Rh7DG139100

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0010793
Physical Location & Seq
Reverse (-)
11790415 .. 11794501
4087 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG139100.1

Sequence Viewer

Length: 2199 bp
ATGCCTGCAATTGTTGAAGGGGTGGTGAATGAATCGAGTGGGAATTCTCCACCTCACAAGGAAAACTTGGCGGTGATTAGATCCCCGAAAAGTACTCTGAGTGCACATAGCCCTCGGAGTATGCGAAATGATCATCCGGTTGAGGGGGCAGTTGACACCTCAATTGAGCAGCTTTATGAGAATGTGTGTGACATGCAGAGCTCTGATCACTCACCTTCAAGGCGTAGTTTTCGATCAGATGGGGAGGAGTCTAGGATTGATTCCGAGTTGCGCCATCTTGTTGGAGGAGAGATGAGGGAGGTGGAGATAATGGAAGAGGAGGTGCATTCAAAGCCAGTGGATGATTCTCGTAGTGAGTCAAGTTCCAAGAAGGAAGGTTCGTCCATTGGTAGAAAGTCAGGAAAGATTGATAAGCCTCAATCTCCAAGTACAAAATCCACTTCTCCACGCAACTCAAAGAAAAGTGCTCGCATGCAGGTCGACTCCGAGACTTCATCAAAATCAGTTTCCAAGGGAAAAAGTCCTGACAAACCTCCCCTGCGTAAGCATAGTGATAAGACTCTACCAAAACCTGTGGGAGCAACTCCTGTTAAGAAAAACAGGAAATCACCTTCTGGAGGCTCCAAGTTGCAGACTGGAACCGAGGATTCAGCTGAATCAGGACTTAATTCGGACCTCGGGCCATTTTTGTTAAAGCAAGCAAGGGATTTGATTTCTTCAGGGGATAATCCCCAGAAAGCTCTTGAGTTAGCCCTTCGAGCTACAAAATCGTTTGAACTATGTGCAAATGGGAAACCCTGCTTAGAGCTAGTAATGTGTTTGCATGTTACATCGGCAATTTACTGTAGCTTAGGCCAGTACAGTGAGGCAATTCCGGTTCTTGAGCGCTCAATTGAGATTTCACCCATTGAGGAAGGCCAAGATCATGCCCTTGCTAAATTTGCTGGTCACATGCAGTTGGGTGATACTTATGCTATGCTGGGCCAACTTGAAAATTCACTTGCGCATTATGCAACTGGATTGGAAATTCAGAAACAAATTTTGGGAGAAACAGATCCAAGAGTTGGTGAAACTTGTAGATATCTGGCTGAAGCTCATGTTCAAGCATTACAATTTGAGGAGGCTCAAAGGCTTTGCCAGATAGCTCTTGACACTCACAAAGAGAATGGTTCCCCAGCTTCTATGGAAGAGGCAGCAGATAGGAGACTCATGGGTCTTATATGTGAAACAAAGGGAGATCATGAAGCAGCTCTTGAGCATCTTGTTTTAGCCAGCATGGCTATGGTGGCAAATGGCCAGGAAGTGGAGGTAGCTTCTGTTGACAGCAGCATTGGAGACACATACTTATCCTTGTCTCGGTATGATGAGGCTGTTTTTGCTTATCAGAAGGCACTGAATGTGTTCAAGACCACTAAAGGAGAGAATCATCCATCTGTTGGTTCAGTTTTCATCCGTCTGGCAGATTTGTATAACAGGACAGGGAAAGTTAAGGAATCAGTATCATACTGTGAGAATGCTCTTCGAATTTATGAAAAACCCATGCCCGGAGTCCCTCCTGAGGAAATGGCAAGTGGTCTCACAGATATTGCAGCTATCTATGAATCAATGAATGAGCTCGAGCAGGCAGTCAAGTTGTTACAGAAGGCGTTAAAAATATACAATGATGCCCCTGGTCAGCAAAGCACAGTAGCAGGGATAGAAGCCCAAATGGGGGTCATGAACTACATGTTGGGGAATTATTCTGAATCTTATGAGTCCTTCAAGAATGCCATCACAAAGCTCCGCGCTACTGGAGAAAAGAAATCTGCCTTCTTTGGGATTGTTCTGAACCAAATGGGGCTTGCTTGTGTACAACGTTATGATATAAATGAAGCTCAAGAATTCTTTGAAGAAGCCAGAACTGTTTTGGAGCAAGAGTGTGGGCCATATCACCCTGATACACTTGGCGTATATAGCAATCTTGCAGGCACTTATGATGCAGTTGGAAGGTTGGATGATGCAATTGAACTGTTGGAATTTGTTGTTGGGATGAGGGAAGAAAAGCTAGGGACAGCTAATCCTGATGTGGATGATGAGAAAAGAAGGTTGGCTGATTTATTGAAAGAAACGGGCAAAGTTCGGAACAGAAAAGCCAGATCACTAGAGAACCTCCTTGATGCCAACTCTCATGGTATAAACAATGATGGAATCAAGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001655 GO:0001822 GO:0001889 GO:0001894 GO:0001895 GO:0001947 GO:0002009 GO:0003007 GO:0003143 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003341 GO:0003351 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005929 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007275 GO:0007368 GO:0007369 GO:0007389 GO:0007507 GO:0008150 GO:0009653 GO:0009790 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016043 GO:0022603 GO:0022607 GO:0023051 GO:0023057 GO:0030030 GO:0030031 GO:0030111 GO:0030178 GO:0030323 GO:0030324 GO:0031016 GO:0032501 GO:0032502 GO:0035050 GO:0035239 GO:0035295 GO:0035469 GO:0042592 GO:0042995 GO:0043226 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044782 GO:0045494 GO:0045595 GO:0045596 GO:0045995 GO:0048496 GO:0048513 GO:0048519 GO:0048523 GO:0048562 GO:0048565 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048729 GO:0048731 GO:0048732 GO:0048856 GO:0048871 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051239 GO:0051960 GO:0055123 GO:0060026 GO:0060027 GO:0060249 GO:0060271 GO:0060287 GO:0060429 GO:0060541 GO:0060562 GO:0060828 GO:0060993 GO:0061008 GO:0061371 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071907 GO:0071908 GO:0071909 GO:0071910 GO:0072001 GO:0072189 GO:0072359 GO:0090090 GO:0090175 GO:0090178 GO:0120025 GO:0120031 GO:0120036 GO:1905276 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000095 GO:2000167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

732

Amino Acids

80.08

Weight (kDa)

5.4

Isoelectric Point (pI)

46.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_12 PF13424 318 - 377 7.3e-07 Tetratricopeptide repeat
TPR_MalT PF17874 372 - 553 6.4e-07 MalT-like TPR region
TPR_NPHP3 PF24885 431 - 567 1.2e-11 Nephrocystin-3 TPR domain
TPR_12 PF13424 437 - 512 1.9e-10 Tetratricopeptide repeat
TPR_12 PF13424 608 - 672 1.1e-10 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010793)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27500 AT1G27500
fragaria_vesca FvH4_5g05250 FvH4_5g05250 FvH4_5g05250
malus_domestica MD06G1174800.v1.1 MD14G1181500.v1.1
prunus_persica Prupe.5G174500_v2.0.a1 Prupe.5G174500_v2.0.a1
pyrus_communis pycom06g15580 pycom14g15090
rosa_chinensis RchiOBHm_Chr7g0193621
rosa_laevigata RLG00000004255
rosa_multiflora Rmu_sc0042944.1_g000001
rosa_roxburghii Rroxscaffold_3G00261950
rosa_rugosa Rorug07G0011200
rosa_samantha Rh7BG137900 Rh7CG141500 Rh7DG139100
rosa_wichuraiana Rw7G011730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1212
Acc16I TGCGCA 1 cut(s) 1005
Acc36I ACCTGC 1 cut(s) 466
AccB7I CCANNNNNTGG 3 cut(s) 1064, 1303, 1436
AccI GTMKAC 1 cut(s) 480
AccII CGCG 1 cut(s) 1785
AciI CCGC 2 cut(s) 71, 1783
AclI AACGTT 1 cut(s) 1855
AclWI GGATC 2 cut(s) 75, 1049
AcoI YGGCCR 1 cut(s) 1294
AcsI RAATTY 8 cut(s) 43, 938, 994, 1026, 1038, 1524, 1880, 2015
AcuI CTGAAG 2 cut(s) 702, 1110
AfaI GTAC 4 cut(s) 94, 430, 860, 1851
AfeI AGCGCT 1 cut(s) 887
AflIII ACRYGT 1 cut(s) 1725
AjnI CCWGG 2 cut(s) 1296, 1669
AjuI GAANNNNNNNTTGG 8 cut(s) 1025, 1057, 1712, 1744, 2007, 2039, 2069, 2101
Alw21I GWGCWC 4 cut(s) 106, 203, 469, 1617
Alw26I GTCTC 5 cut(s) 482, 1198, 1329, 1359, 1580
Alw44I GTGCAC 1 cut(s) 102
AlwI GGATC 2 cut(s) 75, 1049
Ama87I CYCGRG 2 cut(s) 677, 1616
Aor51HI AGCGCT 1 cut(s) 887
AoxI GGCC 6 cut(s) 680, 853, 916, 982, 1294, 1922
ApaLI GTGCAC 1 cut(s) 102
ApeKI GCWGC 5 cut(s) 169, 1193, 1247, 1326, 1589
ApoI RAATTY 8 cut(s) 43, 938, 994, 1026, 1038, 1524, 1880, 2015
Asp700I GAANNNNTTC 1 cut(s) 1400
AspLEI GCGC 4 cut(s) 273, 888, 1006, 1787
AspS9I GGNCC 4 cut(s) 673, 680, 982, 1922
AsuC2I CCSGG 1 cut(s) 1545
AsuHPI GGTGA 8 cut(s) 37, 85, 204, 600, 894, 974, 1079, 1922
AsuII TTCGAA 1 cut(s) 1522
AvaI CYCGRG 2 cut(s) 677, 1616
AvaII GGWCC 1 cut(s) 673
AxyI CCTNAGG 1 cut(s) 1557
BaeGI GKGCMC 1 cut(s) 106
BalI TGGCCA 1 cut(s) 1296
BanII GRGCYC 2 cut(s) 203, 1617
Bbv12I GWGCWC 4 cut(s) 106, 203, 469, 1617
BbvI GCAGC 5 cut(s) 181, 1205, 1259, 1338, 1601
BccI CCATC 5 cut(s) 233, 282, 1438, 1778, 2177
BcgI CGANNNNNNTGC 2 cut(s) 460, 494
BciT130I CCWGG 2 cut(s) 1298, 1671
BclI TGATCA 2 cut(s) 130, 205
BcnI CCSGG 1 cut(s) 1545
BcoDI GTCTC 5 cut(s) 482, 1198, 1329, 1359, 1580
BfaI CTAG 4 cut(s) 252, 809, 2045, 2141
BfmI CTRYAG 1 cut(s) 844
BfoI RGCGCY 1 cut(s) 889
BfuAI ACCTGC 1 cut(s) 466
BglI GCCNNNNNGGC 1 cut(s) 1277
BisI GCNGC 5 cut(s) 170, 1194, 1248, 1327, 1590
BlsI GCNGC 5 cut(s) 171, 1195, 1249, 1328, 1591
BmcAI AGTACT 1 cut(s) 94
Bme1390I CCNGG 3 cut(s) 1298, 1545, 1671
Bme18I GGWCC 1 cut(s) 673
BmeT110I CYCGRG 2 cut(s) 677, 1616
BmgT120I GGNCC 4 cut(s) 673, 680, 982, 1922
BmiI GGNNCC 3 cut(s) 622, 640, 1171
BmrFI CCNGG 3 cut(s) 1298, 1545, 1671
BmsI GCATC 5 cut(s) 1267, 1654, 1966, 1987, 2146
BpmI CTGGAG 2 cut(s) 636, 1812
Bpu10I CCTNAGC 1 cut(s) 850
Bpu14I TTCGAA 1 cut(s) 1522
BpuEI CTTGAG 4 cut(s) 764, 902, 1274, 1860
BpuMI CCSGG 1 cut(s) 1545
BsaI GGTCTC 1 cut(s) 1580
BsaJI CCNNGG 5 cut(s) 113, 510, 642, 676, 1669
BsaWI WCCGGW 2 cut(s) 136, 874
BsaXI ACNNNNNCTCC 2 cut(s) 1901, 1931
Bse1I ACTGG 5 cut(s) 335, 640, 856, 1021, 1795
Bse21I CCTNAGG 1 cut(s) 1557
BseBI CCWGG 2 cut(s) 1298, 1671
BseDI CCNNGG 5 cut(s) 113, 510, 642, 676, 1669
BseGI GGATG 7 cut(s) 133, 346, 1426, 1449, 1999, 2034, 2074
BseMII CTCAG 2 cut(s) 89, 1548
BseNI ACTGG 5 cut(s) 335, 640, 856, 1021, 1795
BseRI GAGGAG 4 cut(s) 260, 300, 332, 1133
BseSI GKGCMC 1 cut(s) 106
BseXI GCAGC 5 cut(s) 181, 1205, 1259, 1338, 1601
BseYI CCCAGC 2 cut(s) 979, 1174
Bsh1236I CGCG 1 cut(s) 1785
BshFI GGCC 6 cut(s) 682, 855, 918, 984, 1296, 1924
BsiHKAI GWGCWC 4 cut(s) 106, 203, 469, 1617
BsiHKCI CYCGRG 2 cut(s) 677, 1616
BsiSI CCGG 3 cut(s) 137, 875, 1545
BslFI GGGAC 2 cut(s) 1535, 2062
BsmAI GTCTC 5 cut(s) 482, 1198, 1329, 1359, 1580
BsmFI GGGAC 2 cut(s) 1535, 2062
BsmI GAATGC 3 cut(s) 325, 1519, 1771
BsnI GGCC 6 cut(s) 682, 855, 918, 984, 1296, 1924
Bso31I GGTCTC 1 cut(s) 1580
BsoBI CYCGRG 2 cut(s) 677, 1616
Bsp119I TTCGAA 1 cut(s) 1522
Bsp1286I GDGCHC 4 cut(s) 106, 203, 469, 1617
Bsp1407I TGTACA 1 cut(s) 1849
Bsp143I GATC 8 cut(s) 80, 130, 205, 233, 922, 1054, 1237, 2135
BspACI CCGC 2 cut(s) 71, 1783
BspANI GGCC 6 cut(s) 682, 855, 918, 984, 1296, 1924
BspCNI CTCAG 2 cut(s) 90, 1549
BspFNI CGCG 1 cut(s) 1785
BspHI TCATGA 2 cut(s) 1240, 1716
BspLI GGNNCC 3 cut(s) 622, 640, 1171
BspMI ACCTGC 1 cut(s) 466
BspPI GGATC 2 cut(s) 75, 1049
BspQI GCTCTTC 1 cut(s) 1524
BspT104I TTCGAA 1 cut(s) 1522
BspTNI GGTCTC 1 cut(s) 1580
BsrGI TGTACA 1 cut(s) 1849
BsrI ACTGG 5 cut(s) 335, 640, 856, 1021, 1795
BssECI CCNNGG 5 cut(s) 113, 510, 642, 676, 1669
BssMI GATC 8 cut(s) 80, 130, 205, 233, 922, 1054, 1237, 2135
BssT1I CCWWGG 1 cut(s) 510
Bst2UI CCWGG 2 cut(s) 1298, 1671
Bst4CI ACNGT 6 cut(s) 845, 863, 1508, 1687, 1903, 2010
Bst6I CTCTTC 3 cut(s) 309, 1182, 1524
BstAUI TGTACA 1 cut(s) 1849
BstBI TTCGAA 1 cut(s) 1522
BstC8I GCNNGC 8 cut(s) 6, 469, 473, 699, 1273, 1623, 1842, 1966
BstDEI CTNAG 4 cut(s) 98, 802, 850, 1557
BstENI CCTNNNNNAGG 1 cut(s) 615
BstF5I GGATG 7 cut(s) 133, 346, 1426, 1449, 1999, 2034, 2074
BstFNI CGCG 1 cut(s) 1785
BstH2I RGCGCY 1 cut(s) 889
BstHHI GCGC 4 cut(s) 273, 888, 1006, 1787
BstKTI GATC 8 cut(s) 83, 133, 208, 236, 925, 1057, 1240, 2138
BstMAI GTCTC 5 cut(s) 482, 1198, 1329, 1359, 1580
BstMBI GATC 8 cut(s) 80, 130, 205, 233, 922, 1054, 1237, 2135
BstMWI GCNNNNNNNGC 8 cut(s) 331, 758, 941, 1010, 1277, 1286, 1376, 1953
BstNI CCWGG 2 cut(s) 1298, 1671
BstNSI RCATGY 5 cut(s) 196, 475, 827, 955, 1729
BstSCI CCNGG 3 cut(s) 1296, 1543, 1669
BstSFI CTRYAG 1 cut(s) 844
BstSLI GKGCMC 1 cut(s) 106
BstUI CGCG 1 cut(s) 1785
BstV1I GCAGC 5 cut(s) 181, 1205, 1259, 1338, 1601
BstX2I RGATCY 2 cut(s) 80, 1054
BstXI CCANNNNNNTGG 1 cut(s) 281
BstYI RGATCY 2 cut(s) 80, 1054
Bsu36I CCTNAGG 1 cut(s) 1557
BsuRI GGCC 6 cut(s) 682, 855, 918, 984, 1296, 1924
BtsCI GGATG 7 cut(s) 133, 346, 1426, 1449, 1999, 2034, 2074
BtsIMutI CAGTG 3 cut(s) 342, 868, 1391
BveI ACCTGC 1 cut(s) 466
Cac8I GCNNGC 8 cut(s) 6, 469, 473, 699, 1273, 1623, 1842, 1966
CciI TCATGA 2 cut(s) 1240, 1716
CfoI GCGC 4 cut(s) 273, 888, 1006, 1787
Cfr13I GGNCC 4 cut(s) 673, 680, 982, 1922
Csp6I GTAC 4 cut(s) 93, 429, 859, 1850
CspCI CAANNNNNGTGG 4 cut(s) 318, 353, 555, 590
CviQI GTAC 4 cut(s) 93, 429, 859, 1850
DdeI CTNAG 4 cut(s) 98, 802, 850, 1557
DpnI GATC 8 cut(s) 82, 132, 207, 235, 924, 1056, 1239, 2137
DpnII GATC 8 cut(s) 80, 130, 205, 233, 922, 1054, 1237, 2135
DrdI GACNNNNNNGTC 1 cut(s) 1212
DseDI GACNNNNNNGTC 1 cut(s) 1212
EaeI YGGCCR 1 cut(s) 1294
Eam1104I CTCTTC 3 cut(s) 309, 1182, 1524
EarI CTCTTC 3 cut(s) 309, 1182, 1524
Ecl136II GAGCTC 2 cut(s) 201, 1615
Eco130I CCWWGG 1 cut(s) 510
Eco24I GRGCYC 2 cut(s) 203, 1617
Eco31I GGTCTC 1 cut(s) 1580
Eco32I GATATC 1 cut(s) 1082
Eco47I GGWCC 1 cut(s) 673
Eco47III AGCGCT 1 cut(s) 887
Eco53kI GAGCTC 2 cut(s) 201, 1615
Eco57I CTGAAG 2 cut(s) 702, 1110
Eco81I CCTNAGG 1 cut(s) 1557
Eco88I CYCGRG 2 cut(s) 677, 1616
EcoICRI GAGCTC 2 cut(s) 201, 1615
EcoNI CCTNNNNNAGG 1 cut(s) 615
EcoRI GAATTC 2 cut(s) 43, 1880
EcoRII CCWGG 2 cut(s) 1296, 1669
EcoRV GATATC 1 cut(s) 1082
EcoT14I CCWWGG 1 cut(s) 510
EcoT38I GRGCYC 2 cut(s) 203, 1617
ErhI CCWWGG 1 cut(s) 510
FalI AAGNNNNNCTT 4 cut(s) 50, 82, 1236, 1268
FaqI GGGAC 2 cut(s) 1535, 2062
FbaI TGATCA 2 cut(s) 130, 205
FblI GTMKAC 1 cut(s) 480
Fnu4HI GCNGC 5 cut(s) 170, 1194, 1248, 1327, 1590
FokI GGATG 7 cut(s) 120, 353, 1413, 1436, 2006, 2041, 2081
FriOI GRGCYC 2 cut(s) 203, 1617
Fsp4HI GCNGC 5 cut(s) 170, 1194, 1248, 1327, 1590
FspBI CTAG 4 cut(s) 252, 809, 2045, 2141
FspI TGCGCA 1 cut(s) 1005
GlaI GCGC 4 cut(s) 272, 887, 1005, 1786
GluI GCNGC 5 cut(s) 170, 1194, 1248, 1327, 1590
GsaI CCCAGC 2 cut(s) 983, 1178
GsuI CTGGAG 2 cut(s) 636, 1812
HaeII RGCGCY 1 cut(s) 889
HaeIII GGCC 6 cut(s) 682, 855, 918, 984, 1296, 1924
HapII CCGG 3 cut(s) 137, 875, 1545
HhaI GCGC 4 cut(s) 273, 888, 1006, 1787
Hin6I GCGC 4 cut(s) 271, 886, 1004, 1785
HinP1I GCGC 4 cut(s) 271, 886, 1004, 1785
HincII GTYRAC 3 cut(s) 154, 481, 1321
HindII GTYRAC 3 cut(s) 154, 481, 1321
HpaII CCGG 3 cut(s) 137, 875, 1545
HphI GGTGA 8 cut(s) 37, 85, 204, 600, 894, 974, 1079, 1922
Hpy166II GTNNAC 5 cut(s) 104, 154, 481, 1321, 1850
Hpy8I GTNNAC 5 cut(s) 104, 154, 481, 1321, 1850
HpyCH4III ACNGT 6 cut(s) 845, 863, 1508, 1687, 1903, 2010
HpyCH4IV ACGT 1 cut(s) 1855
HpyF10VI GCNNNNNNNGC 8 cut(s) 331, 758, 941, 1010, 1277, 1286, 1376, 1953
HpyF3I CTNAG 4 cut(s) 98, 802, 850, 1557
HpySE526I ACGT 1 cut(s) 1855
HspAI GCGC 4 cut(s) 271, 886, 1004, 1785
Ksp22I TGATCA 2 cut(s) 130, 205
Kzo9I GATC 8 cut(s) 80, 130, 205, 233, 922, 1054, 1237, 2135
LguI GCTCTTC 1 cut(s) 1524
LmnI GCTCC 4 cut(s) 578, 626, 1785, 1909
Lsp1109I GCAGC 5 cut(s) 181, 1205, 1259, 1338, 1601
LweI GCATC 5 cut(s) 1267, 1654, 1966, 1987, 2146
MaeI CTAG 4 cut(s) 252, 809, 2045, 2141
MaeII ACGT 1 cut(s) 1855
MaeIII GTNAC 4 cut(s) 188, 826, 947, 1635
MalI GATC 8 cut(s) 82, 132, 207, 235, 924, 1056, 1239, 2137
MboI GATC 8 cut(s) 80, 130, 205, 233, 922, 1054, 1237, 2135
MboII GAAGA 6 cut(s) 326, 708, 1199, 1511, 1901, 2048
MfeI CAATTG 4 cut(s) 9, 162, 891, 2001
MflI RGATCY 2 cut(s) 80, 1054
MhlI GDGCHC 4 cut(s) 106, 203, 469, 1617
MlsI TGGCCA 1 cut(s) 1296
MluNI TGGCCA 1 cut(s) 1296
MlyI GAGTC 7 cut(s) 257, 365, 476, 553, 1200, 1557, 1763
MmeI TCCRAC 4 cut(s) 262, 1963, 1971, 1992
Mox20I TGGCCA 1 cut(s) 1296
MroXI GAANNNNTTC 1 cut(s) 1400
MscI TGGCCA 1 cut(s) 1296
MseI TTAA 5 cut(s) 591, 666, 692, 1488, 1649
MslI CAYNNNNRTG 1 cut(s) 1280
Msp20I TGGCCA 1 cut(s) 1296
MspA1I CMGCKG 1 cut(s) 653
MspI CCGG 3 cut(s) 137, 875, 1545
MspR9I CCNGG 3 cut(s) 1298, 1545, 1671
MunI CAATTG 4 cut(s) 9, 162, 891, 2001
Mva1269I GAATGC 3 cut(s) 325, 1519, 1771
MvaI CCWGG 2 cut(s) 1298, 1671
MvnI CGCG 1 cut(s) 1785
MwoI GCNNNNNNNGC 8 cut(s) 331, 758, 941, 1010, 1277, 1286, 1376, 1953
NciI CCSGG 1 cut(s) 1545
NdeII GATC 8 cut(s) 80, 130, 205, 233, 922, 1054, 1237, 2135
NlaIV GGNNCC 3 cut(s) 622, 640, 1171
NmuCI GTSAC 2 cut(s) 188, 947
NsbI TGCGCA 1 cut(s) 1005
NspI RCATGY 5 cut(s) 196, 475, 827, 955, 1729
NspV TTCGAA 1 cut(s) 1522
PaeI GCATGC 1 cut(s) 475
PaeR7I CTCGAG 1 cut(s) 1616
PagI TCATGA 2 cut(s) 1240, 1716
PciI ACATGT 1 cut(s) 1725
PciSI GCTCTTC 1 cut(s) 1524
PcsI WCGNNNNNNNCGW 1 cut(s) 121
PctI GAATGC 3 cut(s) 325, 1519, 1771
PdmI GAANNNNTTC 1 cut(s) 1400
PflMI CCANNNNNTGG 3 cut(s) 1064, 1303, 1436
PkrI GCNGC 5 cut(s) 171, 1195, 1249, 1328, 1591
PleI GAGTC 7 cut(s) 256, 364, 476, 553, 1200, 1556, 1762
PpsI GAGTC 7 cut(s) 256, 364, 476, 553, 1200, 1556, 1762
PscI ACATGT 1 cut(s) 1725
Psp124BI GAGCTC 2 cut(s) 203, 1617
Psp1406I AACGTT 1 cut(s) 1855
Psp6I CCWGG 2 cut(s) 1296, 1669
PspFI CCCAGC 2 cut(s) 979, 1174
PspGI CCWGG 2 cut(s) 1296, 1669
PspN4I GGNNCC 3 cut(s) 622, 640, 1171
PspPI GGNCC 4 cut(s) 673, 680, 982, 1922
PspXI VCTCGAGB 1 cut(s) 1616
PsuI RGATCY 2 cut(s) 80, 1054
PvuII CAGCTG 1 cut(s) 653
RsaI GTAC 4 cut(s) 94, 430, 860, 1851
RsaNI GTAC 4 cut(s) 93, 429, 859, 1850
RseI CAYNNNNRTG 1 cut(s) 1280
SacI GAGCTC 2 cut(s) 203, 1617
SalI GTCGAC 1 cut(s) 479
SapI GCTCTTC 1 cut(s) 1524
SaqAI TTAA 5 cut(s) 591, 666, 692, 1488, 1649
SatI GCNGC 5 cut(s) 170, 1194, 1248, 1327, 1590
Sau3AI GATC 8 cut(s) 80, 130, 205, 233, 922, 1054, 1237, 2135
Sau96I GGNCC 4 cut(s) 673, 680, 982, 1922
ScaI AGTACT 1 cut(s) 94
SchI GAGTC 7 cut(s) 257, 365, 476, 553, 1200, 1557, 1763
ScrFI CCNGG 3 cut(s) 1298, 1545, 1671
SduI GDGCHC 4 cut(s) 106, 203, 469, 1617
SfaNI GCATC 5 cut(s) 1267, 1654, 1966, 1987, 2146
SfcI CTRYAG 1 cut(s) 844
Sfr274I CTCGAG 1 cut(s) 1616
SfuI TTCGAA 1 cut(s) 1522
SinI GGWCC 1 cut(s) 673
SlaI CTCGAG 1 cut(s) 1616
SmiMI CAYNNNNRTG 1 cut(s) 1280
SmlI CTYRAG 5 cut(s) 743, 881, 1253, 1616, 1875
SmoI CTYRAG 5 cut(s) 743, 881, 1253, 1616, 1875
SphI GCATGC 1 cut(s) 475
SsiI CCGC 2 cut(s) 71, 1783
SspMI CTAG 4 cut(s) 252, 809, 2045, 2141
SstI GAGCTC 2 cut(s) 203, 1617
StyD4I CCNGG 3 cut(s) 1296, 1543, 1669
StyI CCWWGG 1 cut(s) 510
TaaI ACNGT 6 cut(s) 845, 863, 1508, 1687, 1903, 2010
TaiI ACGT 1 cut(s) 1858
TaqI TCGA 6 cut(s) 35, 232, 480, 757, 1522, 1617
TatI WGTACW 4 cut(s) 92, 428, 858, 1849
Tru1I TTAA 5 cut(s) 591, 666, 692, 1488, 1649
Tru9I TTAA 5 cut(s) 591, 666, 692, 1488, 1649
TscAI CASTG 3 cut(s) 342, 868, 1398
TseFI GTSAC 2 cut(s) 188, 947
TseI GCWGC 5 cut(s) 169, 1193, 1247, 1326, 1589
Tsp45I GTSAC 2 cut(s) 188, 947
TspDTI ATGAA 9 cut(s) 45, 483, 1257, 1438, 1545, 1614, 1622, 1733, 1884
TspGWI ACGGA 1 cut(s) 1442
TspRI CASTG 3 cut(s) 342, 868, 1398
Van91I CCANNNNNTGG 3 cut(s) 1064, 1303, 1436
VneI GTGCAC 1 cut(s) 102
VpaK11BI GGWCC 1 cut(s) 673
XagI CCTNNNNNAGG 1 cut(s) 615
XapI RAATTY 8 cut(s) 43, 938, 994, 1026, 1038, 1524, 1880, 2015
XceI RCATGY 5 cut(s) 196, 475, 827, 955, 1729
XcmI CCANNNNNNNNNTGG 2 cut(s) 1279, 1903
XhoI CTCGAG 1 cut(s) 1616
XmiI GTMKAC 1 cut(s) 480
XmnI GAANNNNTTC 1 cut(s) 1400
XspI CTAG 4 cut(s) 252, 809, 2045, 2141
ZrmI AGTACT 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.