGAATGTGTGTGATATGCAGAGTTCTGATCAGTCACCTTCAAGGCGTAGTTTTCGATCGGATGGTGATGAGTCGAGGATTGATTCAGAGTTACGCCATCTTGTTGGAGGAGAGATGAGAGAGGTGGAGATAATGGAAGAGGAAGTACTAGAAAAGCCAGCGTATGATTCTCGTAGTGATTCAAGTTCTAAGAAAGGTTTGTCCTCAGATAGAAAATCAGGGAAGATGGTTAAATCTGCAAGTGCAAAATCCGTTTCTTCTGGGAACTCAAAGAAAGTTGCTCAATTGCAGGTCGAGACTGAAACTTCATCAAAATCAGTTGTGAAGGGAAGAAGTCCTGACAAACCTCCAATTCCTAGCAATAAAAATTTCCAAAAACAGCATCTGGGACCCACTTCCGTGAAGAAAGGCAGGAATTCATCTGTGGCAGGGTCAAAGTTGCAGAATGGAACTGAGGATTTGGCTGAATCAGGGTTAAATAATCCCGATCTTGGGCCATTTTTGCTTAAGCAAGCAAGAGATTTGATTTCCTCAGGGGATAATCCCCAGAAAGCTCTTGAATTAGCTCTTCGAGCTGGAAAATCATTTGAATTATTTGCAAATGGGAAACCTTGTTTAGAGCTGGTAATGTGCCTTCACGTCACGGCAGCAATTTACTGTAACTTAGGCCAGTATCATGAGGCAATTCCTGTTCTCGAACATTCAATTGAGCTTTCAGCTATTGAGGAAGGCCAAAATCATGCCCTTGCTAAATTTGCTGGTCATATGCAGTTGGGTGATACTTATGCTATGCTGGGCCAACTTGAGAATTCAATTATGCATTACTCAACTGGATTGGAAATCCAGAAACAAGTTTTGGGAGAAACAGATGTAAGAGTTGGTGAGACTTGTCGGTATTTGGCTGAAGCTCATGTCCAAGCATTGCAATTTGATGAAGCTCAGAGGCTTTGCCAGATGGCTCTCGACAGTCATAAAGAGAATGGTTCCCCATCTTCTCTGGAAGAGGCTGCAGATAGGAGATTGATGGGTCTTATATGTGAAACGAAGGGTGATCACGAAGCTGCTCTCGAGCACCTTGTGTTAGCCAGCATGGCCATGGTGGCAAATGGCCAGGAAGTGGAGGTGGCTTCTGTTGATTGCAGCATTGGAGACACATACTTGTCCTTGTCTCGGTATGATGAAGCTGCTTTTGCTTATCAGAAGGCACTCACTGTGTTCAAGACCACCAAAGGAGAGAATCATCCAGCTGTTGGTTCAGTCTTCATCCGCTTGGCTGATTTGTATAACAGGACTGGGAAAATTCGAGAGTCAAAATCATATTGTGAGAATGCCCTTCGAATTTATGAAAAGCCCATGCATGGAGTCCCCCCTGAGGAGATGGCAAGTGGTCTCACAGATGTTTCTGCTATCTATGAATCGATGAATGACCTTGAGCAGGCGGTCAAGTTGCTACAGAAGGCATTAAAGATATACAATGATGCCCCTGGTCAACAGAGCACCATAGCCGGGATTGAAGCCCAAATGGGTGTCATGTACTACATGCTGGGGAGTTATTCTGAATCTTATGACTCCTTCAAGAGTGCCATTTCAAAGCTCCGTGCAACTGGAGAAAAGAAAACTGCTTTTTTCGGGATTGTTCTTAACCAAATAGGGCTTGCTTGCGTGCAACGTTATTCCATAAATGAGGCTCAAGAATGCTTCGAAGAAGCCAGGACTATTTTGGAACATGAGTGCGGACCGTACCACCCTGACACACTCGGGGTGTATAGCAATCTTGCTGGCACTTATGATGCAACTGGAAGGTTGGAGGATGCCATCGAAATCTTGGAGTACGTTGTTGAGATGAGGGAAGAGAAACTTGGGACAGCAAATCCCGACGTGGATGATGAGAAAAGAAGGTTGGCTGAGTTATTGAAAGAAGCAGGCAGGGATCGGAGCAGAAAAACCAGATCACTAGAGAACCTCCTTGATTCCAACTCCCGCGGTATAAACAATGATGGAATTACGGTATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001655 GO:0001822 GO:0001889 GO:0001894 GO:0001895 GO:0001947 GO:0002009 GO:0003007 GO:0003143 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003341 GO:0003351 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005929 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007275 GO:0007368 GO:0007369 GO:0007389 GO:0007507 GO:0008150 GO:0009653 GO:0009790 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016043 GO:0022603 GO:0022607 GO:0023051 GO:0023057 GO:0030030 GO:0030031 GO:0030111 GO:0030178 GO:0030323 GO:0030324 GO:0031016 GO:0032501 GO:0032502 GO:0035050 GO:0035239 GO:0035295 GO:0035469 GO:0042592 GO:0042995 GO:0043226 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044782 GO:0045494 GO:0045595 GO:0045596 GO:0045995 GO:0048496 GO:0048513 GO:0048519 GO:0048523 GO:0048562 GO:0048565 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048729 GO:0048731 GO:0048732 GO:0048856 GO:0048871 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051239 GO:0051960 GO:0055123 GO:0060026 GO:0060027 GO:0060249 GO:0060271 GO:0060287 GO:0060429 GO:0060541 GO:0060562 GO:0060828 GO:0060993 GO:0061008 GO:0061371 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071907 GO:0071908 GO:0071909 GO:0071910 GO:0072001 GO:0072189 GO:0072359 GO:0090090 GO:0090175 GO:0090178 GO:0120025 GO:0120031 GO:0120036 GO:1905276 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000095 GO:2000167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

731

Amino Acids

80.1

Weight (kDa)

5.22

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_12 PF13424 359 - 418 1.5e-06 Tetratricopeptide repeat
TPR_NPHP3 PF24885 428 - 563 1.3e-10 Nephrocystin-3 TPR domain
TPR_12 PF13424 434 - 509 9.1e-10 Tetratricopeptide repeat
TPR_12 PF13424 605 - 677 1e-10 Tetratricopeptide repeat
TPR_10 PF13374 644 - 685 3.3e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010793)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27500 AT1G27500
fragaria_vesca FvH4_5g05250 FvH4_5g05250 FvH4_5g05250
malus_domestica MD06G1174800.v1.1 MD14G1181500.v1.1
prunus_persica Prupe.5G174500_v2.0.a1 Prupe.5G174500_v2.0.a1
pyrus_communis pycom06g15580 pycom14g15090
rosa_chinensis RchiOBHm_Chr7g0193621
rosa_laevigata RLG00000004255
rosa_multiflora Rmu_sc0042944.1_g000001
rosa_roxburghii Rroxscaffold_3G00261950
rosa_rugosa Rorug07G0011200
rosa_samantha Rh7BG137900 Rh7CG141500 Rh7DG139100
rosa_wichuraiana Rw7G011730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 132
Acc36I ACCTGC 1 cut(s) 457
AccB7I CCANNNNNTGG 3 cut(s) 143, 1294, 1427
AccII CGCG 1 cut(s) 2160
AciI CCGC 5 cut(s) 1444, 1616, 1911, 2158, 2160
AclI AACGTT 1 cut(s) 1846
AclWI GGATC 3 cut(s) 75, 88, 2115
AcoI YGGCCR 2 cut(s) 1269, 1285
AcsI RAATTY 7 cut(s) 43, 544, 592, 929, 985, 1476, 1515
AcuI CTGAAG 1 cut(s) 1101
AdeI CACNNNGTG 1 cut(s) 1255
AfaI GTAC 5 cut(s) 94, 324, 1712, 1919, 2009
AflII CTTAAG 1 cut(s) 683
AjiI CACGTC 2 cut(s) 817, 2056
AjnI CCWGG 4 cut(s) 4, 1287, 1660, 1886
AjuI GAANNNNNNNTTGG 6 cut(s) 1016, 1048, 2019, 2051, 2060, 2092
AleI CACNNNNGTG 1 cut(s) 575
Alw21I GWGCWC 2 cut(s) 1251, 1676
Alw26I GTCTC 5 cut(s) 467, 1055, 1320, 1350, 1571
AlwI GGATC 3 cut(s) 75, 88, 2115
AlwNI CAGNNNCTG 1 cut(s) 562
Ama87I CYCGRG 2 cut(s) 1244, 1934
AoxI GGCC 6 cut(s) 671, 844, 907, 973, 1269, 1285
ApeKI GCWGC 6 cut(s) 169, 824, 1184, 1238, 1317, 1361
ApoI RAATTY 7 cut(s) 43, 544, 592, 929, 985, 1476, 1515
AspS9I GGNCC 4 cut(s) 566, 671, 973, 1913
AsuC2I CCSGG 2 cut(s) 115, 1684
AsuHPI GGTGA 5 cut(s) 204, 254, 965, 1070, 1238
AsuII TTCGAA 2 cut(s) 1513, 1878
AvaI CYCGRG 2 cut(s) 1244, 1934
AvaII GGWCC 2 cut(s) 566, 1913
AxyI CCTNAGG 2 cut(s) 709, 1548
BalI TGGCCA 2 cut(s) 1271, 1287
BamHI GGATCC 1 cut(s) 80
BarI GAAGNNNNNNTAC 4 cut(s) 306, 338, 795, 827
BbsI GAAGAC 1 cut(s) 1429
Bbv12I GWGCWC 2 cut(s) 1251, 1676
BbvI GCAGC 6 cut(s) 181, 836, 1171, 1225, 1329, 1348
BceAI ACGGC 1 cut(s) 837
BciT130I CCWGG 4 cut(s) 6, 1289, 1662, 1888
BclI TGATCA 2 cut(s) 205, 1228
BcnI CCSGG 2 cut(s) 115, 1684
BcoDI GTCTC 5 cut(s) 467, 1055, 1320, 1350, 1571
BfaI CTAG 3 cut(s) 326, 534, 2132
BfmI CTRYAG 2 cut(s) 1185, 1628
BfrI CTTAAG 1 cut(s) 683
BfuAI ACCTGC 1 cut(s) 457
BglI GCCNNNNNGGC 2 cut(s) 1268, 1277
BisI GCNGC 6 cut(s) 170, 825, 1185, 1239, 1318, 1362
BlsI GCNGC 6 cut(s) 171, 826, 1186, 1240, 1319, 1363
BmcAI AGTACT 2 cut(s) 94, 324
Bme1390I CCNGG 6 cut(s) 6, 115, 1289, 1662, 1684, 1888
Bme18I GGWCC 2 cut(s) 566, 1913
BmeT110I CYCGRG 2 cut(s) 1244, 1934
BmgBI CACGTC 2 cut(s) 817, 2056
BmgT120I GGNCC 4 cut(s) 566, 671, 973, 1913
BmiI GGNNCC 4 cut(s) 82, 567, 568, 1162
BmrFI CCNGG 6 cut(s) 6, 115, 1289, 1662, 1684, 1888
BmrI ACTGGG 1 cut(s) 1479
BmsI GCATC 4 cut(s) 568, 1645, 1957, 1978
BmuI ACTGGG 1 cut(s) 1479
BpiI GAAGAC 1 cut(s) 1429
BpmI CTGGAG 1 cut(s) 1803
Bpu14I TTCGAA 2 cut(s) 1513, 1878
BpuEI CTTGAG 3 cut(s) 1001, 1628, 1851
BpuMI CCSGG 2 cut(s) 115, 1684
Bsa29I ATCGAT 1 cut(s) 1595
BsaI GGTCTC 1 cut(s) 1571
BsaJI CCNNGG 4 cut(s) 113, 1272, 1660, 2158
Bse1I ACTGG 6 cut(s) 137, 847, 1012, 1474, 1786, 1978
Bse21I CCTNAGG 2 cut(s) 709, 1548
Bse3DI GCAATG 1 cut(s) 1097
BseBI CCWGG 4 cut(s) 6, 1289, 1662, 1888
BseCI ATCGAT 1 cut(s) 1595
BseDI CCNNGG 4 cut(s) 113, 1272, 1660, 2158
BseGI GGATG 5 cut(s) 244, 1417, 1440, 1993, 2065
BseMI GCAATG 1 cut(s) 1097
BseMII CTCAG 6 cut(s) 396, 621, 723, 1130, 1539, 2073
BseNI ACTGG 6 cut(s) 137, 847, 1012, 1474, 1786, 1978
BseRI GAGGAG 2 cut(s) 300, 1565
BseXI GCAGC 6 cut(s) 181, 836, 1171, 1225, 1329, 1348
BseYI CCCAGC 2 cut(s) 970, 1720
Bsh1236I CGCG 1 cut(s) 2160
Bsh1285I CGRYCG 1 cut(s) 236
BshFI GGCC 6 cut(s) 673, 846, 909, 975, 1271, 1287
BshVI ATCGAT 1 cut(s) 1595
BsiEI CGRYCG 1 cut(s) 236
BsiHKAI GWGCWC 2 cut(s) 1251, 1676
BsiHKCI CYCGRG 2 cut(s) 1244, 1934
BsiSI CCGG 2 cut(s) 115, 1683
BslFI GGGAC 3 cut(s) 579, 1526, 2053
BsmAI GTCTC 5 cut(s) 467, 1055, 1320, 1350, 1571
BsmFI GGGAC 3 cut(s) 579, 1526, 2053
BsmI GAATGC 2 cut(s) 1510, 1877
BsnI GGCC 6 cut(s) 673, 846, 909, 975, 1271, 1287
Bso31I GGTCTC 1 cut(s) 1571
BsoBI CYCGRG 2 cut(s) 1244, 1934
Bsp119I TTCGAA 2 cut(s) 1513, 1878
Bsp1286I GDGCHC 2 cut(s) 1251, 1676
Bsp143I GATC 8 cut(s) 80, 130, 205, 233, 664, 1228, 2107, 2126
Bsp19I CCATGG 1 cut(s) 1272
BspACI CCGC 5 cut(s) 1444, 1616, 1911, 2158, 2160
BspANI GGCC 6 cut(s) 673, 846, 909, 975, 1271, 1287
BspCNI CTCAG 6 cut(s) 395, 622, 722, 1129, 1540, 2074
BspDI ATCGAT 1 cut(s) 1595
BspFNI CGCG 1 cut(s) 2160
BspHI TCATGA 1 cut(s) 853
BspLI GGNNCC 4 cut(s) 82, 567, 568, 1162
BspMAI CTGCAG 1 cut(s) 1189
BspMI ACCTGC 1 cut(s) 457
BspPI GGATC 3 cut(s) 75, 88, 2115
BspQI GCTCTTC 1 cut(s) 750
BspT104I TTCGAA 2 cut(s) 1513, 1878
BspTI CTTAAG 1 cut(s) 683
BspTNI GGTCTC 1 cut(s) 1571
BsrDI GCAATG 1 cut(s) 1097
BsrI ACTGG 6 cut(s) 137, 847, 1012, 1474, 1786, 1978
BssECI CCNNGG 4 cut(s) 113, 1272, 1660, 2158
BssMI GATC 8 cut(s) 80, 130, 205, 233, 664, 1228, 2107, 2126
BssT1I CCWWGG 1 cut(s) 1272
Bst2UI CCWGG 4 cut(s) 6, 1289, 1662, 1888
Bst4CI ACNGT 5 cut(s) 836, 1145, 1390, 1917, 2185
Bst6I CTCTTC 4 cut(s) 309, 750, 1173, 2022
BstAFI CTTAAG 1 cut(s) 683
BstBI TTCGAA 2 cut(s) 1513, 1878
BstC8I GCNNGC 9 cut(s) 336, 690, 1264, 1614, 1833, 1837, 1841, 1957, 2101
BstDEI CTNAG 8 cut(s) 366, 382, 630, 709, 841, 1116, 1548, 2082
BstDSI CCRYGG 2 cut(s) 1272, 2158
BstENI CCTNNNNNAGG 1 cut(s) 1610
BstF5I GGATG 5 cut(s) 244, 1417, 1440, 1993, 2065
BstFNI CGCG 1 cut(s) 2160
BstKTI GATC 8 cut(s) 83, 133, 208, 236, 667, 1231, 2110, 2129
BstMAI GTCTC 5 cut(s) 467, 1055, 1320, 1350, 1571
BstMBI GATC 8 cut(s) 80, 130, 205, 233, 664, 1228, 2107, 2126
BstMCI CGRYCG 1 cut(s) 236
BstMWI GCNNNNNNNGC 6 cut(s) 679, 749, 932, 1268, 1277, 1367
BstNI CCWGG 4 cut(s) 6, 1289, 1662, 1888
BstNSI RCATGY 1 cut(s) 1720
BstSCI CCNGG 6 cut(s) 4, 113, 1287, 1660, 1682, 1886
BstSFI CTRYAG 2 cut(s) 1185, 1628
BstUI CGCG 1 cut(s) 2160
BstV1I GCAGC 6 cut(s) 181, 836, 1171, 1225, 1329, 1348
BstV2I GAAGAC 1 cut(s) 1429
BstX2I RGATCY 1 cut(s) 80
BstXI CCANNNNNNTGG 1 cut(s) 281
BstYI RGATCY 1 cut(s) 80
Bsu15I ATCGAT 1 cut(s) 1595
Bsu36I CCTNAGG 2 cut(s) 709, 1548
BsuRI GGCC 6 cut(s) 673, 846, 909, 975, 1271, 1287
BsuTUI ATCGAT 1 cut(s) 1595
BtgI CCRYGG 2 cut(s) 1272, 2158
BtrI CACGTC 2 cut(s) 817, 2056
BtsCI GGATG 5 cut(s) 244, 1417, 1440, 1993, 2065
BtsIMutI CAGTG 1 cut(s) 1386
BveI ACCTGC 1 cut(s) 457
Cac8I GCNNGC 9 cut(s) 336, 690, 1264, 1614, 1833, 1837, 1841, 1957, 2101
CaiI CAGNNNCTG 1 cut(s) 562
CciI TCATGA 1 cut(s) 853
Cfr13I GGNCC 4 cut(s) 566, 671, 973, 1913
Cfr42I CCGCGG 1 cut(s) 2161
ClaI ATCGAT 1 cut(s) 1595
CpoI CGGWCCG 1 cut(s) 1913
Csp6I GTAC 5 cut(s) 93, 323, 1711, 1918, 2008
CspI CGGWCCG 1 cut(s) 1913
CviQI GTAC 5 cut(s) 93, 323, 1711, 1918, 2008
DdeI CTNAG 8 cut(s) 366, 382, 630, 709, 841, 1116, 1548, 2082
DpnI GATC 8 cut(s) 82, 132, 207, 235, 666, 1230, 2109, 2128
DpnII GATC 8 cut(s) 80, 130, 205, 233, 664, 1228, 2107, 2126
DraIII CACNNNGTG 1 cut(s) 1255
DrdI GACNNNNNNGTC 1 cut(s) 132
DseDI GACNNNNNNGTC 1 cut(s) 132
EaeI YGGCCR 2 cut(s) 1269, 1285
Eam1104I CTCTTC 4 cut(s) 309, 750, 1173, 2022
EarI CTCTTC 4 cut(s) 309, 750, 1173, 2022
Eco130I CCWWGG 1 cut(s) 1272
Eco31I GGTCTC 1 cut(s) 1571
Eco47I GGWCC 2 cut(s) 566, 1913
Eco57I CTGAAG 1 cut(s) 1101
Eco81I CCTNAGG 2 cut(s) 709, 1548
Eco88I CYCGRG 2 cut(s) 1244, 1934
EcoNI CCTNNNNNAGG 1 cut(s) 1610
EcoO109I RGGNCCY 1 cut(s) 566
EcoRI GAATTC 2 cut(s) 592, 985
EcoRII CCWGG 4 cut(s) 4, 1287, 1660, 1886
EcoT14I CCWWGG 1 cut(s) 1272
EcoT22I ATGCAT 2 cut(s) 999, 1536
ErhI CCWWGG 1 cut(s) 1272
FalI AAGNNNNNCTT 2 cut(s) 2019, 2051
FaqI GGGAC 3 cut(s) 579, 1526, 2053
FauI CCCGC 1 cut(s) 2165
FauNDI CATATG 1 cut(s) 942
FbaI TGATCA 2 cut(s) 205, 1228
Fnu4HI GCNGC 6 cut(s) 170, 825, 1185, 1239, 1318, 1362
FokI GGATG 5 cut(s) 251, 1404, 1427, 2000, 2072
Fsp4HI GCNGC 6 cut(s) 170, 825, 1185, 1239, 1318, 1362
FspBI CTAG 3 cut(s) 326, 534, 2132
GluI GCNGC 6 cut(s) 170, 825, 1185, 1239, 1318, 1362
GsaI CCCAGC 2 cut(s) 974, 1724
GsuI CTGGAG 1 cut(s) 1803
HaeIII GGCC 6 cut(s) 673, 846, 909, 975, 1271, 1287
HapII CCGG 2 cut(s) 115, 1683
HincII GTYRAC 2 cut(s) 154, 1667
HindII GTYRAC 2 cut(s) 154, 1667
HpaII CCGG 2 cut(s) 115, 1683
HphI GGTGA 5 cut(s) 204, 254, 965, 1070, 1238
Hpy166II GTNNAC 2 cut(s) 154, 1667
Hpy8I GTNNAC 2 cut(s) 154, 1667
Hpy99I CGWCG 1 cut(s) 2057
HpyCH4III ACNGT 5 cut(s) 836, 1145, 1390, 1917, 2185
HpyCH4IV ACGT 4 cut(s) 816, 1846, 2010, 2055
HpyF10VI GCNNNNNNNGC 6 cut(s) 679, 749, 932, 1268, 1277, 1367
HpyF3I CTNAG 8 cut(s) 366, 382, 630, 709, 841, 1116, 1548, 2082
HpySE526I ACGT 4 cut(s) 816, 1846, 2010, 2055
KflI GGGWCCC 1 cut(s) 566
Ksp22I TGATCA 2 cut(s) 205, 1228
KspI CCGCGG 1 cut(s) 2161
Kzo9I GATC 8 cut(s) 80, 130, 205, 233, 664, 1228, 2107, 2126
LguI GCTCTTC 1 cut(s) 750
LmnI GCTCC 2 cut(s) 1776, 2112
Lsp1109I GCAGC 6 cut(s) 181, 836, 1171, 1225, 1329, 1348
LweI GCATC 4 cut(s) 568, 1645, 1957, 1978
MaeI CTAG 3 cut(s) 326, 534, 2132
MaeII ACGT 4 cut(s) 816, 1846, 2010, 2055
MaeIII GTNAC 4 cut(s) 210, 267, 817, 836
MalI GATC 8 cut(s) 82, 132, 207, 235, 666, 1230, 2109, 2128
MboI GATC 8 cut(s) 80, 130, 205, 233, 664, 1228, 2107, 2126
MfeI CAATTG 3 cut(s) 162, 461, 882
MflI RGATCY 1 cut(s) 80
MhlI GDGCHC 2 cut(s) 1251, 1676
MlsI TGGCCA 2 cut(s) 1271, 1287
MluNI TGGCCA 2 cut(s) 1271, 1287
MlyI GAGTC 4 cut(s) 257, 1493, 1548, 1739
MmeI TCCRAC 3 cut(s) 262, 1962, 2175
Mox20I TGGCCA 2 cut(s) 1271, 1287
Mph1103I ATGCAT 2 cut(s) 999, 1536
MscI TGGCCA 2 cut(s) 1271, 1287
MseI TTAA 5 cut(s) 408, 653, 684, 1640, 1818
MslI CAYNNNNRTG 2 cut(s) 575, 1271
Msp20I TGGCCA 2 cut(s) 1271, 1287
MspA1I CMGCKG 2 cut(s) 1424, 2160
MspCI CTTAAG 1 cut(s) 683
MspI CCGG 2 cut(s) 115, 1683
MspR9I CCNGG 6 cut(s) 6, 115, 1289, 1662, 1684, 1888
MunI CAATTG 3 cut(s) 162, 461, 882
Mva1269I GAATGC 2 cut(s) 1510, 1877
MvaI CCWGG 4 cut(s) 6, 1289, 1662, 1888
MvnI CGCG 1 cut(s) 2160
MwoI GCNNNNNNNGC 6 cut(s) 679, 749, 932, 1268, 1277, 1367
NciI CCSGG 2 cut(s) 115, 1684
NcoI CCATGG 1 cut(s) 1272
NdeI CATATG 1 cut(s) 942
NdeII GATC 8 cut(s) 80, 130, 205, 233, 664, 1228, 2107, 2126
NlaIV GGNNCC 4 cut(s) 82, 567, 568, 1162
NmuCI GTSAC 2 cut(s) 210, 817
NsiI ATGCAT 2 cut(s) 999, 1536
NspI RCATGY 1 cut(s) 1720
NspV TTCGAA 2 cut(s) 1513, 1878
OliI CACNNNNGTG 1 cut(s) 575
PaeR7I CTCGAG 1 cut(s) 1244
PagI TCATGA 1 cut(s) 853
PciSI GCTCTTC 1 cut(s) 750
PctI GAATGC 2 cut(s) 1510, 1877
PflMI CCANNNNNTGG 3 cut(s) 143, 1294, 1427
PkrI GCNGC 6 cut(s) 171, 826, 1186, 1240, 1319, 1363
Ple19I CGATCG 1 cut(s) 236
PleI GAGTC 4 cut(s) 256, 1492, 1547, 1739
PpsI GAGTC 4 cut(s) 256, 1492, 1547, 1739
PpuMI RGGWCCY 1 cut(s) 566
Psp1406I AACGTT 1 cut(s) 1846
Psp5II RGGWCCY 1 cut(s) 566
Psp6I CCWGG 4 cut(s) 4, 1287, 1660, 1886
PspFI CCCAGC 2 cut(s) 970, 1720
PspGI CCWGG 4 cut(s) 4, 1287, 1660, 1886
PspN4I GGNNCC 4 cut(s) 82, 567, 568, 1162
PspPI GGNCC 4 cut(s) 566, 671, 973, 1913
PspPPI RGGWCCY 1 cut(s) 566
PstI CTGCAG 1 cut(s) 1189
PstNI CAGNNNCTG 1 cut(s) 562
PsuI RGATCY 1 cut(s) 80
PvuI CGATCG 1 cut(s) 236
PvuII CAGCTG 1 cut(s) 1424
RsaI GTAC 5 cut(s) 94, 324, 1712, 1919, 2009
RsaNI GTAC 5 cut(s) 93, 323, 1711, 1918, 2008
RseI CAYNNNNRTG 2 cut(s) 575, 1271
Rsr2I CGGWCCG 1 cut(s) 1913
RsrII CGGWCCG 1 cut(s) 1913
SacII CCGCGG 1 cut(s) 2161
SapI GCTCTTC 1 cut(s) 750
SaqAI TTAA 5 cut(s) 408, 653, 684, 1640, 1818
SatI GCNGC 6 cut(s) 170, 825, 1185, 1239, 1318, 1362
Sau3AI GATC 8 cut(s) 80, 130, 205, 233, 664, 1228, 2107, 2126
Sau96I GGNCC 4 cut(s) 566, 671, 973, 1913
ScaI AGTACT 2 cut(s) 94, 324
SchI GAGTC 4 cut(s) 257, 1493, 1548, 1739
ScrFI CCNGG 6 cut(s) 6, 115, 1289, 1662, 1684, 1888
SduI GDGCHC 2 cut(s) 1251, 1676
SfaNI GCATC 4 cut(s) 568, 1645, 1957, 1978
SfcI CTRYAG 2 cut(s) 1185, 1628
Sfr274I CTCGAG 1 cut(s) 1244
Sfr303I CCGCGG 1 cut(s) 2161
SfuI TTCGAA 2 cut(s) 1513, 1878
SgrBI CCGCGG 1 cut(s) 2161
SinI GGWCC 2 cut(s) 566, 1913
SlaI CTCGAG 1 cut(s) 1244
SmiMI CAYNNNNRTG 2 cut(s) 575, 1271
SmlI CTYRAG 5 cut(s) 683, 980, 1244, 1607, 1866
SmoI CTYRAG 5 cut(s) 683, 980, 1244, 1607, 1866
SsiI CCGC 5 cut(s) 1444, 1616, 1911, 2158, 2160
SspMI CTAG 3 cut(s) 326, 534, 2132
StyD4I CCNGG 6 cut(s) 4, 113, 1287, 1660, 1682, 1886
StyI CCWWGG 1 cut(s) 1272
TaaI ACNGT 5 cut(s) 836, 1145, 1390, 1917, 2185
TaiI ACGT 4 cut(s) 819, 1849, 2013, 2058
TatI WGTACW 3 cut(s) 92, 322, 1710
Tru1I TTAA 5 cut(s) 408, 653, 684, 1640, 1818
Tru9I TTAA 5 cut(s) 408, 653, 684, 1640, 1818
TscAI CASTG 1 cut(s) 1393
TseFI GTSAC 2 cut(s) 210, 817
TseI GCWGC 6 cut(s) 169, 824, 1184, 1238, 1317, 1361
Tsp45I GTSAC 2 cut(s) 210, 817
TspGWI ACGGA 3 cut(s) 418, 565, 1763
TspRI CASTG 1 cut(s) 1393
Van91I CCANNNNNTGG 3 cut(s) 143, 1294, 1427
Vha464I CTTAAG 1 cut(s) 683
VpaK11BI GGWCC 2 cut(s) 566, 1913
XagI CCTNNNNNAGG 1 cut(s) 1610
XapI RAATTY 7 cut(s) 43, 544, 592, 929, 985, 1476, 1515
XceI RCATGY 1 cut(s) 1720
XcmI CCANNNNNNNNNTGG 3 cut(s) 1270, 1894, 1999
XhoI CTCGAG 1 cut(s) 1244
XspI CTAG 3 cut(s) 326, 534, 2132
ZrmI AGTACT 2 cut(s) 94, 324
Zsp2I ATGCAT 2 cut(s) 999, 1536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.