Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0016701

Physical Location & Seq

Genomic Coordinates Reverse (-)

3137460 .. 3139571

Gene Structure 2112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g05360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTTGAGGCTGGTATCGAAGAGGCTCCTCCAGGGCTCCCGCGAGGCCCAGTCGCCGGCGGTGATGGCCGCGCCGCGTCGTTTCTACCACGAGAGGGTGGTGGACCACTACGACAACCCCCGCAACGTCGGCTCCTTCGACAAAAACGACCCCTCCGTTGGTACCGGACTCGTCGGCGCTCCCGCCTGCGGTGACGTCATGAAGCTCCAGATTAAGGTCGACGAGCAGGGCAAGATTACTGACGCCGTCTTCAAGACCTTTGGCTGTGGATCCGCCATCGCCTCATCTTCAGTCGCTACGGAATGGGTGAAGGGGAGGCAAATGGAGGAGGTCCTGACAATTAAGAACACGGAAATCGCCAAACATCTCTCTCTTCCTCCAGTCAAGCTACACTGCAGCATGCTTGCCGAGGATGCCATCAAGGCAGCTGTTAAAGACTACCAAACAAAGCTGGCTAAATCATCAAATGGCAGCTCAGAGGCCTCACCTGTGGACAAGGCTGCTAGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005198 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0008150 GO:0008152 GO:0008198 GO:0009987 GO:0010467 GO:0016740 GO:0016782 GO:0019538 GO:0019725 GO:0030003 GO:0031974 GO:0036455 GO:0042592 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048037 GO:0048878 GO:0050801 GO:0051536 GO:0051537 GO:0051539 GO:0051540 GO:0051604 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0097428 GO:0098771 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NifU_N

Protein Analysis

171

Amino Acids

18.26

Weight (kDa)

8.97

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NifU_N	PF01592	29 - 151	3.6e-53	NifU-like N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22220
fragaria_vesca	FvH4_5g05360
malus_domestica	MD06G1173200.v1.1 MD14G1179700.v1.1
prunus_persica	Prupe.5G172700_v2.0.a1
pyrus_communis	pycom06g15430 pycom14g14950
rosa_chinensis	RchiOBHm_Chr7g0193471
rosa_multiflora	Rmu_sc0012783.1_g000005
rosa_roxburghii	Rroxscaffold_3G00262070
rosa_rugosa	Rorug07G0009600
rosa_samantha	Rh7BG136700 Rh7DG137900
rosa_wichuraiana	Rw7G011620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	198
Acc65I	GGTACC	1 cut(s)	161
AccB1I	GGYRCC	1 cut(s)	161
AccI	GTMKAC	1 cut(s)	219
AccII	CGCG	3 cut(s)	42, 71, 76
AciI	CCGC	8 cut(s)	40, 59, 69, 74, 121, 183, 189, 273
AclWI	GGATC	2 cut(s)	264, 277
AcoI	YGGCCR	1 cut(s)	66
AcuI	CTGAAG	1 cut(s)	273
AcyI	GRCGYC	2 cut(s)	195, 243
AfaI	GTAC	1 cut(s)	163
AfiI	CCNNNNNNNGG	5 cut(s)	55, 94, 158, 188, 214
AgsI	TTSAA	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	5 cut(s)	205, 388, 428, 451, 474
AluI	AGCT	5 cut(s)	205, 388, 428, 451, 474
AlwI	GGATC	2 cut(s)	264, 277
AoxI	GGCC	3 cut(s)	45, 66, 480
ApeKI	GCWGC	4 cut(s)	396, 425, 471, 500
Asp718I	GGTACC	1 cut(s)	161
AspLEI	GCGC	2 cut(s)	73, 179
AspS9I	GGNCC	3 cut(s)	46, 103, 331
AsuHPI	GGTGA	4 cut(s)	73, 203, 319, 477
AvaII	GGWCC	2 cut(s)	103, 331
BamHI	GGATCC	1 cut(s)	269
BanI	GGYRCC	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	38
BauI	CACGAG	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	241
BbvI	GCAGC	4 cut(s)	408, 437, 483, 487
BccI	CCATC	3 cut(s)	58, 284, 425
BceAI	ACGGC	1 cut(s)	230
BciT130I	CCWGG	1 cut(s)	32
BfaI	CTAG	1 cut(s)	504
BfmI	CTRYAG	1 cut(s)	394
BfoI	RGCGCY	1 cut(s)	180
BglI	GCCNNNNNGGC	1 cut(s)	422
BisI	GCNGC	6 cut(s)	69, 74, 397, 426, 472, 501
BlsI	GCNGC	6 cut(s)	70, 75, 398, 427, 473, 502
Bme1390I	CCNGG	1 cut(s)	32
Bme18I	GGWCC	2 cut(s)	103, 331
BmgT120I	GGNCC	3 cut(s)	46, 103, 331
BmiI	GGNNCC	5 cut(s)	26, 37, 133, 163, 271
BmrFI	CCNGG	1 cut(s)	32
BmrI	ACTGGG	1 cut(s)	43
BmsI	GCATC	1 cut(s)	403
BmuI	ACTGGG	1 cut(s)	43
BpiI	GAAGAC	1 cut(s)	241
BpmI	CTGGAG	3 cut(s)	14, 191, 363
BsaHI	GRCGYC	2 cut(s)	195, 243
BsaJI	CCNNGG	2 cut(s)	31, 408
BsaWI	WCCGGW	1 cut(s)	164
BsaXI	ACNNNNNCTCC	4 cut(s)	116, 137, 146, 167
Bsc4I	CCNNNNNNNGG	5 cut(s)	55, 94, 158, 188, 214
Bse118I	RCCGGY	1 cut(s)	55
Bse1I	ACTGG	2 cut(s)	49, 380
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	31, 408
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	5 cut(s)	55, 94, 158, 188, 214
BseMII	CTCAG	1 cut(s)	489
BseNI	ACTGG	2 cut(s)	49, 380
BseRI	GAGGAG	2 cut(s)	17, 341
BseXI	GCAGC	4 cut(s)	408, 437, 483, 487
Bsh1236I	CGCG	3 cut(s)	42, 71, 76
BshFI	GGCC	3 cut(s)	47, 68, 482
BshNI	GGYRCC	1 cut(s)	161
BsiSI	CCGG	2 cut(s)	56, 165
BslI	CCNNNNNNNGG	5 cut(s)	55, 94, 158, 188, 214
BsnI	GGCC	3 cut(s)	47, 68, 482
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	269
BspACI	CCGC	8 cut(s)	40, 59, 69, 74, 121, 183, 189, 273
BspANI	GGCC	3 cut(s)	47, 68, 482
BspCNI	CTCAG	1 cut(s)	488
BspFNI	CGCG	3 cut(s)	42, 71, 76
BspHI	TCATGA	1 cut(s)	198
BspLI	GGNNCC	5 cut(s)	26, 37, 133, 163, 271
BspMAI	CTGCAG	1 cut(s)	398
BspPI	GGATC	2 cut(s)	264, 277
BspT107I	GGYRCC	1 cut(s)	161
BsrFI	RCCGGY	1 cut(s)	55
BsrI	ACTGG	2 cut(s)	49, 380
BssAI	RCCGGY	1 cut(s)	55
BssECI	CCNNGG	2 cut(s)	31, 408
BssMI	GATC	1 cut(s)	269
BssNI	GRCGYC	2 cut(s)	195, 243
BssSI	CACGAG	1 cut(s)	89
Bst2BI	CACGAG	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	32
Bst6I	CTCTTC	2 cut(s)	14, 378
BstACI	GRCGYC	2 cut(s)	195, 243
BstC8I	GCNNGC	5 cut(s)	57, 187, 401, 405, 453
BstDEI	CTNAG	1 cut(s)	475
BstF5I	GGATG	1 cut(s)	418
BstFNI	CGCG	3 cut(s)	42, 71, 76
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	2 cut(s)	73, 179
BstKTI	GATC	1 cut(s)	272
BstMBI	GATC	1 cut(s)	269
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 129, 413, 422, 506
BstNI	CCWGG	1 cut(s)	32
BstNSI	RCATGY	1 cut(s)	403
BstSCI	CCNGG	1 cut(s)	30
BstSFI	CTRYAG	1 cut(s)	394
BstUI	CGCG	3 cut(s)	42, 71, 76
BstV1I	GCAGC	4 cut(s)	408, 437, 483, 487
BstV2I	GAAGAC	1 cut(s)	241
BstX2I	RGATCY	1 cut(s)	269
BstYI	RGATCY	1 cut(s)	269
BsuRI	GGCC	3 cut(s)	47, 68, 482
BtgZI	GCGATG	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	418
BtsI	GCAGTG	1 cut(s)	391
BtsIMutI	CAGTG	1 cut(s)	391
Cac8I	GCNNGC	5 cut(s)	57, 187, 401, 405, 453
CciI	TCATGA	1 cut(s)	198
CfoI	GCGC	2 cut(s)	73, 179
Cfr10I	RCCGGY	1 cut(s)	55
Cfr13I	GGNCC	3 cut(s)	46, 103, 331
CseI	GACGC	2 cut(s)	65, 251
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	2 cut(s)	199, 400
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	1 cut(s)	475
DpnI	GATC	1 cut(s)	271
DpnII	GATC	1 cut(s)	269
EaeI	YGGCCR	1 cut(s)	66
Eam1104I	CTCTTC	2 cut(s)	14, 378
EarI	CTCTTC	2 cut(s)	14, 378
EciI	GGCGGA	1 cut(s)	262
Eco147I	AGGCCT	1 cut(s)	482
Eco24I	GRGCYC	1 cut(s)	38
Eco47I	GGWCC	2 cut(s)	103, 331
Eco57I	CTGAAG	1 cut(s)	273
EcoO109I	RGGNCCY	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	30
EcoT38I	GRGCYC	1 cut(s)	38
FaeI	CATG	2 cut(s)	202, 403
FaiI	YATR	2 cut(s)	200, 401
FatI	CATG	2 cut(s)	198, 399
FauI	CCCGC	3 cut(s)	47, 128, 190
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	6 cut(s)	69, 74, 397, 426, 472, 501
FokI	GGATG	1 cut(s)	425
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	6 cut(s)	69, 74, 397, 426, 472, 501
FspBI	CTAG	1 cut(s)	504
GlaI	GCGC	2 cut(s)	72, 178
GluI	GCNGC	6 cut(s)	69, 74, 397, 426, 472, 501
GsuI	CTGGAG	3 cut(s)	14, 191, 363
HaeII	RGCGCY	1 cut(s)	180
HaeIII	GGCC	3 cut(s)	47, 68, 482
HapII	CCGG	2 cut(s)	56, 165
HgaI	GACGC	2 cut(s)	65, 251
HhaI	GCGC	2 cut(s)	73, 179
Hin1I	GRCGYC	2 cut(s)	195, 243
Hin1II	CATG	2 cut(s)	202, 403
Hin6I	GCGC	2 cut(s)	71, 177
HinP1I	GCGC	2 cut(s)	71, 177
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	1 cut(s)	168
HpaII	CCGG	2 cut(s)	56, 165
HphI	GGTGA	4 cut(s)	73, 203, 319, 477
Hpy166II	GTNNAC	3 cut(s)	103, 220, 493
Hpy188I	TCNGA	1 cut(s)	478
Hpy188III	TCNNGA	4 cut(s)	199, 208, 253, 334
Hpy8I	GTNNAC	3 cut(s)	103, 220, 493
Hpy99I	CGWCG	4 cut(s)	81, 131, 176, 224
HpyAV	CCTTC	2 cut(s)	145, 304
HpyCH4IV	ACGT	2 cut(s)	126, 195
HpyCH4V	TGCA	1 cut(s)	396
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 129, 413, 422, 506
HpyF3I	CTNAG	1 cut(s)	475
HpySE526I	ACGT	2 cut(s)	126, 195
Hsp92I	GRCGYC	2 cut(s)	195, 243
Hsp92II	CATG	2 cut(s)	202, 403
HspAI	GCGC	2 cut(s)	71, 177
KpnI	GGTACC	1 cut(s)	165
KroI	GCCGGC	1 cut(s)	55
KroNI	GCCGGC	1 cut(s)	57
Kzo9I	GATC	1 cut(s)	269
LmnI	GCTCC	5 cut(s)	30, 41, 137, 184, 210
Lsp1109I	GCAGC	4 cut(s)	408, 437, 483, 487
LweI	GCATC	1 cut(s)	403
MaeI	CTAG	1 cut(s)	504
MaeII	ACGT	2 cut(s)	126, 195
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	1 cut(s)	271
MboI	GATC	1 cut(s)	269
MboII	GAAGA	4 cut(s)	31, 241, 279, 365
MflI	RGATCY	1 cut(s)	269
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	1 cut(s)	339
MlyI	GAGTC	1 cut(s)	162
MreI	CGCCGGCG	1 cut(s)	55
MroNI	GCCGGC	1 cut(s)	55
MseI	TTAA	3 cut(s)	213, 342, 432
MspA1I	CMGCKG	1 cut(s)	428
MspI	CCGG	2 cut(s)	56, 165
MspR9I	CCNGG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	32
MvnI	CGCG	3 cut(s)	42, 71, 76
MwoI	GCNNNNNNNGC	5 cut(s)	65, 129, 413, 422, 506
NaeI	GCCGGC	1 cut(s)	57
NdeII	GATC	1 cut(s)	269
NgoMIV	GCCGGC	1 cut(s)	55
NlaIII	CATG	2 cut(s)	202, 403
NlaIV	GGNNCC	5 cut(s)	26, 37, 133, 163, 271
NmeAIII	GCCGAG	1 cut(s)	433
NmuCI	GTSAC	1 cut(s)	191
NspI	RCATGY	1 cut(s)	403
PaeI	GCATGC	1 cut(s)	403
PagI	TCATGA	1 cut(s)	198
PceI	AGGCCT	1 cut(s)	482
PcsI	WCGNNNNNNNCGW	3 cut(s)	135, 144, 153
PdiI	GCCGGC	1 cut(s)	57
PflFI	GACNNNGTC	1 cut(s)	245
PkrI	GCNGC	6 cut(s)	70, 75, 398, 427, 473, 502
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
PpuMI	RGGWCCY	1 cut(s)	331
Psp5II	RGGWCCY	1 cut(s)	331
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	5 cut(s)	26, 37, 133, 163, 271
PspPI	GGNCC	3 cut(s)	46, 103, 331
PspPPI	RGGWCCY	1 cut(s)	331
PstI	CTGCAG	1 cut(s)	398
PsuI	RGATCY	1 cut(s)	269
PsyI	GACNNNGTC	1 cut(s)	245
PvuII	CAGCTG	1 cut(s)	428
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SalI	GTCGAC	1 cut(s)	218
SaqAI	TTAA	3 cut(s)	213, 342, 432
SatI	GCNGC	6 cut(s)	69, 74, 397, 426, 472, 501
Sau3AI	GATC	1 cut(s)	269
Sau96I	GGNCC	3 cut(s)	46, 103, 331
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	1 cut(s)	38
SfaNI	GCATC	1 cut(s)	403
SfcI	CTRYAG	1 cut(s)	394
SgrAI	CRCCGGYG	1 cut(s)	55
SinI	GGWCC	2 cut(s)	103, 331
SphI	GCATGC	1 cut(s)	403
Sse9I	AATT	1 cut(s)	339
SseBI	AGGCCT	1 cut(s)	482
SsiI	CCGC	8 cut(s)	40, 59, 69, 74, 121, 183, 189, 273
SspMI	CTAG	1 cut(s)	504
StuI	AGGCCT	1 cut(s)	482
StyD4I	CCNGG	1 cut(s)	30
TaiI	ACGT	2 cut(s)	129, 198
TaqI	TCGA	3 cut(s)	17, 138, 219
TasI	AATT	1 cut(s)	339
TauI	GCSGC	2 cut(s)	71, 76
Tru1I	TTAA	3 cut(s)	213, 342, 432
Tru9I	TTAA	3 cut(s)	213, 342, 432
TscAI	CASTG	1 cut(s)	398
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	4 cut(s)	396, 425, 471, 500
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	1 cut(s)	215
TspGWI	ACGGA	3 cut(s)	145, 314, 365
TspRI	CASTG	1 cut(s)	398
Tth111I	GACNNNGTC	1 cut(s)	245
VpaK11BI	GGWCC	2 cut(s)	103, 331
XceI	RCATGY	1 cut(s)	403
XmiI	GTMKAC	1 cut(s)	219
XspI	CTAG	1 cut(s)	504
ZraI	GACGTC	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.