Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0010793

Physical Location & Seq

Genomic Coordinates Reverse (-)

27427941 .. 27429475

Gene Structure 1535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1181500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGCCTGGAATTGTTGAGGAGGTGGTAAATGAATCACATGAAAATTCCACGCCAAGTAAGGAAAATACAGCTCTGAATGGATCCCCAAAGAGTACTCTGAATCAGCAAAGCCCCCGGAGTAGAGGACTTGATCATCCTGTTGATGGGGTGGTTGACACCTCAATTGAGCAGCTTTATGAGAATGTGTGTGATATGCAGAGTTCTGATCAGTCACCTTCAAGGCGTAGTTTTCGATCGGATGGTGATGAGTCTAGGATTGATTCAGAGTTACGCCATCTTGTTGGAGGAGAGATGAGAGAGGTGGAGATAATGGAAGAGGAAGTACTAGAAAAGCCAGCGTATGATTCTCGTAGTGATTCAAGTTCTAAGAAAGGTTTGTCCTCAGATAGAAAATCAGGAACGATGGTTAAATCTGCAAGTACAAAATCCGTTTCTTCAGGGAACTCGAAGAAAGTTGCTCAATTGCAGGTCGAGACTGAAACTTCATCAAAATCAGTTGTGAAGGGAAGAAGTCCTGACAAACCTCCAATTCCTAGCAATAAAAATTTCCAAAAACAGCATCCGGGACCCACTCCCGTGAAGAAAGGCAGGAATTCATCTGTGGCAGGGTCAAAGTTGCAGAATGGAACTGAGGATTTGGCTGAATCAGGGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001655 GO:0001822 GO:0001889 GO:0001894 GO:0001895 GO:0001947 GO:0002009 GO:0003007 GO:0003143 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003341 GO:0003351 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005929 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007275 GO:0007368 GO:0007369 GO:0007389 GO:0007507 GO:0008150 GO:0009653 GO:0009790 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016043 GO:0022603 GO:0022607 GO:0023051 GO:0023057 GO:0030030 GO:0030031 GO:0030111 GO:0030178 GO:0030323 GO:0030324 GO:0031016 GO:0032501 GO:0032502 GO:0035050 GO:0035239 GO:0035295 GO:0035469 GO:0042592 GO:0042995 GO:0043226 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044782 GO:0045494 GO:0045595 GO:0045596 GO:0045995 GO:0048496 GO:0048513 GO:0048519 GO:0048523 GO:0048562 GO:0048565 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048729 GO:0048731 GO:0048732 GO:0048856 GO:0048871 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051239 GO:0051960 GO:0055123 GO:0060026 GO:0060027 GO:0060249 GO:0060271 GO:0060287 GO:0060429 GO:0060541 GO:0060562 GO:0060828 GO:0060993 GO:0061008 GO:0061371 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071907 GO:0071908 GO:0071909 GO:0071910 GO:0072001 GO:0072189 GO:0072359 GO:0090090 GO:0090175 GO:0090178 GO:0120025 GO:0120031 GO:0120036 GO:1905276 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000095 GO:2000167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

219

Amino Acids

23.5

Weight (kDa)

5.9

Isoelectric Point (pI)

69.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27500 AT1G27500
fragaria_vesca	FvH4_5g05250 FvH4_5g05250 FvH4_5g05250
malus_domestica	MD06G1174800.v1.1 MD14G1181500.v1.1
prunus_persica	Prupe.5G174500_v2.0.a1 Prupe.5G174500_v2.0.a1
pyrus_communis	pycom06g15580 pycom14g15090
rosa_chinensis	RchiOBHm_Chr7g0193621
rosa_laevigata	RLG00000004255
rosa_multiflora	Rmu_sc0042944.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261950
rosa_rugosa	Rorug07G0011200
rosa_samantha	Rh7BG137900 Rh7CG141500 Rh7DG139100
rosa_wichuraiana	Rw7G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	457
AclWI	GGATC	2 cut(s)	75, 88
AcsI	RAATTY	3 cut(s)	43, 544, 592
AcuI	CTGAAG	1 cut(s)	420
AfaI	GTAC	3 cut(s)	94, 324, 421
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgsI	TTSAA	2 cut(s)	219, 360
AjnI	CCWGG	1 cut(s)	4
AleI	CACNNNNGTG	1 cut(s)	575
AluBI	AGCT	2 cut(s)	71, 172
AluI	AGCT	2 cut(s)	71, 172
Alw26I	GTCTC	1 cut(s)	467
AlwI	GGATC	2 cut(s)	75, 88
ApeKI	GCWGC	1 cut(s)	169
ApoI	RAATTY	3 cut(s)	43, 544, 592
AspS9I	GGNCC	1 cut(s)	566
AsuC2I	CCSGG	2 cut(s)	115, 564
AsuHPI	GGTGA	2 cut(s)	204, 254
AvaII	GGWCC	1 cut(s)	566
BamHI	GGATCC	1 cut(s)	80
BarI	GAAGNNNNNNTAC	2 cut(s)	306, 338
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	4 cut(s)	137, 233, 282, 397
BciT130I	CCWGG	1 cut(s)	6
BclI	TGATCA	2 cut(s)	130, 205
BcnI	CCSGG	2 cut(s)	115, 564
BcoDI	GTCTC	1 cut(s)	467
BfaI	CTAG	3 cut(s)	252, 326, 534
BfuAI	ACCTGC	1 cut(s)	457
BisI	GCNGC	1 cut(s)	170
BlsI	GCNGC	1 cut(s)	171
BmcAI	AGTACT	2 cut(s)	94, 324
Bme1390I	CCNGG	3 cut(s)	6, 115, 564
Bme18I	GGWCC	1 cut(s)	566
BmgT120I	GGNCC	1 cut(s)	566
BmiI	GGNNCC	3 cut(s)	82, 567, 568
BmrFI	CCNGG	3 cut(s)	6, 115, 564
BmsI	GCATC	1 cut(s)	568
BpuMI	CCSGG	2 cut(s)	115, 564
BsaJI	CCNNGG	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
BseBI	CCWGG	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	113
BseGI	GGATG	3 cut(s)	133, 244, 559
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMII	CTCAG	2 cut(s)	396, 621
BseRI	GAGGAG	2 cut(s)	32, 300
BseXI	GCAGC	1 cut(s)	181
Bsh1285I	CGRYCG	1 cut(s)	236
BsiEI	CGRYCG	1 cut(s)	236
BsiSI	CCGG	2 cut(s)	115, 563
BslFI	GGGAC	1 cut(s)	579
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	467
BsmFI	GGGAC	1 cut(s)	579
Bsp143I	GATC	4 cut(s)	80, 130, 205, 233
BspCNI	CTCAG	2 cut(s)	395, 622
BspLI	GGNNCC	3 cut(s)	82, 567, 568
BspMI	ACCTGC	1 cut(s)	457
BspPI	GGATC	2 cut(s)	75, 88
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	4 cut(s)	80, 130, 205, 233
Bst2UI	CCWGG	1 cut(s)	6
Bst6I	CTCTTC	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	3 cut(s)	366, 382, 630
BstF5I	GGATG	3 cut(s)	133, 244, 559
BstKTI	GATC	4 cut(s)	83, 133, 208, 236
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	4 cut(s)	80, 130, 205, 233
BstMCI	CGRYCG	1 cut(s)	236
BstNI	CCWGG	1 cut(s)	6
BstSCI	CCNGG	3 cut(s)	4, 113, 562
BstV1I	GCAGC	1 cut(s)	181
BstX2I	RGATCY	1 cut(s)	80
BstXI	CCANNNNNNTGG	1 cut(s)	281
BstYI	RGATCY	1 cut(s)	80
BtsCI	GGATG	3 cut(s)	133, 244, 559
BveI	ACCTGC	1 cut(s)	457
Cac8I	GCNNGC	1 cut(s)	336
Cfr13I	GGNCC	1 cut(s)	566
Csp6I	GTAC	3 cut(s)	93, 323, 420
CviAII	CATG	1 cut(s)	38
CviJI	RGCY	5 cut(s)	71, 111, 172, 334, 641
CviKI_1	RGCY	5 cut(s)	71, 111, 172, 334, 641
CviQI	GTAC	3 cut(s)	93, 323, 420
DdeI	CTNAG	3 cut(s)	366, 382, 630
DpnI	GATC	4 cut(s)	82, 132, 207, 235
DpnII	GATC	4 cut(s)	80, 130, 205, 233
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	566
Eco57I	CTGAAG	1 cut(s)	420
EcoO109I	RGGNCCY	1 cut(s)	566
EcoRI	GAATTC	1 cut(s)	592
EcoRII	CCWGG	1 cut(s)	4
FaeI	CATG	1 cut(s)	41
FaiI	YATR	4 cut(s)	39, 177, 194, 342
FaqI	GGGAC	1 cut(s)	579
FatI	CATG	1 cut(s)	37
FbaI	TGATCA	2 cut(s)	130, 205
Fnu4HI	GCNGC	1 cut(s)	170
FokI	GGATG	3 cut(s)	120, 251, 546
Fsp4HI	GCNGC	1 cut(s)	170
FspBI	CTAG	3 cut(s)	252, 326, 534
GluI	GCNGC	1 cut(s)	170
HapII	CCGG	2 cut(s)	115, 563
Hin1II	CATG	1 cut(s)	41
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	7 cut(s)	32, 100, 248, 260, 344, 356, 644
HpaII	CCGG	2 cut(s)	115, 563
HphI	GGTGA	2 cut(s)	204, 254
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	6 cut(s)	75, 99, 205, 238, 265, 385
Hpy188III	TCNNGA	3 cut(s)	396, 472, 515
Hpy8I	GTNNAC	1 cut(s)	154
HpyAV	CCTTC	2 cut(s)	225, 496
HpyCH4V	TGCA	4 cut(s)	196, 416, 466, 619
HpyF3I	CTNAG	3 cut(s)	366, 382, 630
Hsp92II	CATG	1 cut(s)	41
KflI	GGGWCCC	1 cut(s)	566
Ksp22I	TGATCA	2 cut(s)	130, 205
Kzo9I	GATC	4 cut(s)	80, 130, 205, 233
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	1 cut(s)	568
MaeI	CTAG	3 cut(s)	252, 326, 534
MaeIII	GTNAC	2 cut(s)	210, 267
MalI	GATC	4 cut(s)	82, 132, 207, 235
MboI	GATC	4 cut(s)	80, 130, 205, 233
MboII	GAAGA	5 cut(s)	326, 426, 460, 519, 592
MfeI	CAATTG	2 cut(s)	162, 461
MflI	RGATCY	1 cut(s)	80
MluCI	AATT	7 cut(s)	9, 43, 162, 461, 528, 544, 592
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	262
MseI	TTAA	1 cut(s)	408
MslI	CAYNNNNRTG	1 cut(s)	575
MspI	CCGG	2 cut(s)	115, 563
MspR9I	CCNGG	3 cut(s)	6, 115, 564
MunI	CAATTG	2 cut(s)	162, 461
MvaI	CCWGG	1 cut(s)	6
NciI	CCSGG	2 cut(s)	115, 564
NdeII	GATC	4 cut(s)	80, 130, 205, 233
NlaIII	CATG	1 cut(s)	41
NlaIV	GGNNCC	3 cut(s)	82, 567, 568
NmuCI	GTSAC	1 cut(s)	210
OliI	CACNNNNGTG	1 cut(s)	575
PfeI	GAWTC	6 cut(s)	32, 100, 260, 344, 356, 644
PfoI	TCCNGGA	1 cut(s)	562
PkrI	GCNGC	1 cut(s)	171
Ple19I	CGATCG	1 cut(s)	236
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PpuMI	RGGWCCY	1 cut(s)	566
Psp5II	RGGWCCY	1 cut(s)	566
Psp6I	CCWGG	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	4
PspN4I	GGNNCC	3 cut(s)	82, 567, 568
PspPI	GGNCC	1 cut(s)	566
PspPPI	RGGWCCY	1 cut(s)	566
PsuI	RGATCY	1 cut(s)	80
PvuI	CGATCG	1 cut(s)	236
RsaI	GTAC	3 cut(s)	94, 324, 421
RsaNI	GTAC	3 cut(s)	93, 323, 420
RseI	CAYNNNNRTG	1 cut(s)	575
SaqAI	TTAA	1 cut(s)	408
SatI	GCNGC	1 cut(s)	170
Sau3AI	GATC	4 cut(s)	80, 130, 205, 233
Sau96I	GGNCC	1 cut(s)	566
ScaI	AGTACT	2 cut(s)	94, 324
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	3 cut(s)	6, 115, 564
SetI	ASST	9 cut(s)	24, 73, 161, 174, 217, 303, 376, 471, 526
SfaNI	GCATC	1 cut(s)	568
SinI	GGWCC	1 cut(s)	566
SmiMI	CAYNNNNRTG	1 cut(s)	575
Sse9I	AATT	7 cut(s)	9, 43, 162, 461, 528, 544, 592
SspMI	CTAG	3 cut(s)	252, 326, 534
StyD4I	CCNGG	3 cut(s)	4, 113, 562
TaqI	TCGA	3 cut(s)	232, 446, 471
TasI	AATT	7 cut(s)	9, 43, 162, 461, 528, 544, 592
TatI	WGTACW	3 cut(s)	92, 322, 419
TfiI	GAWTC	6 cut(s)	32, 100, 260, 344, 356, 644
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TseFI	GTSAC	1 cut(s)	210
TseI	GCWGC	1 cut(s)	169
Tsp45I	GTSAC	1 cut(s)	210
TspDTI	ATGAA	4 cut(s)	45, 54, 474, 585
TspGWI	ACGGA	1 cut(s)	418
VpaK11BI	GGWCC	1 cut(s)	566
XapI	RAATTY	3 cut(s)	43, 544, 592
XspI	CTAG	3 cut(s)	252, 326, 534
ZrmI	AGTACT	2 cut(s)	94, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.