RchiOBHm_Chr7g0193621

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0010793
Physical Location & Seq
Reverse (-)
11905388 .. 11909163
3776 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17315

Sequence Viewer

Length: 2196 bp
ATGCCTGCAATTGTTGAAGGGGTGGTGAATGAATCGAGTGGGAATTCTCCACCTCACAAGGAAAACTTGGCGGTGATTAGATCCCCGAAAAGTACTCTGAGTGCACATAGCCCTCGGAGTATGCGAAATGATCATCCGGTTGAGGGGGCAGTTGACACCTCAATTGAGCAGCTTTATGAGAATGTGTGTGACATGCAGAGCTCTGATCACTCACCTTCAAGGCGTAGTTTTCGATCAGATGGGGAGGAGTCTAGGATTGATTCCGAGTTGCGCCATCTTGTTGGAGGAGAGATGAGGGAGGTGGAGATAATGGAAGAGGAGGTGCATTCAAAGCCAGTGGATGATTCTCGTAGTGAGTCAAGTTCCAAGAAGGAAGGTTCGTCCATTGGTAGAAAGTCAGGAAAGATTGATAAGCCTCAATCTCCAAGTACAAAATCCACTTCTCCACGCAACTCAAAGAAAAGTGCTCGCATGCAGGACTCCGAGACTTCATCAAAATCAGTTTCCAAGGGAAAAAGTCCTGACAAACCTCCCCTGCGTAAGCATAGTGATAAGACTCTACCAAAACCTGTGGGAGCAACTCCTGTTAAGAAAAACAGGAAATCACCTTCTGGAGGCTCCAAGTTGCAGACTGGAACCGAGGATTCAGCTGAATCAGGACTTAATTCGGACCTGGGGCCATTTTTGTTAAAGCAAGCAAGGGATTTGATTTCTTCAGGGGATAATCCCCAGAAAGCTCTTGAGTTAGCCCTTCGAGCTACAAAATCGTTTGAACTATGTGCAAATGGGAAACCCTGCTTAGAGCTAGTAATGTGTTTGCATGTTACATCGGCAATTTACTGTAGCTTAGGCCAGTACAGTGAGGCAATTCCGGTTCTTGAGCGCTCAATTGAGATTTCACCCATTGAGGAAGGCCAAGATCATGCCCTTGCTAAATTTGCTGGTCACATGCAGTTGGGTGATACTTATGCTATGCTGGGCCAACTGGAAAATTCACTTGCGCATTACGCAACTGGATTGGAAATTCAGAAACAAATTTTGGGAGAAACGGATCCAAGAGTTGGTGAAACTTGTAGATATCTGGCTGAAGCTCATGTTCAAGCATTACAATTTGAGGAGGCTCAAAGGCTTTGCCAGATAGCTCTTGACACTCACAAAGAGAATGGTTCCCCAGCTTCTATGGAAGAGGCAGCAGATAGGAGACTCATGGGTCTTATATGTGAAACAAAGGGAGATCATGAAGCAGCTCTTGAGCATCTTGTTTTAGCCAGCATGGCTATGGTGGCAAATGGCCAGGAAGTGGAGGTAGCTTCTGTTGACAGCAGCATTGGAGACACATACTTATCCTTGTCTCGGTATGATGAGGCTGTTTTTGCTTATCAGAAGGCACTGAATGTGTTCAAGACCACTAAAGGAGAGAATCATCCATCTGTTGGTTCAGTTTTCATCCGTCTGGCAGATTTGTATAACAGGACAGGGAAAGTTAAGGAATCAGTATCATACTGTGAGAATGCTCTTCGAATTTATGAAAAACCCATGCCCGGAGTCCCTCCTGAGGAAATGGCAAGTGGTCTCACAGATATTGCAGCTATCTATGAATCAATGAATGAGCTCGAGCAGGCAGTCAAGTTGTTACAGAAGGCGTTAAAAATATACAATGATGCCCCTGGTCAGCAAAGCACAGTAGCAGGGATAGAAGCCCAAATGGGGGTCATGAACTACATGTTGGGGAATTATTCTGAATCTTATGAGTCCTTCAAGAATGCCATCACAAAGCTCCGCGCTACTGGAGAAAAGAAATCTGCCTTCTTTGGGATTGTTCTGAACCAAATGGGGCTTGCTTGTGTACAACGTTATGATATAAATGAAGCTCAAGAATTCTTTGAAGAAGCCAGAACTGTTTTGGAGCAAGAGTGTGGGCCATATCACCCTGATACACTTGGCGTATATAGCAATCTTGCAGGCACTTATGATGCAGTTGGAAGGTTGGATGATGCAATTGAACTGTTGGAATTTGTTGTTGGGATGAGGGAAGAAAAGCTAGGGACAGCTAATCCTGATGTGGATGATGAGAAAAGAAGGTTGGCTGATTTATTGAAAGAAACGGGCAAAGTTCGGAACAGAAAAGCCAGATCACTAGAGAACCTCCTTGATGCCAACTCTCATGGTATAAACAATGATGGAATCAAGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001655 GO:0001822 GO:0001889 GO:0001894 GO:0001895 GO:0001947 GO:0002009 GO:0003007 GO:0003143 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003341 GO:0003351 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005929 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007275 GO:0007368 GO:0007369 GO:0007389 GO:0007507 GO:0008150 GO:0009653 GO:0009790 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016043 GO:0022603 GO:0022607 GO:0023051 GO:0023057 GO:0030030 GO:0030031 GO:0030111 GO:0030178 GO:0030323 GO:0030324 GO:0031016 GO:0032501 GO:0032502 GO:0035050 GO:0035239 GO:0035295 GO:0035469 GO:0042592 GO:0042995 GO:0043226 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044782 GO:0045494 GO:0045595 GO:0045596 GO:0045995 GO:0048496 GO:0048513 GO:0048519 GO:0048523 GO:0048562 GO:0048565 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048729 GO:0048731 GO:0048732 GO:0048856 GO:0048871 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051239 GO:0051960 GO:0055123 GO:0060026 GO:0060027 GO:0060249 GO:0060271 GO:0060287 GO:0060429 GO:0060541 GO:0060562 GO:0060828 GO:0060993 GO:0061008 GO:0061371 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071907 GO:0071908 GO:0071909 GO:0071910 GO:0072001 GO:0072189 GO:0072359 GO:0090090 GO:0090175 GO:0090178 GO:0120025 GO:0120031 GO:0120036 GO:1905276 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000095 GO:2000167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

731

Amino Acids

79.98

Weight (kDa)

5.4

Isoelectric Point (pI)

46.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_12 PF13424 317 - 376 7.3e-07 Tetratricopeptide repeat
TPR_MalT PF17874 371 - 552 6.4e-07 MalT-like TPR region
TPR_NPHP3 PF24885 430 - 566 1.2e-11 Nephrocystin-3 TPR domain
TPR_12 PF13424 436 - 511 1.9e-10 Tetratricopeptide repeat
TPR_12 PF13424 607 - 671 1.1e-10 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010793)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27500 AT1G27500
fragaria_vesca FvH4_5g05250 FvH4_5g05250 FvH4_5g05250
malus_domestica MD06G1174800.v1.1 MD14G1181500.v1.1
prunus_persica Prupe.5G174500_v2.0.a1 Prupe.5G174500_v2.0.a1
pyrus_communis pycom06g15580 pycom14g15090
rosa_chinensis RchiOBHm_Chr7g0193621
rosa_laevigata RLG00000004255
rosa_multiflora Rmu_sc0042944.1_g000001
rosa_roxburghii Rroxscaffold_3G00261950
rosa_rugosa Rorug07G0011200
rosa_samantha Rh7BG137900 Rh7CG141500 Rh7DG139100
rosa_wichuraiana Rw7G011730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1209
Acc16I TGCGCA 1 cut(s) 1002
AccB7I CCANNNNNTGG 3 cut(s) 1061, 1300, 1433
AccII CGCG 1 cut(s) 1782
AciI CCGC 2 cut(s) 71, 1780
AclI AACGTT 1 cut(s) 1852
AclWI GGATC 3 cut(s) 75, 1046, 1059
AcoI YGGCCR 1 cut(s) 1291
AcsI RAATTY 8 cut(s) 43, 935, 991, 1023, 1035, 1521, 1877, 2012
AcuI CTGAAG 2 cut(s) 699, 1107
AfaI GTAC 4 cut(s) 94, 430, 857, 1848
AfeI AGCGCT 1 cut(s) 884
AflIII ACRYGT 1 cut(s) 1722
AjnI CCWGG 3 cut(s) 672, 1293, 1666
AjuI GAANNNNNNNTTGG 8 cut(s) 1022, 1054, 1709, 1741, 2004, 2036, 2066, 2098
Alw21I GWGCWC 4 cut(s) 106, 203, 469, 1614
Alw26I GTCTC 5 cut(s) 479, 1195, 1326, 1356, 1577
Alw44I GTGCAC 1 cut(s) 102
AlwI GGATC 3 cut(s) 75, 1046, 1059
Ama87I CYCGRG 1 cut(s) 1613
Aor51HI AGCGCT 1 cut(s) 884
AoxI GGCC 6 cut(s) 677, 850, 913, 979, 1291, 1919
ApaLI GTGCAC 1 cut(s) 102
ApeKI GCWGC 5 cut(s) 169, 1190, 1244, 1323, 1586
ApoI RAATTY 8 cut(s) 43, 935, 991, 1023, 1035, 1521, 1877, 2012
Asp700I GAANNNNTTC 1 cut(s) 1397
AspLEI GCGC 4 cut(s) 273, 885, 1003, 1784
AspS9I GGNCC 4 cut(s) 670, 677, 979, 1919
AsuC2I CCSGG 1 cut(s) 1542
AsuHPI GGTGA 8 cut(s) 37, 85, 204, 597, 891, 971, 1076, 1919
AsuII TTCGAA 1 cut(s) 1519
AvaI CYCGRG 1 cut(s) 1613
AvaII GGWCC 1 cut(s) 670
AxyI CCTNAGG 1 cut(s) 1554
BaeGI GKGCMC 1 cut(s) 106
BalI TGGCCA 1 cut(s) 1293
BamHI GGATCC 1 cut(s) 1051
BanII GRGCYC 2 cut(s) 203, 1614
Bbv12I GWGCWC 4 cut(s) 106, 203, 469, 1614
BbvI GCAGC 5 cut(s) 181, 1202, 1256, 1335, 1598
BccI CCATC 5 cut(s) 233, 282, 1435, 1775, 2174
BciT130I CCWGG 3 cut(s) 674, 1295, 1668
BclI TGATCA 2 cut(s) 130, 205
BcnI CCSGG 1 cut(s) 1542
BcoDI GTCTC 5 cut(s) 479, 1195, 1326, 1356, 1577
BfaI CTAG 4 cut(s) 252, 806, 2042, 2138
BfmI CTRYAG 1 cut(s) 841
BfoI RGCGCY 1 cut(s) 886
BglI GCCNNNNNGGC 1 cut(s) 1274
BisI GCNGC 5 cut(s) 170, 1191, 1245, 1324, 1587
BlsI GCNGC 5 cut(s) 171, 1192, 1246, 1325, 1588
BmcAI AGTACT 1 cut(s) 94
Bme1390I CCNGG 4 cut(s) 674, 1295, 1542, 1668
Bme18I GGWCC 1 cut(s) 670
BmeT110I CYCGRG 1 cut(s) 1613
BmgT120I GGNCC 4 cut(s) 670, 677, 979, 1919
BmiI GGNNCC 5 cut(s) 619, 637, 678, 1053, 1168
BmrFI CCNGG 4 cut(s) 674, 1295, 1542, 1668
BmsI GCATC 5 cut(s) 1264, 1651, 1963, 1984, 2143
BpmI CTGGAG 2 cut(s) 633, 1809
Bpu10I CCTNAGC 1 cut(s) 847
Bpu14I TTCGAA 1 cut(s) 1519
BpuEI CTTGAG 4 cut(s) 761, 899, 1271, 1857
BpuMI CCSGG 1 cut(s) 1542
BsaI GGTCTC 1 cut(s) 1577
BsaJI CCNNGG 5 cut(s) 113, 507, 639, 673, 1666
BsaWI WCCGGW 2 cut(s) 136, 871
BsaXI ACNNNNNCTCC 2 cut(s) 1898, 1928
Bse1I ACTGG 6 cut(s) 335, 637, 853, 990, 1018, 1792
Bse21I CCTNAGG 1 cut(s) 1554
BseBI CCWGG 3 cut(s) 674, 1295, 1668
BseDI CCNNGG 5 cut(s) 113, 507, 639, 673, 1666
BseGI GGATG 7 cut(s) 133, 346, 1423, 1446, 1996, 2031, 2071
BseMII CTCAG 2 cut(s) 89, 1545
BseNI ACTGG 6 cut(s) 335, 637, 853, 990, 1018, 1792
BseRI GAGGAG 4 cut(s) 260, 300, 332, 1130
BseSI GKGCMC 1 cut(s) 106
BseXI GCAGC 5 cut(s) 181, 1202, 1256, 1335, 1598
BseYI CCCAGC 2 cut(s) 976, 1171
Bsh1236I CGCG 1 cut(s) 1782
BshFI GGCC 6 cut(s) 679, 852, 915, 981, 1293, 1921
BsiHKAI GWGCWC 4 cut(s) 106, 203, 469, 1614
BsiHKCI CYCGRG 1 cut(s) 1613
BsiSI CCGG 3 cut(s) 137, 872, 1542
BslFI GGGAC 2 cut(s) 1532, 2059
BsmAI GTCTC 5 cut(s) 479, 1195, 1326, 1356, 1577
BsmFI GGGAC 2 cut(s) 1532, 2059
BsmI GAATGC 3 cut(s) 325, 1516, 1768
BsnI GGCC 6 cut(s) 679, 852, 915, 981, 1293, 1921
Bso31I GGTCTC 1 cut(s) 1577
BsoBI CYCGRG 1 cut(s) 1613
Bsp119I TTCGAA 1 cut(s) 1519
Bsp1286I GDGCHC 4 cut(s) 106, 203, 469, 1614
Bsp1407I TGTACA 1 cut(s) 1846
Bsp143I GATC 8 cut(s) 80, 130, 205, 233, 919, 1051, 1234, 2132
BspACI CCGC 2 cut(s) 71, 1780
BspANI GGCC 6 cut(s) 679, 852, 915, 981, 1293, 1921
BspCNI CTCAG 2 cut(s) 90, 1546
BspFNI CGCG 1 cut(s) 1782
BspHI TCATGA 2 cut(s) 1237, 1713
BspLI GGNNCC 5 cut(s) 619, 637, 678, 1053, 1168
BspPI GGATC 3 cut(s) 75, 1046, 1059
BspQI GCTCTTC 1 cut(s) 1521
BspT104I TTCGAA 1 cut(s) 1519
BspTNI GGTCTC 1 cut(s) 1577
BsrGI TGTACA 1 cut(s) 1846
BsrI ACTGG 6 cut(s) 335, 637, 853, 990, 1018, 1792
BssECI CCNNGG 5 cut(s) 113, 507, 639, 673, 1666
BssMI GATC 8 cut(s) 80, 130, 205, 233, 919, 1051, 1234, 2132
BssT1I CCWWGG 1 cut(s) 507
Bst2UI CCWGG 3 cut(s) 674, 1295, 1668
Bst4CI ACNGT 6 cut(s) 842, 860, 1505, 1684, 1900, 2007
Bst6I CTCTTC 3 cut(s) 309, 1179, 1521
BstAUI TGTACA 1 cut(s) 1846
BstBI TTCGAA 1 cut(s) 1519
BstC8I GCNNGC 8 cut(s) 6, 469, 473, 696, 1270, 1620, 1839, 1963
BstDEI CTNAG 4 cut(s) 98, 799, 847, 1554
BstENI CCTNNNNNAGG 1 cut(s) 612
BstF5I GGATG 7 cut(s) 133, 346, 1423, 1446, 1996, 2031, 2071
BstFNI CGCG 1 cut(s) 1782
BstH2I RGCGCY 1 cut(s) 886
BstHHI GCGC 4 cut(s) 273, 885, 1003, 1784
BstKTI GATC 8 cut(s) 83, 133, 208, 236, 922, 1054, 1237, 2135
BstMAI GTCTC 5 cut(s) 479, 1195, 1326, 1356, 1577
BstMBI GATC 8 cut(s) 80, 130, 205, 233, 919, 1051, 1234, 2132
BstMWI GCNNNNNNNGC 8 cut(s) 331, 755, 938, 1007, 1274, 1283, 1373, 1950
BstNI CCWGG 3 cut(s) 674, 1295, 1668
BstNSI RCATGY 5 cut(s) 196, 475, 824, 952, 1726
BstSCI CCNGG 4 cut(s) 672, 1293, 1540, 1666
BstSFI CTRYAG 1 cut(s) 841
BstSLI GKGCMC 1 cut(s) 106
BstUI CGCG 1 cut(s) 1782
BstV1I GCAGC 5 cut(s) 181, 1202, 1256, 1335, 1598
BstX2I RGATCY 2 cut(s) 80, 1051
BstXI CCANNNNNNTGG 1 cut(s) 281
BstYI RGATCY 2 cut(s) 80, 1051
Bsu36I CCTNAGG 1 cut(s) 1554
BsuRI GGCC 6 cut(s) 679, 852, 915, 981, 1293, 1921
BtsCI GGATG 7 cut(s) 133, 346, 1423, 1446, 1996, 2031, 2071
BtsIMutI CAGTG 3 cut(s) 342, 865, 1388
Cac8I GCNNGC 8 cut(s) 6, 469, 473, 696, 1270, 1620, 1839, 1963
CciI TCATGA 2 cut(s) 1237, 1713
CfoI GCGC 4 cut(s) 273, 885, 1003, 1784
Cfr13I GGNCC 4 cut(s) 670, 677, 979, 1919
Csp6I GTAC 4 cut(s) 93, 429, 856, 1847
CspCI CAANNNNNGTGG 4 cut(s) 318, 353, 552, 587
CviQI GTAC 4 cut(s) 93, 429, 856, 1847
DdeI CTNAG 4 cut(s) 98, 799, 847, 1554
DpnI GATC 8 cut(s) 82, 132, 207, 235, 921, 1053, 1236, 2134
DpnII GATC 8 cut(s) 80, 130, 205, 233, 919, 1051, 1234, 2132
DrdI GACNNNNNNGTC 1 cut(s) 1209
DseDI GACNNNNNNGTC 1 cut(s) 1209
EaeI YGGCCR 1 cut(s) 1291
Eam1104I CTCTTC 3 cut(s) 309, 1179, 1521
EarI CTCTTC 3 cut(s) 309, 1179, 1521
Ecl136II GAGCTC 2 cut(s) 201, 1612
Eco130I CCWWGG 1 cut(s) 507
Eco24I GRGCYC 2 cut(s) 203, 1614
Eco31I GGTCTC 1 cut(s) 1577
Eco32I GATATC 1 cut(s) 1079
Eco47I GGWCC 1 cut(s) 670
Eco47III AGCGCT 1 cut(s) 884
Eco53kI GAGCTC 2 cut(s) 201, 1612
Eco57I CTGAAG 2 cut(s) 699, 1107
Eco81I CCTNAGG 1 cut(s) 1554
Eco88I CYCGRG 1 cut(s) 1613
EcoICRI GAGCTC 2 cut(s) 201, 1612
EcoNI CCTNNNNNAGG 1 cut(s) 612
EcoRI GAATTC 2 cut(s) 43, 1877
EcoRII CCWGG 3 cut(s) 672, 1293, 1666
EcoRV GATATC 1 cut(s) 1079
EcoT14I CCWWGG 1 cut(s) 507
EcoT38I GRGCYC 2 cut(s) 203, 1614
ErhI CCWWGG 1 cut(s) 507
FalI AAGNNNNNCTT 4 cut(s) 50, 82, 1233, 1265
FaqI GGGAC 2 cut(s) 1532, 2059
FbaI TGATCA 2 cut(s) 130, 205
Fnu4HI GCNGC 5 cut(s) 170, 1191, 1245, 1324, 1587
FokI GGATG 7 cut(s) 120, 353, 1410, 1433, 2003, 2038, 2078
FriOI GRGCYC 2 cut(s) 203, 1614
Fsp4HI GCNGC 5 cut(s) 170, 1191, 1245, 1324, 1587
FspBI CTAG 4 cut(s) 252, 806, 2042, 2138
FspI TGCGCA 1 cut(s) 1002
GlaI GCGC 4 cut(s) 272, 884, 1002, 1783
GluI GCNGC 5 cut(s) 170, 1191, 1245, 1324, 1587
GsaI CCCAGC 2 cut(s) 980, 1175
GsuI CTGGAG 2 cut(s) 633, 1809
HaeII RGCGCY 1 cut(s) 886
HaeIII GGCC 6 cut(s) 679, 852, 915, 981, 1293, 1921
HapII CCGG 3 cut(s) 137, 872, 1542
HhaI GCGC 4 cut(s) 273, 885, 1003, 1784
Hin6I GCGC 4 cut(s) 271, 883, 1001, 1782
HinP1I GCGC 4 cut(s) 271, 883, 1001, 1782
HincII GTYRAC 2 cut(s) 154, 1318
HindII GTYRAC 2 cut(s) 154, 1318
HpaII CCGG 3 cut(s) 137, 872, 1542
HphI GGTGA 8 cut(s) 37, 85, 204, 597, 891, 971, 1076, 1919
Hpy166II GTNNAC 4 cut(s) 104, 154, 1318, 1847
Hpy8I GTNNAC 4 cut(s) 104, 154, 1318, 1847
HpyCH4III ACNGT 6 cut(s) 842, 860, 1505, 1684, 1900, 2007
HpyCH4IV ACGT 1 cut(s) 1852
HpyF10VI GCNNNNNNNGC 8 cut(s) 331, 755, 938, 1007, 1274, 1283, 1373, 1950
HpyF3I CTNAG 4 cut(s) 98, 799, 847, 1554
HpySE526I ACGT 1 cut(s) 1852
HspAI GCGC 4 cut(s) 271, 883, 1001, 1782
Ksp22I TGATCA 2 cut(s) 130, 205
Kzo9I GATC 8 cut(s) 80, 130, 205, 233, 919, 1051, 1234, 2132
LguI GCTCTTC 1 cut(s) 1521
LmnI GCTCC 4 cut(s) 575, 623, 1782, 1906
Lsp1109I GCAGC 5 cut(s) 181, 1202, 1256, 1335, 1598
LweI GCATC 5 cut(s) 1264, 1651, 1963, 1984, 2143
MaeI CTAG 4 cut(s) 252, 806, 2042, 2138
MaeII ACGT 1 cut(s) 1852
MaeIII GTNAC 4 cut(s) 188, 823, 944, 1632
MalI GATC 8 cut(s) 82, 132, 207, 235, 921, 1053, 1236, 2134
MboI GATC 8 cut(s) 80, 130, 205, 233, 919, 1051, 1234, 2132
MboII GAAGA 6 cut(s) 326, 705, 1196, 1508, 1898, 2045
MfeI CAATTG 4 cut(s) 9, 162, 888, 1998
MflI RGATCY 2 cut(s) 80, 1051
MhlI GDGCHC 4 cut(s) 106, 203, 469, 1614
MlsI TGGCCA 1 cut(s) 1293
MluNI TGGCCA 1 cut(s) 1293
MlyI GAGTC 7 cut(s) 257, 365, 473, 550, 1197, 1554, 1760
MmeI TCCRAC 4 cut(s) 262, 1960, 1968, 1989
Mox20I TGGCCA 1 cut(s) 1293
MroXI GAANNNNTTC 1 cut(s) 1397
MscI TGGCCA 1 cut(s) 1293
MseI TTAA 5 cut(s) 588, 663, 689, 1485, 1646
MslI CAYNNNNRTG 1 cut(s) 1277
Msp20I TGGCCA 1 cut(s) 1293
MspA1I CMGCKG 1 cut(s) 650
MspI CCGG 3 cut(s) 137, 872, 1542
MspR9I CCNGG 4 cut(s) 674, 1295, 1542, 1668
MunI CAATTG 4 cut(s) 9, 162, 888, 1998
Mva1269I GAATGC 3 cut(s) 325, 1516, 1768
MvaI CCWGG 3 cut(s) 674, 1295, 1668
MvnI CGCG 1 cut(s) 1782
MwoI GCNNNNNNNGC 8 cut(s) 331, 755, 938, 1007, 1274, 1283, 1373, 1950
NciI CCSGG 1 cut(s) 1542
NdeII GATC 8 cut(s) 80, 130, 205, 233, 919, 1051, 1234, 2132
NlaIV GGNNCC 5 cut(s) 619, 637, 678, 1053, 1168
NmuCI GTSAC 2 cut(s) 188, 944
NsbI TGCGCA 1 cut(s) 1002
NspI RCATGY 5 cut(s) 196, 475, 824, 952, 1726
NspV TTCGAA 1 cut(s) 1519
PaeI GCATGC 1 cut(s) 475
PaeR7I CTCGAG 1 cut(s) 1613
PagI TCATGA 2 cut(s) 1237, 1713
PciI ACATGT 1 cut(s) 1722
PciSI GCTCTTC 1 cut(s) 1521
PcsI WCGNNNNNNNCGW 1 cut(s) 121
PctI GAATGC 3 cut(s) 325, 1516, 1768
PdmI GAANNNNTTC 1 cut(s) 1397
PflMI CCANNNNNTGG 3 cut(s) 1061, 1300, 1433
PkrI GCNGC 5 cut(s) 171, 1192, 1246, 1325, 1588
PleI GAGTC 7 cut(s) 256, 364, 473, 550, 1197, 1553, 1759
PpsI GAGTC 7 cut(s) 256, 364, 473, 550, 1197, 1553, 1759
PscI ACATGT 1 cut(s) 1722
Psp124BI GAGCTC 2 cut(s) 203, 1614
Psp1406I AACGTT 1 cut(s) 1852
Psp6I CCWGG 3 cut(s) 672, 1293, 1666
PspFI CCCAGC 2 cut(s) 976, 1171
PspGI CCWGG 3 cut(s) 672, 1293, 1666
PspN4I GGNNCC 5 cut(s) 619, 637, 678, 1053, 1168
PspPI GGNCC 4 cut(s) 670, 677, 979, 1919
PspXI VCTCGAGB 1 cut(s) 1613
PsuI RGATCY 2 cut(s) 80, 1051
PvuII CAGCTG 1 cut(s) 650
RsaI GTAC 4 cut(s) 94, 430, 857, 1848
RsaNI GTAC 4 cut(s) 93, 429, 856, 1847
RseI CAYNNNNRTG 1 cut(s) 1277
SacI GAGCTC 2 cut(s) 203, 1614
SapI GCTCTTC 1 cut(s) 1521
SaqAI TTAA 5 cut(s) 588, 663, 689, 1485, 1646
SatI GCNGC 5 cut(s) 170, 1191, 1245, 1324, 1587
Sau3AI GATC 8 cut(s) 80, 130, 205, 233, 919, 1051, 1234, 2132
Sau96I GGNCC 4 cut(s) 670, 677, 979, 1919
ScaI AGTACT 1 cut(s) 94
SchI GAGTC 7 cut(s) 257, 365, 473, 550, 1197, 1554, 1760
ScrFI CCNGG 4 cut(s) 674, 1295, 1542, 1668
SduI GDGCHC 4 cut(s) 106, 203, 469, 1614
SfaNI GCATC 5 cut(s) 1264, 1651, 1963, 1984, 2143
SfcI CTRYAG 1 cut(s) 841
Sfr274I CTCGAG 1 cut(s) 1613
SfuI TTCGAA 1 cut(s) 1519
SinI GGWCC 1 cut(s) 670
SlaI CTCGAG 1 cut(s) 1613
SmiMI CAYNNNNRTG 1 cut(s) 1277
SmlI CTYRAG 5 cut(s) 740, 878, 1250, 1613, 1872
SmoI CTYRAG 5 cut(s) 740, 878, 1250, 1613, 1872
SphI GCATGC 1 cut(s) 475
SsiI CCGC 2 cut(s) 71, 1780
SspMI CTAG 4 cut(s) 252, 806, 2042, 2138
SstI GAGCTC 2 cut(s) 203, 1614
StyD4I CCNGG 4 cut(s) 672, 1293, 1540, 1666
StyI CCWWGG 1 cut(s) 507
TaaI ACNGT 6 cut(s) 842, 860, 1505, 1684, 1900, 2007
TaiI ACGT 1 cut(s) 1855
TaqI TCGA 5 cut(s) 35, 232, 754, 1519, 1614
TatI WGTACW 4 cut(s) 92, 428, 855, 1846
Tru1I TTAA 5 cut(s) 588, 663, 689, 1485, 1646
Tru9I TTAA 5 cut(s) 588, 663, 689, 1485, 1646
TscAI CASTG 3 cut(s) 342, 865, 1395
TseFI GTSAC 2 cut(s) 188, 944
TseI GCWGC 5 cut(s) 169, 1190, 1244, 1323, 1586
Tsp45I GTSAC 2 cut(s) 188, 944
TspDTI ATGAA 9 cut(s) 45, 480, 1254, 1435, 1542, 1611, 1619, 1730, 1881
TspGWI ACGGA 2 cut(s) 1064, 1439
TspRI CASTG 3 cut(s) 342, 865, 1395
Van91I CCANNNNNTGG 3 cut(s) 1061, 1300, 1433
VneI GTGCAC 1 cut(s) 102
VpaK11BI GGWCC 1 cut(s) 670
XagI CCTNNNNNAGG 1 cut(s) 612
XapI RAATTY 8 cut(s) 43, 935, 991, 1023, 1035, 1521, 1877, 2012
XceI RCATGY 5 cut(s) 196, 475, 824, 952, 1726
XcmI CCANNNNNNNNNTGG 2 cut(s) 1276, 1900
XhoI CTCGAG 1 cut(s) 1613
XmnI GAANNNNTTC 1 cut(s) 1397
XspI CTAG 4 cut(s) 252, 806, 2042, 2138
ZrmI AGTACT 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.